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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300936 (82 seq.)
>W1710797330
LJSZ01000009
Bacillota
Clostridium sporogenes [LJSZ]
29337
29262
-
Ala
TGC
[ENA]
¡û
>W1710797391
LJSZ01000048
Bacillota
Clostridium sporogenes [LJSZ]
1170
1095
-
Ala
TGC
[ENA]
¡û
>W1710797401
LJSZ01000069
Bacillota
Clostridium sporogenes [LJSZ]
346
421
+
Ala
TGC
[ENA]
¡û
>WENV180226775
OBBS01000781
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
1005
930
-
Ala
TGC
[ENA]
¢þ
>WENV180402570
OBRP01013286
[OBRP] human gut metagenome; ENVO:feces
197
122
-
Ala
TGC
[ENA]
¢þ
>WENV180623755
OCQF01008030
[OCQF] human gut metagenome; Infant 2 DOL 14 gut
47
122
+
Ala
TGC
[ENA]
¢þ
>WENV180631911
OCQY01103358
[OCQY] human gut metagenome; human gut
380
306
-
Ala
TGC
[ENA]
¢þ
>WENV180894302
ODMR01055591
[ODMR] human metagenome; G_DNA_Stool
248
322
+
Ala
TGC
[ENA]
¢þ
>WENV180894352
ODMR01063534
[ODMR] human metagenome; G_DNA_Stool
351
425
+
Ala
TGC
[ENA]
¢þ
>WENV180963022
ODUN01054614
[ODUN] human metagenome; G_DNA_Stool
814
740
-
Ala
TGC
[ENA]
¢þ
>WENV181247557
OFFK01052090
[OFFK] mouse gut metagenome; faeces
923
849
-
Ala
TGC
[ENA]
¢þ
>WENV181271609
OFGF01084231
[OFGF] mouse gut metagenome; faeces
20
94
+
Ala
TGC
[ENA]
¢þ
>WENV181329338
OFLW01002136
[OFLW] metagenome; faeces
1291
1366
+
Ala
TGC
[ENA]
¢þ
>WENV181334437
OFMB01059212
[OFMB] human gut metagenome; human gut
23
98
+
Ala
TGC
[ENA]
¢þ
>WENV181642170
OGNF01099367
[OGNF] metagenome; Human gut stool
490
416
-
Ala
TGC
[ENA]
¢þ
>WENV181684468
OGOV01009790
[OGOV] human gut metagenome; faeces
3610
3535
-
Ala
TGC
[ENA]
¢þ
>WENV181739233
OGQI01088868
[OGQI] human gut metagenome; faeces
349
275
-
Ala
TGC
[ENA]
¢þ
>WENV181811487
OGSY01004623
[OGSY] human gut metagenome; fecal sample 5 from infant 8
747
672
-
Ala
TGC
[ENA]
¢þ
>WENV181895919
OGXR01058639
[OGXR] human gut metagenome; faeces
490
416
-
Ala
TGC
[ENA]
¢þ
>WENV182110037
OHIN01027115
[OHIN] human gut metagenome; feces
829
755
-
Ala
TGC
[ENA]
¢þ
>WENV182125696
OHJS01036373
[OHJS] human gut metagenome; feces
490
416
-
Ala
TGC
[ENA]
¢þ
>WENV182126598
OHJT01052342
[OHJT] human gut metagenome; feces
123
197
+
Ala
TGC
[ENA]
¢þ
>WENV182241496
OHSF01040081
[OHSF] human gut metagenome; feces
151
225
+
Ala
TGC
[ENA]
¢þ
>WENV182262201
OHTM01044904
[OHTM] human gut metagenome; feces
224
298
+
Ala
TGC
[ENA]
¢þ
>W141231563
BAUF01000004
Bacillota
Clostridium botulinum B str. Osaka05 [BAUF]
270
345
+
Ala
TGC
[ENA]
¡û
>WENV182636550
OJKZ01019308
[OJKZ] metagenome; surface
773
698
-
Ala
TGC
[ENA]
¢þ
>WENV182658394
OJMK01067649
[OJMK] human gut metagenome; feces
422
496
+
Ala
TGC
[ENA]
¢þ
>WENV182680060
OJNT01033383
[OJNT] human gut metagenome; human gut
