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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300377 (51 seq.)
>W1710821329
LKST01000001
Actinomycetota
Corynebacterium oculi [LKST]
73198
73123
-
Lys
CTT
[ENA]
¡û
>W131053520
ANAD01000022
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
1006
933
-
Lys
CTT
[ENA]
¡û
>W131054283
ANAS01000011
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
85230
85303
+
Lys
CTT
[ENA]
¡û
>W131055161
ANBG01000312
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
40163
40236
+
Lys
CTT
[ENA]
¡û
>W131055162
ANBG01000312
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
45994
46069
+
Lys
CTT
[ENA]
¡û
>W131055199
ANBH01000141
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
2140
2213
+
Lys
CTT
[ENA]
¡û
>WENV180788603
ODIS01082422
[ODIS] human metagenome; G_DNA_Supragingival plaque
467
540
+
Lys
CTT
[ENA]
¢þ
>WENV180832517
ODKC01002033
[ODKC] human metagenome; G_DNA_Supragingival plaque
3637
3564
-
Lys
CTT
[ENA]
¢þ
>WENV180832749
ODKC01003816
[ODKC] human metagenome; G_DNA_Supragingival plaque
1314
1241
-
Lys
CTT
[ENA]
¢þ
>WENV180834385
ODKD01018047
[ODKD] human metagenome; G_DNA_Supragingival plaque
467
540
+
Lys
CTT
[ENA]
¢þ
>WENV180857661
ODLB01047591
[ODLB] human metagenome; G_DNA_L_Retroauricular crease
154
227
+
Lys
CTT
[ENA]
¢þ
>WENV180891885
ODMQ01031205
[ODMQ] human metagenome; G_DNA_Supragingival plaque
180
253
+
Lys
CTT
[ENA]
¢þ
>WENV180943594
ODUC01001102
[ODUC] human metagenome; G_DNA_Supragingival plaque
12282
12355
+
Lys
CTT
[ENA]
¢þ
>WENV180958672
ODUL01019965
[ODUL] human metagenome; G_DNA_Supragingival plaque
289
362
+
Lys
CTT
[ENA]
¢þ
>WENV181007357
ODWE01000034
[ODWE] human metagenome; G_DNA_Supragingival plaque
33115
33042
-
Lys
CTT
[ENA]
¢þ
>WENV181083721
OEAV01019578
[OEAV] human metagenome; G_DNA_Supragingival plaque
1314
1241
-
Lys
CTT
[ENA]
¢þ
>WENV181098130
OECA01092602
[OECA] human metagenome; G_DNA_Tongue dorsum
104
31
-
Lys
CTT
[ENA]
¢þ
>WENV181121384
OEFL01003144
[OEFL] human metagenome; G_DNA_Supragingival plaque
2958
2885
-
Lys
CTT
[ENA]
¢þ
>WENV182644335
OJLW01024453
[OJLW] metagenome; surface
743
816
+
Lys
CTT
[ENA]
¢þ
>C181055927
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
131870
131795
-
Lys
CTT
-
¡û
>C181055928
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
131655
131580
-
Lys
CTT
-
¡û
>C181072225
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
4990402
4990329
-
Lys
CTT
-
¡û
>C181072226
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
4984571
4984497
-
Lys
CTT
-
¡û
>C191114611
CP033897
Actinomycetota
Corynebacterium gerontici W8 [CP033897]
1787629
1787702
+
Lys
CTT
-
¡û
>C191114684
CP033898
Actinomycetota
Corynebacterium pseudopelargi 812CH [CP033898]
523595
523522
-
Lys
CTT
-
¡û
>C191138589
CP035299
Actinomycetota
Corynebacterium pelargi 136/3 [CP035299]
548473
548400
-
Lys
CTT
-
¡û
>C191144049
CP035495
Actinomycetota
Xylanimonas allomyrinae 2JSPR-7 [CP035495]
292236
292311
+
Lys
CTT
-
¡û
>C191210899
LR134407
Actinomycetota
Corynebacterium kutscheri NCTC3655 [LR134407]
2347967
2347894
-
Lys
CTT
-
¡û
>W09109158
ABUA01000005
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
43092
43017
-
Lys
CTT
[ENA]
¡û
>W09109159
ABUA01000005
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
42877
42802
-
Lys
CTT
[ENA]
¡û
>W09110397
ABVC01000023
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [ABVC]
9670
9745
+
Lys
CTT
[ENA]
¡û
>W09110398
ABVC01000023
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [ABVC]
14017
14092
+
Lys
CTT
[ENA]
¡û
>W09113408
ABYP01000064
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
63315
63240
-
Lys
CTT
[ENA]
¡û
>W09113409
ABYP01000064
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
63208
63135
-
Lys
CTT
[ENA]
¡û
>W09123848
ACHF01000110
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
4355
4280
-
Lys
CTT
[ENA]
¡û
>W09123849
ACHF01000110
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
4248
4175
-
Lys
CTT
[ENA]
¡û
>W1810089861
PGEZ01000002
Actinomycetota
Mumia flava DSM 27763 [PGEZ]
945813
945886
+
Lys
CTT
[ENA]
¡û
>W1810155051
PJAF01000015
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
48521
48447
-
Lys
CTT
[ENA]
¡û
>C151084395
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
2721001
2721076
+
Lys
CTT
[Ensembl]
¡û
>W1510015685
BBRF01000001
Actinomycetota
Demequina aurantiaca NBRC 106265 [BBRF]
1472498
1472573
+
Lys
CTT
[ENA]
¡û
>W1511351464
JRNG01000049
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
3673
3600
-
Lys
CTT
[ENA]
¡û
>W1511398052
JTDJ01000016
Actinomycetota
Mumia flava MUSC 201 [JTDJ]
9516
9441
-
Lys
CTT
[ENA]
¡û
>W1511568496
LAJC01000004
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
124635
124562
-
Lys
CTT
[ENA]
¡û
>W1610051449
BBGW01000163
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
240
315
+
Lys
CTT
[ENA]
¡û
>W1610051454
BBGW01000249
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
151
76
-
Lys
CTT
[ENA]
¡û
>W1610685291
LKST01000001
Actinomycetota
Corynebacterium oculi [LKST]
73198
73123
-
Lys
CTT
[ENA]
¡û
>W1710047827
BBGW01000163
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
240
315
+
Lys
CTT
[ENA]
¡û
>W1710047832
BBGW01000249
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
151
76
-
Lys
CTT
[ENA]
¡û
>W1710605203
FWWS01000003
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
41533
41608
+
Lys
CTT
[ENA]
¡û
>W1710605204
FWWS01000003
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
41640
41713
+
Lys
CTT
[ENA]
¡û
>W1710608153
FXAR01000001
Actinomycetota
Corynebacterium pollutisoli [FXAR]
64221
64146
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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