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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300148 (88 seq.)
>C171064240
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2452580
2452655
+
Val
TAC
-
¡û
>C171064250
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590402
2590477
+
Val
TAC
-
¡û
>C171064277
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2618481
2618556
+
Val
TAC
-
¡û
>C171064313
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
715977
715902
-
Val
TAC
-
¡û
>C171064320
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
709678
709603
-
Val
TAC
-
¡û
>C171064347
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695736
695661
-
Val
TAC
-
¡û
>C171064359
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
689012
688937
-
Val
TAC
-
¡û
>C000800
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1842819
1842894
+
Val
TAC
[Ensembl]
¡û
>C000814
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4453316
4453241
-
Val
TAC
[Ensembl]
¡û
>C000827
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4446723
4446648
-
Val
TAC
[Ensembl]
¡û
>C000847
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4438012
4437937
-
Val
TAC
[Ensembl]
¡û
>C000871
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4430271
4430196
-
Val
TAC
[Ensembl]
¡û
>W131227352
AUFC01000001
Bacillota
Anaerovorax odorimutans DSM 5092 [AUFC]
174949
175024
+
Val
TAC
[ENA]
¡û
>W131227374
AUFC01000005
Bacillota
Anaerovorax odorimutans DSM 5092 [AUFC]
73964
73889
-
Val
TAC
[ENA]
¡û
>WENV180198375
OBAC01053107
[OBAC] human gut metagenome; ENVO:feces
83
158
+
Val
TAC
[ENA]
¢þ
>WENV180206721
OBAI01000844
[OBAI] human gut metagenome; human gut
9492
9417
-
Val
TAC
[ENA]
¢þ
>WENV180223861
OBBH01070962
[OBBH] human gut metagenome; human gut
175
100
-
Val
TAC
[ENA]
¢þ
>WENV180274648
OBHE01004102
[OBHE] human gut metagenome; human gut
328
253
-
Val
TAC
[ENA]
¢þ
>WENV180328790
OBKV01000008
[OBKV] human gut metagenome; human gut
73947
74022
+
Val
TAC
[ENA]
¢þ
>WENV180405664
OBTM01063398
[OBTM] human gut metagenome; ENVO:feces
187
112
-
Val
TAC
[ENA]
¢þ
>WENV180541398
OCHR01124091
[OCHR] human gut metagenome; human gut
129
204
+
Val
TAC
[ENA]
¢þ
>WENV180544427
OCIQ01004507
[OCIQ] human gut metagenome; human gut
1432
1507
+
Val
TAC
[ENA]
¢þ
>WENV180596387
OCPH01028778
[OCPH] human gut metagenome; ENVO:feces
186
261
+
Val
TAC
[ENA]
¢þ
>WENV180649470
OCSK01057315
[OCSK] human gut metagenome; human gut
12
87
+
Val
TAC
[ENA]
¢þ
>WENV180811947
ODJN01001562
[ODJN] human metagenome; G_DNA_Stool
339
264
-
Val
TAC
[ENA]
¢þ
>WENV181647885
OGNQ01001357
[OGNQ] metagenome; Human gut stool
444
519
+
Val
TAC
[ENA]
¢þ
>WENV181691993
OGOZ01047575
[OGOZ] human gut metagenome; faeces
566
491
-
Val
TAC
[ENA]
¢þ
>WENV181704386
OGPK01000116
[OGPK] human gut metagenome; faeces
45812
45887
+
Val
TAC
[ENA]
¢þ
>WENV182142743
OHKU01011527
[OHKU] human gut metagenome; feces
100
25
-
Val
TAC
[ENA]
¢þ
>WENV183158240
OLOT01026357
[OLOT] human gut metagenome; faeces
160
85
-
Val
TAC
[ENA]
¢þ
>WENV183641953
OQVL01111820
[OQVL] human gut metagenome; human gut
115
40
-
Val
TAC
[ENA]
¢þ
>WENV183654136
OQWA01011744
[OQWA] human gut metagenome; human gut
803
728
-
Val
TAC
[ENA]
¢þ
>WENV183721717
PDWJ01082070
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
306
381
+
Val
TAC
[ENA]
¢þ
>WENV170022038
BBPG01010659
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3239
3314
+
Val
TAC
[ENA]
¢þ
>WENV170643966
JMBV01014830
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
450
525
+
Val
TAC
[ENA]
¢þ
>WENV170643982
JMBV01016610
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
229
154
-
Val
TAC
[ENA]
¢þ
>WENV170644031
JMBV01023533
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
92
167
+
Val
TAC
[ENA]
¢þ
>WENV170644110
JMBV01039715
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
209
134
-
Val
TAC
[ENA]
¢þ
>WENV170644303
JMBW01005171
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
993
1068
+
Val
TAC
[ENA]
¢þ
>WENV170644335
JMBW01006875
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
466
391
-
Val
TAC
[ENA]
¢þ
>WENV170644342
JMBW01007032
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
228
303
+
Val
TAC
[ENA]
¢þ
>WENV170644431
JMBW01015014
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
360
435
+
Val
TAC
[ENA]
¢þ
>WENV170644550
JMBW01029561
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
160
235
+
Val
TAC
[ENA]
¢þ
>WENV170658810
JUEG02000672
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
24752
24827
+
Val
TAC
[ENA]
¢þ
>WENV170660277
JXWT01052136
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
180