224
298
+
Ala
TGC
[ENA]
¢þ
>WENV182815101
OJYO01001844
[OJYO] human gut metagenome; human gut
2293
2218
-
Ala
TGC
[ENA]
¢þ
>WENV182885855
OKSC01032909
[OKSC] human gut metagenome; faeces
1183
1109
-
Ala
TGC
[ENA]
¢þ
>WENV183088214
OLJU01001030
[OLJU] human gut metagenome; human gut
358
283
-
Ala
TGC
[ENA]
¢þ
>WENV183253437
OLRI01087016
[OLRI] human gut metagenome; faeces
226
299
+
Ala
TGC
[ENA]
¢þ
>WENV183315321
OLVR01070215
[OLVR] human gut metagenome; faeces
111
185
+
Ala
TGC
[ENA]
¢þ
>WENV183411208
OMAK01013063
[OMAK] human gut metagenome; feces
948
874
-
Ala
TGC
[ENA]
¢þ
>WENV183477943
OMFC01043719
[OMFC] human gut metagenome; feces
490
416
-
Ala
TGC
[ENA]
¢þ
>WENV183532182
OOAC01063004
[OOAC] human gut metagenome; human gut
490
416
-
Ala
TGC
[ENA]
¢þ
>WENV170563052
CZCB01009214
[CZCB] anaerobic digester metagenome; anaerobic digester
575
650
+
Ala
TGC
[ENA]
¢þ
>WENV170684530
LFRM01044320
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2833
2758
-
Ala
TGC
[ENA]
¢þ
>W141460700
JFGC01001065
Bacillota
Clostridium botulinum [JFGC]
461
536
+
Ala
TGC
[ENA]
¡û
>W141460701
JFGC01001073
Bacillota
Clostridium botulinum [JFGC]
818
743
-
Ala
TGC
[ENA]
¡û
>W141460713
JFGC01001091
Bacillota
Clostridium botulinum [JFGC]
546
621
+
Ala
TGC
[ENA]
¡û
>W141460994
JFGG01000388
Bacillota
Clostridium botulinum [JFGG]
1810
1885
+
Ala
TGC
[ENA]
¡û
>W141461066
JFGH01000281
Bacillota
Clostridium botulinum [JFGH]
254
329
+
Ala
TGC
[ENA]
¡û
>C181114033
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
3585364
3585289
-
Ala
TGC
-
¡û
>C181114036
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
3378150
3378075
-
Ala
TGC
-
¡û
>C181195326
CP031097
Bacillota
Clostridium botulinum CFSAN034200 [CP031097]
1977036
1976961
-
Ala
TGC
-
¡û
>C181195351
CP031098
Bacillota
Clostridium botulinum CFSAN034202 [CP031098]
2969277
2969352
+
Ala
TGC
-
¡û
>C181195408
CP031098
Bacillota
Clostridium botulinum CFSAN034202 [CP031098]
2338848
2338773
-
Ala
TGC
-
¡û
>W1910874047
NDYA01000032
Bacillota
Finegoldia magna T160124 [NDYA]
134
209
+
Ala
TGC
[ENA]
¡û
>W1910884579
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
601702
601777
+
Ala
TGC
[ENA]
¡û
>W1910884582
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
806603
806678
+
Ala
TGC
[ENA]
¡û
>W1911613725
POTG01000008
Bacillota
Clostridium botulinum CDC69068 [POTG]
354
429
+
Ala
TGC
[ENA]
¡û
>W1911613729
POTG01000017
Bacillota
Clostridium botulinum CDC69068 [POTG]
313
238
-
Ala
TGC
[ENA]
¡û
>W1911613733
POTG01000020
Bacillota
Clostridium botulinum CDC69068 [POTG]
34274
34199
-
Ala
TGC
[ENA]
¡û
>W1911695238
QMBG01000043
Bacillota
Clostridium tetani 1240 [QMBG]
212
137
-
Ala
TGC
[ENA]
¡û
>W1911695247
QMBG01000051
