This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300376 (117 seq.)
>W141042710
AMES01000137
Bacteroidota
Capnocytophaga sp. oral taxon 380 oral taxon 380 str. F0488 [AMES]
5239
5164
-
Lys
TTT
[ENA]
¡û
>W141042769
AMEU01000070
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
17864
17789
-
Lys
TTT
[ENA]
¡û
>W141042770
AMEU01000070
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
17754
17679
-
Lys
TTT
[ENA]
¡û
>W141042828
AMEV01000150
Bacteroidota
Capnocytophaga sp. oral taxon 324 oral taxon 324 str. F0483 [AMEV]
5608
5683
+
Lys
TTT
[ENA]
¡û
>W141042829
AMEV01000150
Bacteroidota
Capnocytophaga sp. oral taxon 324 oral taxon 324 str. F0483 [AMEV]
5716
5791
+
Lys
TTT
[ENA]
¡û
>WENV180698667
ODDH01066511
[ODDH] human metagenome; G_DNA_Buccal mucosa
217
144
-
Lys
TTT
[ENA]
¢þ
>WENV180718412
ODGG01001092
[ODGG] human metagenome; G_DNA_Buccal mucosa
2782
2855
+
Lys
TTT
[ENA]
¢þ
>WENV180720900
ODGJ01246460
[ODGJ] human metagenome; G_DNA_Tongue dorsum
159
86
-
Lys
TTT
[ENA]
¢þ
>WENV180732275
ODGY01000063
[ODGY] human metagenome; G_DNA_Supragingival plaque
43495
43422
-
Lys
TTT
[ENA]
¢þ
>WENV180732276
ODGY01000063
[ODGY] human metagenome; G_DNA_Supragingival plaque
43387
43314
-
Lys
TTT
[ENA]
¢þ
>WENV180732372
ODGY01000300
[ODGY] human metagenome; G_DNA_Supragingival plaque
76
3
-
Lys
TTT
[ENA]
¢þ
>WENV180751974
ODHS01283254
[ODHS] human metagenome; G_DNA_Supragingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV180765220
ODIB01045616
[ODIB] human metagenome; G_DNA_Supragingival plaque
156
83
-
Lys
TTT
[ENA]
¢þ
>WENV180776499
ODIK01047838
[ODIK] human metagenome; G_DNA_Tongue dorsum
352
279
-
Lys
TTT
[ENA]
¢þ
>WENV180808912
ODJK01001812
[ODJK] human metagenome; G_DNA_Subgingival plaque
9206
9279
+
Lys
TTT
[ENA]
¢þ
>WENV180810502
ODJK01352201
[ODJK] human metagenome; G_DNA_Subgingival plaque
6
79
+
Lys
TTT
[ENA]
¢þ
>WENV180810516
ODJK01353088
[ODJK] human metagenome; G_DNA_Subgingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV180846517
ODKT01013216
[ODKT] human metagenome; G_DNA_Supragingival plaque
162
89
-
Lys
TTT
[ENA]
¢þ
>WENV180848119
ODKT01384160
[ODKT] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV180859832
ODLD01005318
[ODLD] human metagenome; G_DNA_Supragingival plaque
4374
4447
+
Lys
TTT
[ENA]
¢þ
>WENV180859877
ODLD01006848
[ODLD] human metagenome; G_DNA_Supragingival plaque
1755
1828
+
Lys
TTT
[ENA]
¢þ
>WENV180860564
ODLD01169117
[ODLD] human metagenome; G_DNA_Supragingival plaque
89
162
+
Lys
TTT
[ENA]
¢þ
>WENV180860602
ODLD01181123
[ODLD] human metagenome; G_DNA_Supragingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV180873983
ODLP01071203
[ODLP] human metagenome; G_DNA_Tongue dorsum
187
114
-
Lys
TTT
[ENA]
¢þ
>WENV180891443
ODMQ01000133
[ODMQ] human metagenome; G_DNA_Supragingival plaque
14278
14351
+
Lys
TTT
[ENA]
¢þ
>WENV180891444
ODMQ01000133
[ODMQ] human metagenome; G_DNA_Supragingival plaque
14388
14461
+
Lys
TTT
[ENA]
¢þ
>WENV180901216
ODOJ01068150
[ODOJ] human metagenome; G_DNA_Tongue dorsum
257
184
-
Lys
TTT
[ENA]
¢þ
>WENV180934783
ODTS01002918
[ODTS] human metagenome; G_DNA_Subgingival plaque
1963
1890
-
Lys
TTT