105
-
Val
TAC
[ENA]
¢þ
>WENV170695493
LGVE01106481
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1126
1201
+
Val
TAC
[ENA]
¢þ
>WENV170696400
LGVF01016046
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
5609
5684
+
Val
TAC
[ENA]
¢þ
>WENV170717022
LSQX01020667
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2155
2080
-
Val
TAC
[ENA]
¢þ
>WENV170720571
LSQX01157830
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
61177
61252
+
Val
TAC
[ENA]
¢þ
>W1910341074
FTPC01000005
Bacillota
Peptoniphilus urinae Marseille-P3195 [FTPC]
94
169
+
Val
TAC
[ENA]
¡û
>W1910373590
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
394
469
+
Val
TAC
[ENA]
¡û
>W1910373601
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
1564
1639
+
Val
TAC
[ENA]
¡û
>W1910373616
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
614
689
+
Val
TAC
[ENA]
¡û
>W1910496855
FXVB02000089
Bacillota
Bacillota bacterium HV4-6-A5C [FXVB]
517
592
+
Val
TAC
[ENA]
¡û
>W1911498542
OCTU01000004
Bacillota
Urinicoccus timonensis Marseille-P3926 [OCTU]
92233
92158
-
Val
TAC
[ENA]
¡û
>C151057219
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1053907
1053982
+
Val
TAC
[Ensembl]
¡û
>C151057229
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1166986
1167061
+
Val
TAC
[Ensembl]
¡û
>C151057245
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1178443
1178518
+
Val
TAC
[Ensembl]
¡û
>C151057273
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
3724444
3724369
-
Val
TAC
[Ensembl]
¡û
>SRA1040556
SRR035091.114552
454 Sequencing (SRP001812)
44
119
+
Val
TAC
[SRA]
>C161076039
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
2939968
2939893
-
Val
TAC
[Ensembl]
¡û
>C161076087
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
3032216
3032141
-
Val
TAC
[Ensembl]
¡û
>W1610043695
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
79406
79481
+
Val
TAC
[ENA]
¡û
>C131011921
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
2878658
2878583
-
Val
TAC
-
¡û
>C131011922
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
2753614
2753539
-
Val
TAC
-
¡û
>W1610506370
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
1845516
1845441
-
Val
TAC
[ENA]
¡û
>W1610606669
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105910
105835
-
Val
TAC
[ENA]
¡û
>W1610606677
LFTC01000083
Bacillota
Clostridiales bacterium DTU083 [LFTC]
22582
22657
+
Val
TAC
[ENA]
¡û
>W1710040855
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
79406
79481
+
Val
TAC
[ENA]
¡û
>W1710498873
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
1845516
1845441
-
Val
TAC
[ENA]
¡û
>W1710520421
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
549970
549895
-
Val
TAC
[ENA]
¡û
>W1710520443
FNFP01000003
Bacillota
Natronincola ferrireducens [FNFP]
234693
234768
+
Val
TAC
[ENA]
¡û
>W1710520452
FNFP01000015
Bacillota
Natronincola ferrireducens [FNFP]
15828
15753
-
Val
TAC
[ENA]
¡û
>W1710532282
FNQE01000027
Bacillota
Proteiniborus ethanoligenes [FNQE]
45592
45517
-
Val
TAC
[ENA]
¡û
>W1710553658
FOHU01000012
Bacillota
Natronincola peptidivorans [FOHU]
6694
6769
+
Val
TAC
[ENA]
¡û
>W1710560465
FONK01000008
Bacillota
Peptostreptococcaceae bacterium pGA-8 [FONK]
18149
18224
+
Val
TAC
[ENA]
¡û
>W1710560481
FONK01000008
Bacillota
Peptostreptococcaceae bacterium pGA-8 [FONK]
826
751
-
Val
TAC
[ENA]
¡û
>W1710589526
FRAG01000014
Bacillota
Paramaledivibacter caminithermalis DSM 15212 [FRAG]
516
591
+
Val
TAC
[ENA]
¡û
>W1710589539
FRAG01000028
Bacillota
Paramaledivibacter caminithermalis DSM 15212 [FRAG]
31066
30991
-
Val
TAC
[ENA]
¡û
>W1710589690
FRAJ01000008
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
135759
135684
-
Val
TAC
[ENA]
¡û
>W1710589694
FRAJ01000013
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
42854
42779
-
Val
TAC
[ENA]
¡û
>W1710589711
FRAJ01000025
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
24656
24731
+
Val
TAC
[ENA]
¡û
>W1710589715
FRAJ01000026
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
17463
17538
+
Val
TAC
[ENA]
¡û
>W1710589721
FRAJ01000034
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
4100
4175
+
Val
TAC
[ENA]
¡û
>W1710589723
FRAJ01000043
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
12
87
+
Val
TAC
[ENA]
¡û
>W1710604177
FUZT01000001
Bacillota
Maledivibacter halophilus [FUZT]
869689
869764
+
Val
TAC
[ENA]
¡û
>W1710727956
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105910
105835
-
Val
TAC
[ENA]
¡û
>W1710727964
LFTC01000083
Bacillota
Clostridiales bacterium DTU083 [LFTC]
22582
22657
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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