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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300845 (80 seq.)
>W1711101989
LTNI01000025
Actinomycetota
Corynebacterium sp. HMSC22B11 [LTNI]
20792
20865
+
Arg
CCT
[ENA]
¡û
>W1711185945
LWNU01000045
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
26659
26584
-
Arg
CCT
[ENA]
¡û
>W131169257
AREP01000013
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
821
748
-
Arg
CCT
[ENA]
¡û
>W131159184
AQUV01000003
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
358544
358619
+
Arg
CCT
[ENA]
¡û
>WENV180008480
FLSB01039263
[FLSB] metagenome; saliva
101
27
-
Arg
CCT
[ENA]
¢þ
>WENV180698480
ODDH01006058
[ODDH] human metagenome; G_DNA_Buccal mucosa
608
682
+
Arg
CCT
[ENA]
¢þ
>WENV180732216
ODGY01000002
[ODGY] human metagenome; G_DNA_Supragingival plaque
437083
437009
-
Arg
CCT
[ENA]
¢þ
>WENV180749791
ODHS01000021
[ODHS] human metagenome; G_DNA_Supragingival plaque
34753
34827
+
Arg
CCT
[ENA]
¢þ
>WENV180764482
ODIB01000010
[ODIB] human metagenome; G_DNA_Supragingival plaque
198552
198478
-
Arg
CCT
[ENA]
¢þ
>WENV180781679
ODIP01001909
[ODIP] human metagenome; G_DNA_Supragingival plaque
5142
5068
-
Arg
CCT
[ENA]
¢þ
>WENV180787306
ODIS01003605
[ODIS] human metagenome; G_DNA_Supragingival plaque
5520
5446
-
Arg
CCT
[ENA]
¢þ
>WENV180794911
ODIZ01009968
[ODIZ] human metagenome; G_DNA_Tongue dorsum
864
790
-
Arg
CCT
[ENA]
¢þ
>WENV180803665
ODJG01000017
[ODJG] human metagenome; G_DNA_Supragingival plaque
130937
130863
-
Arg
CCT
[ENA]
¢þ
>WENV180808719
ODJK01000708
[ODJK] human metagenome; G_DNA_Subgingival plaque
8087
8013
-
Arg
CCT
[ENA]
¢þ
>WENV180812927
ODJO01000004
[ODJO] human metagenome; G_DNA_Supragingival plaque
375218
375144
-
Arg
CCT
[ENA]
¢þ
>WENV180822868
ODJW01000281
[ODJW] human metagenome; G_DNA_Supragingival plaque
2978
3052
+
Arg
CCT
[ENA]
¢þ
>WENV180824231
ODJX01001703
[ODJX] human metagenome; G_DNA_Supragingival plaque
5109
5035
-
Arg
CCT
[ENA]
¢þ
>WENV180831902
ODKC01000212
[ODKC] human metagenome; G_DNA_Supragingival plaque
28774
28700
-
Arg
CCT
[ENA]
¢þ
>WENV180831914
ODKC01000243
[ODKC] human metagenome; G_DNA_Supragingival plaque
29917
29991
+
Arg
CCT
[ENA]
¢þ
>WENV180834343
ODKD01014494
[ODKD] human metagenome; G_DNA_Supragingival plaque
578
504
-
Arg
CCT
[ENA]
¢þ
>WENV180834848
ODKE01000037
[ODKE] human metagenome; G_DNA_Supragingival plaque
52763
52689
-
Arg
CCT
[ENA]
¢þ
>WENV180842853
ODKN01000037
[ODKN] human metagenome; G_DNA_Supragingival plaque
96418
96344
-
Arg
CCT
[ENA]
¢þ
>WENV180847305
ODKT01061256
[ODKT] human metagenome; G_DNA_Supragingival plaque
846
920
+
Arg
CCT
[ENA]
¢þ
>WENV180859140
ODLD01000029
[ODLD] human metagenome; G_DNA_Supragingival plaque
35054
35128
+
Arg
CCT
[ENA]
¢þ
>WENV180875360
ODLQ01106744
[ODLQ] human metagenome; G_DNA_Tongue dorsum
128
202
+
Arg
CCT
[ENA]
¢þ
>WENV180888025
ODMN01000018
[ODMN] human metagenome; G_DNA_Supragingival plaque