[ENA]
¢þ
>WENV180934784
ODTS01002918
[ODTS] human metagenome; G_DNA_Subgingival plaque
1853
1780
-
Lys
TTT
[ENA]
¢þ
>WENV180943756
ODUC01002298
[ODUC] human metagenome; G_DNA_Supragingival plaque
9783
9856
+
Lys
TTT
[ENA]
¢þ
>WENV180944002
ODUC01005925
[ODUC] human metagenome; G_DNA_Supragingival plaque
41
114
+
Lys
TTT
[ENA]
¢þ
>WENV180944103
ODUC01007665
[ODUC] human metagenome; G_DNA_Supragingival plaque
154
81
-
Lys
TTT
[ENA]
¢þ
>WENV180945671
ODUC01302023
[ODUC] human metagenome; G_DNA_Supragingival plaque
41
114
+
Lys
TTT
[ENA]
¢þ
>WENV180945698
ODUC01311682
[ODUC] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV180958364
ODUL01003453
[ODUL] human metagenome; G_DNA_Supragingival plaque
4379
4306
-
Lys
TTT
[ENA]
¢þ
>WENV180958365
ODUL01003453
[ODUL] human metagenome; G_DNA_Supragingival plaque
4269
4196
-
Lys
TTT
[ENA]
¢þ
>WENV180958366
ODUL01003453
[ODUL] human metagenome; G_DNA_Supragingival plaque
4159
4086
-
Lys
TTT
[ENA]
¢þ
>WENV180983160
ODVF01004560
[ODVF] human metagenome; G_DNA_Supragingival plaque
154
81
-
Lys
TTT
[ENA]
¢þ
>WENV180983340
ODVF01008326
[ODVF] human metagenome; G_DNA_Supragingival plaque
3583
3656
+
Lys
TTT
[ENA]
¢þ
>WENV180984309
ODVF01251424
[ODVF] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV180990284
ODVN01000783
[ODVN] human metagenome; G_DNA_Tongue dorsum
166
93
-
Lys
TTT
[ENA]
¢þ
>WENV180990296
ODVN01000804
[ODVN] human metagenome; G_DNA_Tongue dorsum
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV180990339
ODVN01000968
[ODVN] human metagenome; G_DNA_Tongue dorsum
154
81
-
Lys
TTT
[ENA]
¢þ
>WENV180990703
ODVN01003651
[ODVN] human metagenome; G_DNA_Tongue dorsum
164
91
-
Lys
TTT
[ENA]
¢þ
>WENV181012227
ODWJ01075692
[ODWJ] human metagenome; G_DNA_Buccal mucosa
124
51
-
Lys
TTT
[ENA]
¢þ
>WENV181018912
ODWU01000186
[ODWU] human metagenome; G_DNA_Supragingival plaque
52713
52640
-
Lys
TTT
[ENA]
¢þ
>WENV181018913
ODWU01000186
[ODWU] human metagenome; G_DNA_Supragingival plaque
52609
52536
-
Lys
TTT
[ENA]
¢þ
>WENV181019202
ODWU01001093
[ODWU] human metagenome; G_DNA_Supragingival plaque
76
3
-
Lys
TTT
[ENA]
¢þ
>WENV181019613
ODWU01007434
[ODWU] human metagenome; G_DNA_Supragingival plaque
91
164
+
Lys
TTT
[ENA]
¢þ
>WENV181019614
ODWU01007434
[ODWU] human metagenome; G_DNA_Supragingival plaque
195
268
+
Lys
TTT
[ENA]
¢þ
>WENV181019729
ODWU01011755
[ODWU] human metagenome; G_DNA_Supragingival plaque
76
3
-
Lys
TTT
[ENA]
¢þ
>WENV181019849
ODWU01019239
[ODWU] human metagenome; G_DNA_Supragingival plaque
1618
1545
-
Lys
TTT
[ENA]
¢þ
>WENV181019850
ODWU01019239
[ODWU] human metagenome; G_DNA_Supragingival plaque
1514
1441
-
Lys
TTT
[ENA]
¢þ
>WENV181020475
ODWU01232719
[ODWU] human metagenome; G_DNA_Supragingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV181020488
ODWU01234124
[ODWU] human metagenome; G_DNA_Supragingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV181020536
ODWU01242065
[ODWU] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV181069992
OEAE01000097
[OEAE] human metagenome; G_DNA_Supragingival plaque
91
164
+
Lys
TTT
[ENA]
¢þ
>WENV181071039
OEAE01087350
[OEAE] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV181071040
