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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300085 (36 seq.)
>W1710791190
LJNL01000002
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_15 [LJNL]
13394
13470
+
Arg
ACG
[ENA]
¡û
>W1710872113
LMLT01000001
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
436198
436122
-
Arg
ACG
[ENA]
¡û
>W1710872114
LMLT01000001
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
436069
435993
-
Arg
ACG
[ENA]
¡û
>W1711386567
MEFO01000014
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
204840
204916
+
Arg
ACG
[ENA]
¡û
>W1711386568
MEFO01000014
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
204969
205045
+
Arg
ACG
[ENA]
¡û
>W1711503373
MKTN01000055
Gammaproteobacteria
Gammaproteobacteria bacterium 39-13 [MKTN]
72149
72073
-
Arg
ACG
[ENA]
¡û
>W1711506472
MKWK01000022
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
17569
17645
+
Arg
ACG
[ENA]
¡û
>W1711506473
MKWK01000022
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
17698
17774
+
Arg
ACG
[ENA]
¡û
>WENV180343108
OBLK01000002
[OBLK] soil metagenome; Clay
100180
100256
+
Arg
ACG
[ENA]
¢þ
>WENV180351572
OBLQ010073090
[OBLQ] soil metagenome; soil
142
66
-
Arg
ACG
[ENA]
¢þ
>WENV180363616
OBNY01145038
[OBNY] marine metagenome; ENVO:00002010
249
173
-
Arg
ACG
[ENA]
¢þ
>WENV181295122
OFHI01000613
[OFHI] soil metagenome; Clay
1674
1598
-
Arg
ACG
[ENA]
¢þ
>WENV181297997
OFHL01011871
[OFHL] soil metagenome; Clay
1137
1061
-
Arg
ACG
[ENA]
¢þ
>WENV170706614
LNAP01004674
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4040
3964
-
Arg
ACG
[ENA]
¢þ
>WENV170708795
LNAQ01001348
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3547
3623
+
Arg
ACG
[ENA]
¢þ
>WENV170770867
LXNI01000135
[LXNI] sponge metagenome; marine sponge reef
73305
73229
-
Arg
ACG
[ENA]
¢þ
>WENV170834793
MDSZ01102926
[MDSZ] marine metagenome; seawater
4878
4954
+
Arg
ACG
[ENA]
¢þ
>WENV170905112
MDTE01021372
[MDTE] marine metagenome; seawater
123445
123521
+
Arg
ACG
[ENA]
¢þ
>WENV170960345
MKWU01024954
[MKWU] sponge metagenome;
3083
3159
+
Arg
ACG
[ENA]
¢þ
>C181039128
CP019797
Gammaproteobacteria
Stenotrophomonas acidaminiphila SUNEO [CP019797]
2139782
2139858
+
Arg
ACG
-
¡û
>C181039129
CP019797
Gammaproteobacteria
Stenotrophomonas acidaminiphila SUNEO [CP019797]
2139911
2139987
+
Arg
ACG
-
¡û
>C161047148
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
2483351
2483427
+
Arg
ACG
[Ensembl]
¡û
>C161047149
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
2483480
2483556
+
Arg
ACG
[Ensembl]
¡û
>C161075977
CP014671
Gammaproteobacteria
Immundisolibacter cernigliae TR3.2 [CP014671]
2105049
2105125
+
Arg
ACG
[Ensembl]
¡û
>W1610586749
LDJG01000011
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
138931
138855
-
Arg
ACG
[ENA]
¡û
>W1610586750
LDJG01000011
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
138802
138726
-
Arg
ACG
[ENA]
¡û
>W1610587231
LDJO01000024
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
125522
125598
+
Arg
ACG
[ENA]
¡û
>W1610587232
LDJO01000024
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
125651
125727
+
Arg
ACG
[ENA]
¡û
>W1610655115
LJNL01000002
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_15 [LJNL]
13394
13470
+
Arg
ACG
[ENA]
¡û
>W1610734459
LMLT01000001
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
436198
436122
-
Arg
ACG
[ENA]
¡û
>W1610734460
LMLT01000001
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
436069
435993
-
Arg
ACG
[ENA]
¡û
>W1710604257
FUZV01000001
Gammaproteobacteria
Pseudoxanthomonas indica [FUZV]
538016
538092
+
Arg
ACG
[ENA]
¡û
>W1710705879
LDJG01000011
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
138931
138855
-
Arg
ACG
[ENA]
¡û
>W1710705880
LDJG01000011
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
138802
138726
-
Arg
ACG
[ENA]
¡û
>W1710706361
LDJO01000024
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
125522
125598
+
Arg
ACG
[ENA]
¡û
>W1710706362
LDJO01000024
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
125651
125727
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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