34761
34835
+
Arg
CCT
[ENA]
¢þ
>WENV180891746
ODMQ01008725
[ODMQ] human metagenome; G_DNA_Supragingival plaque
609
683
+
Arg
CCT
[ENA]
¢þ
>WENV180933872
ODTR01004186
[ODTR] human metagenome; G_DNA_Supragingival plaque
399
325
-
Arg
CCT
[ENA]
¢þ
>WENV180934876
ODTS01006556
[ODTS] human metagenome; G_DNA_Subgingival plaque
1248
1174
-
Arg
CCT
[ENA]
¢þ
>WENV180943650
ODUC01001409
[ODUC] human metagenome; G_DNA_Supragingival plaque
1351
1277
-
Arg
CCT
[ENA]
¢þ
>WENV180943736
ODUC01002154
[ODUC] human metagenome; G_DNA_Supragingival plaque
1963
1889
-
Arg
CCT
[ENA]
¢þ
>WENV180958126
ODUL01000505
[ODUL] human metagenome; G_DNA_Supragingival plaque
5136
5062
-
Arg
CCT
[ENA]
¢þ
>WENV180980226
ODVE01000001
[ODVE] human metagenome; G_DNA_Supragingival plaque
37316
37390
+
Arg
CCT
[ENA]
¢þ
>WENV180982578
ODVF01000121
[ODVF] human metagenome; G_DNA_Supragingival plaque
18108
18034
-
Arg
CCT
[ENA]
¢þ
>WENV181002060
ODVX01000008
[ODVX] human metagenome; G_DNA_Supragingival plaque
34887
34961
+
Arg
CCT
[ENA]
¢þ
>WENV181007363
ODWE01000041
[ODWE] human metagenome; G_DNA_Supragingival plaque
34751
34825
+
Arg
CCT
[ENA]
¢þ
>WENV181018699
ODWU01000029
[ODWU] human metagenome; G_DNA_Supragingival plaque
34768
34842
+
Arg
CCT
[ENA]
¢þ
>WENV181049445
ODYD01000220
[ODYD] human metagenome; G_DNA_Supragingival plaque
873
947
+
Arg
CCT
[ENA]
¢þ
>WENV181062962
ODYP01000014
[ODYP] human metagenome; G_DNA_Supragingival plaque
160506
160432
-
Arg
CCT
[ENA]
¢þ
>WENV181075735
OEAP01000230
[OEAP] human metagenome; G_DNA_Supragingival plaque
6699
6625
-
Arg
CCT
[ENA]
¢þ
>WENV181079120
OEAS01002214
[OEAS] human metagenome; G_DNA_Supragingival plaque
5071
4997
-
Arg
CCT
[ENA]
¢þ
>WENV181082834
OEAV01000783
[OEAV] human metagenome; G_DNA_Supragingival plaque
5284
5358
+
Arg
CCT
[ENA]
¢þ
>WENV181083085
OEAV01002280
[OEAV] human metagenome; G_DNA_Supragingival plaque
5314
5388
+
Arg
CCT
[ENA]
¢þ
>WENV181121044
OEFL01000227
[OEFL] human metagenome; G_DNA_Supragingival plaque
13481
13407
-
Arg
CCT
[ENA]
¢þ
>WENV181137025
OEGJ01000037
[OEGJ] human metagenome; G_DNA_Supragingival plaque
34870
34944
+
Arg
CCT
[ENA]
¢þ
>WENV181143195
OEHM01000224
[OEHM] human metagenome; G_DNA_Supragingival plaque
5122
5048
-
Arg
CCT
[ENA]
¢þ
>WENV181152115
OEIA01000127
[OEIA] human metagenome; G_DNA_Supragingival plaque
34868
34942
+
Arg
CCT
[ENA]
¢þ
>WENV181160170
OEIK01002686
[OEIK] human metagenome; G_DNA_Supragingival plaque
2228
2302
+
Arg
CCT
[ENA]
¢þ
>WENV181177176
OEJS01000069
[OEJS] human metagenome; G_DNA_Supragingival plaque
5141
5067
-
Arg
CCT
[ENA]
¢þ
>WENV181181578
OEJV01000005
[OEJV] human metagenome; G_DNA_Supragingival plaque
34856
34930
+
Arg
CCT
[ENA]
¢þ
>WENV182636049
OJKZ01000160
[OJKZ] metagenome; surface
10390
10317
-
Arg
CCT
[ENA]
¢þ
>WENV182641091
OJLE01005213
[OJLE] metagenome; surface
132
59
-
Arg
CCT
[ENA]
¢þ
>WENV182641883
OJLK01006554
[OJLK] metagenome; surface
152
225
+
Arg