Bacillota
Clostridium tetani 1240 [QMBG]
76
1
-
Ala
TGC
[ENA]
¡û
>W1911695460
QMBK01000029
Bacillota
Clostridium tetani Strain 3 [QMBK]
227
302
+
Ala
TGC
[ENA]
¡û
>W1911695463
QMBK01000034
Bacillota
Clostridium tetani Strain 3 [QMBK]
262
187
-
Ala
TGC
[ENA]
¡û
>W1911695509
QMBL01000026
Bacillota
Clostridium tetani Harvard [QMBL]
433
358
-
Ala
TGC
[ENA]
¡û
>W1911695512
QMBL01000032
Bacillota
Clostridium tetani Harvard [QMBL]
212
137
-
Ala
TGC
[ENA]
¡û
>W1911721911
QRAB01000008
Bacillota
Clostridium botulinum ATCC 17841 [QRAB]
423
498
+
Ala
TGC
[ENA]
¡û
>W1911721927
QRAB01000024
Bacillota
Clostridium botulinum ATCC 17841 [QRAB]
201
276
+
Ala
TGC
[ENA]
¡û
>W1911721929
QRAB01000027
Bacillota
Clostridium botulinum ATCC 17841 [QRAB]
51
126
+
Ala
TGC
[ENA]
¡û
>W1511580450
LARK01000054
Bacillota
Heliobacterium sp. N15.MGS-306 [LARK]
164
238
+
Ala
TGC
[ENA]
¡û
>W1511699268
LGIK01000024
Bacillota
Clostridium botulinum ATCC 17862 [LGIK]
203
278
+
Ala
TGC
[ENA]
¡û
>W1511699270
LGIK01000027
Bacillota
Clostridium botulinum ATCC 17862 [LGIK]
316
241
-
Ala
TGC
[ENA]
¡û
>W1511699272
LGIK01000029
Bacillota
Clostridium botulinum ATCC 17862 [LGIK]
33007
32932
-
Ala
TGC
[ENA]
¡û
>W1610026276
AUYY01000002
Bacillota
Clostridium botulinum B2 267 [AUYY]
80
155
+
Ala
TGC
[ENA]
¡û
>W1610026351
AUYZ01000002
Bacillota
Clostridium botulinum B2 433 [AUYZ]
80
155
+
Ala
TGC
[ENA]
¡û
>W1610026484
AUZC01000002
Bacillota
Clostridium botulinum F 357 [AUZC]
252
327
+
Ala
TGC
[ENA]
¡û
>W1610602581
LFPI01000017
Bacillota
Clostridium botulinum [LFPI]
34231
34156
-
Ala
TGC
[ENA]
¡û
>W1610602599
LFPI01000030
Bacillota
Clostridium botulinum [LFPI]
373
448
+
Ala
TGC
[ENA]
¡û
>W1610604639
LFRB01000033
Bacillota
Clostridium botulinum [LFRB]
28373
28298
-
Ala
TGC
[ENA]
¡û
>W1610661287
LJSZ01000009
Bacillota
Clostridium sporogenes [LJSZ]
29337
29262
-
Ala
TGC
[ENA]
¡û
>W1610661348
LJSZ01000048
Bacillota
Clostridium sporogenes [LJSZ]
1170
1095
-
Ala
TGC
[ENA]
¡û
>W1610661358
LJSZ01000069
Bacillota
Clostridium sporogenes [LJSZ]
346
421
+
Ala
TGC
[ENA]
¡û
>W1710022325
AUYY01000002
Bacillota
Clostridium botulinum B2 267 [AUYY]
80
155
+
Ala
TGC
[ENA]
¡û
>W1710022400
AUYZ01000002
Bacillota
Clostridium botulinum B2 433 [AUYZ]
80
155
+
Ala
TGC
[ENA]
¡û
>W1710022533
AUZC01000002
Bacillota
Clostridium botulinum F 357 [AUZC]
252
327
+
Ala
TGC
[ENA]
¡û
>W1710724097
LFPI01000017
Bacillota
Clostridium botulinum [LFPI]
34231
34156
-
Ala
TGC
[ENA]
¡û
>W1710724115
LFPI01000030
Bacillota
Clostridium botulinum [LFPI]
373
448
+
Ala
TGC
[ENA]
¡û
>W1710726155
LFRB01000033
Bacillota
Clostridium botulinum [LFRB]
28373
28298
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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