OEAE01087352
[OEAE] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV181079246
OEAS01003530
[OEAS] human metagenome; G_DNA_Supragingival plaque
8130
8203
+
Lys
TTT
[ENA]
¢þ
>WENV181079454
OEAS01006888
[OEAS] human metagenome; G_DNA_Supragingival plaque
154
81
-
Lys
TTT
[ENA]
¢þ
>WENV181082065
OEAS01560501
[OEAS] human metagenome; G_DNA_Supragingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV181095285
OEBY01005418
[OEBY] human metagenome; G_DNA_Tongue dorsum
5017
4944
-
Lys
TTT
[ENA]
¢þ
>WENV181095286
OEBY01005418
[OEBY] human metagenome; G_DNA_Tongue dorsum
4906
4833
-
Lys
TTT
[ENA]
¢þ
>WENV181121239
OEFL01001651
[OEFL] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV181121398
OEFL01003347
[OEFL] human metagenome; G_DNA_Supragingival plaque
154
81
-
Lys
TTT
[ENA]
¢þ
>WENV181121621
OEFL01010893
[OEFL] human metagenome; G_DNA_Supragingival plaque
81
8
-
Lys
TTT
[ENA]
¢þ
>WENV181122245
OEFL01167963
[OEFL] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV181123855
OEFQ01001607
[OEFQ] human metagenome; G_DNA_Supragingival plaque
76
3
-
Lys
TTT
[ENA]
¢þ
>WENV181124326
OEFQ01072290
[OEFQ] human metagenome; G_DNA_Supragingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV181137366
OEGJ01002247
[OEGJ] human metagenome; G_DNA_Supragingival plaque
4551
4478
-
Lys
TTT
[ENA]
¢þ
>WENV181137416
OEGJ01003361
[OEGJ] human metagenome; G_DNA_Supragingival plaque
159
86
-
Lys
TTT
[ENA]
¢þ
>WENV181137751
OEGJ01020506
[OEGJ] human metagenome; G_DNA_Supragingival plaque
159
86
-
Lys
TTT
[ENA]
¢þ
>WENV181138246
OEGJ01186228
[OEGJ] human metagenome; G_DNA_Supragingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV181152346
OEIA01000974
[OEIA] human metagenome; G_DNA_Supragingival plaque
14066
14139
+
Lys
TTT
[ENA]
¢þ
>WENV181152426
OEIA01001406
[OEIA] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV181152465
OEIA01001645
[OEIA] human metagenome; G_DNA_Supragingival plaque
10160
10233
+
Lys
TTT
[ENA]
¢þ
>WENV181152466
OEIA01001645
[OEIA] human metagenome; G_DNA_Supragingival plaque
10264
10337
+
Lys
TTT
[ENA]
¢þ
>WENV181152467
OEIA01001645
[OEIA] human metagenome; G_DNA_Supragingival plaque
10368
10441
+
Lys
TTT
[ENA]
¢þ
>WENV181152741
OEIA01005204
[OEIA] human metagenome; G_DNA_Supragingival plaque
154
81
-
Lys
TTT
[ENA]
¢þ
>WENV181152885
OEIA01008888
[OEIA] human metagenome; G_DNA_Supragingival plaque
3177
3104
-
Lys
TTT
[ENA]
¢þ
>WENV181153725
OEIA01235928
[OEIA] human metagenome; G_DNA_Supragingival plaque
76
3
-
Lys
TTT
[ENA]
¢þ
>WENV181177120
OEJS01000013
[OEJS] human metagenome; G_DNA_Supragingival plaque
27981
28054
+
Lys
TTT
[ENA]
¢þ
>WENV181177121
OEJS01000013
[OEJS] human metagenome; G_DNA_Supragingival plaque
28089
28162
+
Lys
TTT
[ENA]
¢þ
>WENV181177609
OEJS01006998
[OEJS] human metagenome; G_DNA_Supragingival plaque
2361
2434
+
Lys
TTT
[ENA]
¢þ
>WENV181178230
OEJS01110895
[OEJS] human metagenome; G_DNA_Supragingival plaque
293
220
-
Lys
TTT
[ENA]
¢þ
>WENV181181946
OEJV01000836
[OEJV] human metagenome; G_DNA_Supragingival plaque
166
93
-
Lys
TTT
[ENA]
¢þ
>WENV181182038
OEJV01001768
[OEJV] human metagenome; G_DNA_Supragingival plaque