CCT
[ENA]
¢þ
>WENV182642392
OJLM01005129
[OJLM] metagenome; surface
1047
1120
+
Arg
CCT
[ENA]
¢þ
>WENV182643914
OJLW01002953
[OJLW] metagenome; surface
3021
2948
-
Arg
CCT
[ENA]
¢þ
>WENV182644776
OJLY01000341
[OJLY] metagenome; surface
26669
26596
-
Arg
CCT
[ENA]
¢þ
>WENV182671620
OJNM01000563
[OJNM] metagenome; surface
10464
10391
-
Arg
CCT
[ENA]
¢þ
>C08003926
AM942444
Actinomycetota
Corynebacterium urealyticum DSM 7109 [AM942444]
1783149
1783222
+
Arg
CCT
[Ensembl]
¡û
>WENV183508479
OMHD01005703
[OMHD] human oral metagenome; human oral
78
4
-
Arg
CCT
[ENA]
¢þ
>WENV183509364
OMHI01000100
[OMHI] human oral metagenome; human oral
598
672
+
Arg
CCT
[ENA]
¢þ
>WENV170723555
LSQX01273060
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1590
1665
+
Arg
CCT
[ENA]
¢þ
>C181215114
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
1537802
1537875
+
Arg
CCT
-
¡û
>C181226224
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
1702402
1702475
+
Arg
CCT
-
¡û
>C181226727
LT906481
Actinomycetota
Corynebacterium urealyticum NCTC12011 [LT906481]
1094119
1094192
+
Arg
CCT
-
¡û
>C191094601
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
2588299
2588224
-
Arg
CCT
-
¡û
>C191213055
LR134504
Actinomycetota
Corynebacterium matruchotii NCTC10206 [LR134504]
482650
482576
-
Arg
CCT
-
¡û
>W1910339892
FTLL01000010
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
33403
33476
+
Arg
CCT
[ENA]
¡û
>W1911621448
PQNE01000057
Actinomycetota
Corynebacterium bovis WCM5 [PQNE]
6456
6529
+
Arg
CCT
[ENA]
¡û
>W1911621668
PQNI01000182
Actinomycetota
Corynebacterium bovis WCM1 [PQNI]
2321
2248
-
Arg
CCT
[ENA]
¡û
>W1911621767
PQNK01000012
Actinomycetota
Corynebacterium bovis F6900 [PQNK]
34615
34542
-
Arg
CCT
[ENA]
¡û
>W1911621807
PQNL01000090
Actinomycetota
Corynebacterium bovis CUAMC1 - SMALL [PQNL]
2322
2249
-
Arg
CCT
[ENA]
¡û
>W1911621945
PQNO01000037
Actinomycetota
Corynebacterium bovis 17-0240 - LARGE [PQNO]
5148
5075
-
Arg
CCT
[ENA]
¡û
>W1911622015
PQNP01000019
Actinomycetota
Corynebacterium bovis 16-3465 [PQNP]
33217
33144
-
Arg
CCT
[ENA]
¡û
>W1911622244
PQNU01000006
Actinomycetota
Corynebacterium bovis 12-5346 [PQNU]
94301
94374
+
Arg
CCT
[ENA]
¡û
>W1911622398
PQNX01000002
Actinomycetota
Corynebacterium bovis 4826 [PQNX]
36774
36701
-
Arg
CCT
[ENA]
¡û
>W1810058166
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
50946
50873
-
Arg
CCT
[ENA]
¡û
>C151034737
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
656338
656263
-
Arg
CCT
[Ensembl]
¡û
>W1511644844
LDYD01000009
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
83695
83622
-
Arg
CCT
[ENA]
¡û
>W1610068185
BCRD01000001
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
40105
40030
-
Arg
CCT
[ENA]
¡û
>W1710065558
BCRD01000001
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
40105
40030
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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