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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300471 (38 seq.)
>W1711069429
LSFP01000022
Alphaproteobacteria
Zymomonas mobilis [LSFP]
3190
3115
-
Ala
TGC
[ENA]
¡û
>W131058808
ANFY01000003
Alphaproteobacteria
Sandarakinorhabdus sp. AAP62 [ANFY]
291481
291556
+
Ala
TGC
[ENA]
¡û
>W131160242
AQWK01000037
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
2023
2098
+
Ala
TGC
[ENA]
¡û
>W131237269
AUNU01000041
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-N14 [AUNU]
2277
2352
+
Ala
TGC
[ENA]
¡û
>C027937
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1915322
1915247
-
Ala
TGC
[Ensembl]
¡û
>C027940
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1901472
1901397
-
Ala
TGC
[Ensembl]
¡û
>C027946
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1616300
1616225
-
Ala
TGC
[Ensembl]
¡û
>WENV180285661
OBID01605057
[OBID] metagenome; sludge
236
161
-
Ala
TGC
[ENA]
¢þ
>WENV180690891
OCZS010033784
[OCZS] soil metagenome; soil
1007
932
-
Ala
TGC
[ENA]
¢þ
>WENV181123224
OEFO01178614
[OEFO] soil metagenome; soil
84
9
-
Ala
TGC
[ENA]
¢þ
>WENV181155227
OEID01036138
[OEID] soil metagenome; soil
126
51
-
Ala
TGC
[ENA]
¢þ
>WENV181192304
OEPS010557696
[OEPS] soil metagenome; soil
90
165
+
Ala
TGC
[ENA]
¢þ
>WENV181221855
OFCZ01000094
[OFCZ] metagenome; soil
3264
3339
+
Ala
TGC
[ENA]
¢þ
>WENV181234511
OFEU01000237
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
51065
50990
-
Ala
TGC
[ENA]
¢þ
>WENV183733587
PJTY01005428
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
637
712
+
Ala
TGC
[ENA]
¢þ
>WENV170018595
BBPD01000103
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3697
3622
-
Ala
TGC
[ENA]
¢þ
>WENV170645819
JPYU01092408
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
190
265
+
Ala
TGC
[ENA]
¢þ
>WENV170988776
MWVY01004883
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
1060
1135
+
Ala
TGC
[ENA]
¢þ
>WENV170988866
MWVY01019181
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
388
313
-
Ala
TGC
[ENA]
¢þ
>WENV170992848
MWWB01108824
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
183
258
+
Ala
TGC
[ENA]
¢þ
>WENV170993585
MWWB01362169
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
195
120
-
Ala
TGC
[ENA]
¢þ
>WENV170995069
MWWE01141266
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
195
120
-
Ala
TGC
[ENA]
¢þ
>WENV170995789
MWWF01060709
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
291
366
+
Ala
TGC
[ENA]
¢þ
>WENV170996277
MWWF01202133
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
52
127
+
Ala
TGC
[ENA]
¢þ
>C181088873
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1931076
1931001
-
Ala
TGC
-
¡û
>C181088876
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1917224
1917149
-
Ala
TGC
-
¡û
>C181088882
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1632075
1632000
-
Ala
TGC
-
¡û
>C191145700
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1915267
1915192
-
Ala
TGC
-
¡û
>C191145703
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1901415
1901340
-
Ala
TGC
-
¡û
>C191145709
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1616259
1616184
-
Ala
TGC
-
¡û
>W141779101
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
1921249
1921324
+
Ala
TGC
[ENA]
¡û
>W141820602
JQMZ01000001
Alphaproteobacteria
Oceanicaulis sp. HL-87 [JQMZ]
2348656
2348581
-
Ala
TGC
[ENA]
¡û
>W1911139281
NOXT01000120
Alphaproteobacteria
Sandarakinorhabdus cyanobacteriorum TH057 [NOXT]
38136
38061
-
Ala
TGC
[ENA]
¡û
>SRA1003316
SRR002326.387113
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
79
154
+
Ala
TGC
[SRA]
>C121015255
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1461440
1461515
+
Ala
TGC
[Ensembl]
¡û
>C121015258
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1475380
1475455
+
Ala
TGC
[Ensembl]
¡û
>C121015264
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1737564
1737639
+
Ala
TGC
[Ensembl]
¡û
>W1610909957
LSFP01000022
Alphaproteobacteria
Zymomonas mobilis [LSFP]
3190
3115
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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