8682
8609
-
Lys
TTT
[ENA]
¢þ
>WENV181183187
OEJV01238065
[OEJV] human metagenome; G_DNA_Supragingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV183508496
OMHD01007128
[OMHD] human oral metagenome; human oral
142
215
+
Lys
TTT
[ENA]
¢þ
>C181063618
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
2512155
2512228
+
Lys
TTT
-
¡û
>C181063619
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
2512263
2512336
+
Lys
TTT
-
¡û
>C181063664
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
2261666
2261739
+
Lys
TTT
-
¡û
>C181063665
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
2261764
2261837
+
Lys
TTT
-
¡û
>C181063692
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
732971
733044
+
Lys
TTT
-
¡û
>C181063693
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
733081
733154
+
Lys
TTT
-
¡û
>C181063802
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
2986248
2986175
-
Lys
TTT
-
¡û
>C181063803
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
2986138
2986065
-
Lys
TTT
-
¡û
>C181063915
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
549632
549559
-
Lys
TTT
-
¡û
>C181063916
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
549525
549452
-
Lys
TTT
-
¡û
>C181063981
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
2273705
2273778
+
Lys
TTT
-
¡û
>W1911239248
NSDI01000005
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
153160
153087
-
Lys
TTT
[ENA]
¡û
>W1911239249
NSDI01000005
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
153052
152979
-
Lys
TTT
[ENA]
¡û
>C151095859
CP012589
Bacteroidota
Capnocytophaga sp. oral taxon 323 F0383 [CP012589]
9037
9112
+
Lys
TTT
-
¡û
>C151095860
CP012589
Bacteroidota
Capnocytophaga sp. oral taxon 323 F0383 [CP012589]
9145
9220
+
Lys
TTT
-
¡û
>W1510076187
CDOE01000057
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
153
228
+
Lys
TTT
[ENA]
¡û
>W1510076291
CDOH01000002
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
872
947
+
Lys
TTT
[ENA]
¡û
>W1510076292
CDOH01000002
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
980
1053
+
Lys
TTT
[ENA]
¡û
>W1510076352
CDOI01000148
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
49579
49504
-
Lys
TTT
[ENA]
¡û
>W1510076353
CDOI01000148
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
49471
49398
-
Lys
TTT
[ENA]
¡û
>W1510076452
CDOL01000024
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
20019
19944
-
Lys
TTT
[ENA]
¡û
>W1510076453
CDOL01000024
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
19911
19838
-
Lys
TTT
[ENA]
¡û
>W11152342
AEXX01000020
Bacteroidota
Capnocytophaga sp. oral taxon 338 oral taxon 338 str. F0234 [AEXX]
18105
18032
-
Lys
TTT
[ENA]
¡û
>C161068905
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
1412886
1412811
-
Lys
TTT
[Ensembl]
¡û
>W121081543
AKFV01000036
Bacteroidota
Capnocytophaga ochracea str. Holt 25 [AKFV]
27764
27689
-
Lys
TTT
[ENA]
¡û
>W121112688
ALNN01000023
Bacteroidota
Capnocytophaga sp. CM59 [ALNN]
58866
58939
+
Lys
TTT
[ENA]
¡û
>W1710528369
FNND01000008
Bacteroidota
Capnocytophaga granulosa [FNND]
80174
80247
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK