This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300953 (58 seq.)
>W131224660
AUCZ01000003
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
20586
20661
+
Lys
TTT
[ENA]
¡û
>W131224661
AUCZ01000003
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
20796
20871
+
Lys
TTT
[ENA]
¡û
>W1711503332
MKTM01000032
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
28547
28472
-
Lys
TTT
[ENA]
¡û
>W1711503333
MKTM01000032
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
28441
28366
-
Lys
TTT
[ENA]
¡û
>W1711503335
MKTM01000032
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
28149
28074
-
Lys
TTT
[ENA]
¡û
>W1711503336
MKTM01000032
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
28043
27968
-
Lys
TTT
[ENA]
¡û
>C171016692
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
3526029
3525954
-
Lys
TTT
-
¡û
>C171016693
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
3525922
3525847
-
Lys
TTT
-
¡û
>W141093446
AVBI01000017
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
328
253
-
Lys
TTT
[ENA]
¡û
>W141093447
AVBI01000017
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
223
148
-
Lys
TTT
[ENA]
¡û
>W141094595
AVCS01000011
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
73333
73258
-
Lys
TTT
[ENA]
¡û
>W141094596
AVCS01000011
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
73227
73152
-
Lys
TTT
[ENA]
¡û
>W141096649
AVFO01000001
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
32002
32077
+
Lys
TTT
[ENA]
¡û
>W141096650
AVFO01000001
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
32108
32183
+
Lys
TTT
[ENA]
¡û
>W141097134
AVGG01000017
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
104488
104413
-
Lys
TTT
[ENA]
¡û
>W141097135
AVGG01000017
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
104382
104307
-
Lys
TTT
[ENA]
¡û
>WENV181836537
OGVJ01011253
[OGVJ] freshwater metagenome; freshwater
163
90
-
Lys
TTT
[ENA]
¢þ
>WENV181842822
OGVT01024890
[OGVT] freshwater metagenome; freshwater
267
194
-
Lys
TTT
[ENA]
¢þ
>WENV181842823
OGVT01024890
[OGVT] freshwater metagenome; freshwater
165
92
-
Lys
TTT
[ENA]
¢þ
>WENV183729715
PJTR01000029
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
22076
22149
+
Lys
TTT
[ENA]
¢þ
>WENV183729716
PJTR01000029
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
22182
22255
+
Lys
TTT
[ENA]
¢þ
>WENV183729718
PJTR01000029
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
23545
23618
+
Lys
TTT
[ENA]
¢þ
>WENV183731176
PJTS01016374
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
557
630
+
Lys
TTT
[ENA]
¢þ
>WENV183731208
PJTS01019275
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
698
625
-
Lys
TTT
[ENA]
¢þ
>C181175897
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
3921188
3921261
+
Lys
TTT
-
¡û
>C181175898
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
3921287
3921360
+
Lys
TTT
-
¡û
>C181202208
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3117750
3117823
+
Lys
TTT
-
¡û
>C181202209
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3117851
3117924
+
Lys
TTT
-
¡û
>W141702905
JMLU01000026
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
24641
24716
+
Lys
TTT
[ENA]
¡û
>W141702906
JMLU01000026
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
24743
24818
+
Lys
TTT
[ENA]
¡û
>C141012344
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
1041806
1041731
-
Lys
TTT
-
¡û
>C141012345
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
1041705
1041630
-
Lys
TTT
-
¡û
>W1810694850
QLMI01000001
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
143516
143443
-
Lys
TTT
[ENA]
¡û
>W1810694851
QLMI01000001
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
143414
143341
-
Lys
TTT
[ENA]
¡û
>W1810762851
QQAR01000006
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
22054
22127
+
Lys
TTT
[ENA]
¡û
>W1810762852
QQAR01000006
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
22162
22235
+
Lys
TTT
[ENA]
¡û
>C161042848
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
3526029
3525954
-
Lys
TTT
-
¡û
>C161042849
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
3525922
3525847
-
Lys
TTT
-
¡û
>W1610534996
JRLU01000012
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
75745
75670
-
Lys
TTT
[ENA]
¡û
>W1610534997
JRLU01000012
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
75640
75565
-
Lys
TTT
[ENA]
¡û
>W1610535055
JRLW01000008
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
20250
20325
+
Lys
TTT
[ENA]
¡û
>W1610535056
JRLW01000008
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
20460
20535
+
Lys
TTT
[ENA]
¡û
>W1610535190
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
98298
98223
-
Lys
TTT
[ENA]
¡û
>W1610535191
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
98192
98117
-
Lys
TTT
[ENA]
¡û
>W1710505756
FMTY01000001
Bacteroidota
Flavobacterium saliperosum [FMTY]
26063
26138
+
Lys
TTT
[ENA]
¡û
>W1710505757
FMTY01000001
Bacteroidota
Flavobacterium saliperosum [FMTY]
26169
26244
+
Lys
TTT
[ENA]
¡û
>W1710574123
FOYA01000010
Bacteroidota
Flavobacterium akiainvivens [FOYA]
142266
142341
+
Lys
TTT
[ENA]
¡û
>W1710574124
FOYA01000010
Bacteroidota
Flavobacterium akiainvivens [FOYA]
142365
142440
+
Lys
TTT
[ENA]
¡û
>W1710588432
FQZI01000004
Bacteroidota
Flavobacterium terrae [FQZI]
34847
34922
+
Lys
TTT
[ENA]
¡û
>W1710588433
FQZI01000004
Bacteroidota
Flavobacterium terrae [FQZI]
34953
35028
+
Lys
TTT
[ENA]
¡û
>W1710593822
FRYK01000002
Bacteroidota
Flavobacterium cucumis [FRYK]
105827
105902
+
Lys
TTT
[ENA]
¡û
>W1710593823
FRYK01000002
Bacteroidota
Flavobacterium cucumis [FRYK]
105928
106003
+
Lys
TTT
[ENA]
¡û
>W1710637232
JRLU01000012
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
75745
75670
-
Lys
TTT
[ENA]
¡û
>W1710637233
JRLU01000012
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
75640
75565
-
Lys
TTT
[ENA]
¡û
>W1710637291
JRLW01000008
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
20250
20325
+
Lys
TTT
[ENA]
¡û
>W1710637292
JRLW01000008
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
20460
20535
+
Lys
TTT
[ENA]
¡û
>W1710637426
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
98298
98223
-
Lys
TTT
[ENA]
¡û
>W1710637427
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
98192
98117
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK