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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301032 (32 seq.)
>W1710923733
LOBU02000015
Actinomycetota
Amycolatopsis regifaucium [LOBU]
328339
328266
-
Met
CAT
[ENA]
¡û
>W1711004817
LQMT02000023
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
65567
65494
-
Met
CAT
[ENA]
¡û
>W1711662749
MQUQ01000015
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
692438
692511
+
Met
CAT
[ENA]
¡û
>W1711765429
MUXN01000014
Actinomycetota
Amycolatopsis azurea DSM 43854 [MUXN]
133900
133827
-
Met
CAT
[ENA]
¡û
>W131064603
ANMG01000006
Actinomycetota
Amycolatopsis azurea DSM 43854 [ANMG]
147816
147889
+
Met
CAT
[ENA]
¡û
>W131091943
AOHO01000048
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
602479
602552
+
Met
CAT
[ENA]
¡û
>W131164053
ARAF01000002
Actinomycetota
Amycolatopsis alba DSM 44262 [ARAF]
2223612
2223685
+
Met
CAT
[ENA]
¡û
>W131191611
ASJB01000071
Actinomycetota
Amycolatopsis orientalis DSM 40040 = KCTC 9412 [ASJB]
57510
57583
+
Met
CAT
[ENA]
¡û
>WENV180023917
FTIF01003880
[FTIF] metagenome; soil
1896
1823
-
Met
CAT
[ENA]
¢þ
>WENV183748862
PPFU01090373
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1547
1474
-
Met
CAT
[ENA]
¢þ
>W141451888
JFBM01000001
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
41579
41652
+
Met
CAT
[ENA]
¡û
>C181028449
CP017780
Actinomycetota
Amycolatopsis sp. BJA-103 [CP017780]
8373737
8373810
+
Met
CAT
-
¡û
>C191130625
CP034766
Actinomycetota
Rhodococcus sp. X156 [CP034766]
3054122
3054045
-
Met
CAT
-
¡û
>W141806113
JPLW01000001
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
617147
617074
-
Met
CAT
[ENA]
¡û
>W1910812666
MVFD01000002
Actinomycetota
Amycolatopsis sp. BJA-103 [MVFD]
1004032
1004105
+
Met
CAT
[ENA]
¡û
>W1911071517
NMQT01000007
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
40073
40146
+
Met
CAT
[ENA]
¡û
>W1911071579
NMQU01000015
Actinomycetota
Amycolatopsis alba DSM 44262 [NMQU]
84656
84583
-
Met
CAT
[ENA]
¡û
>W1911676789
QHHW01000054
Actinomycetota
Amycolatopsis sp. WAC 01375 [QHHW]
188860
188933
+
Met
CAT
[ENA]
¡û
>W1911676813
QHHX01000002
Actinomycetota
Amycolatopsis sp. WAC 01416 [QHHX]
522057
522130
+
Met
CAT
[ENA]
¡û
>W1911678691
QHJI01000008
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
71238
71311
+
Met
CAT
[ENA]
¡û
>W1911678754
QHJJ01000005
Actinomycetota
Amycolatopsis sp. WAC 04182 [QHJJ]
61575
61648
+
Met
CAT
[ENA]
¡û
>W1911678780
QHJK01000001
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
802418
802491
+
Met
CAT
[ENA]
¡û
>W1911678913
QHJM01000009
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
198954
199027
+
Met
CAT
[ENA]
¡û
>W1911679691
QHKL01000001
Actinomycetota
Amycolatopsis sp. WAC 01376 [QHKL]
150971
150898
-
Met
CAT
[ENA]
¡û
>C151018952
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
41579
41652
+
Met
CAT
-
¡û
>C151040863
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
7811543
7811470
-
Met
CAT
[Ensembl]
¡û
>C131003613
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
632320
632393
+
Met
CAT
[Ensembl]
¡û
>W1610781188
LOBU01000001
Actinomycetota
Amycolatopsis regifaucium [LOBU]
86936
86863
-
Met
CAT
[ENA]
¡û
>W1610855426
LQMT01000164
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
14305
14378
+
Met
CAT
[ENA]
¡û
>W1710536188
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
3353550
3353477
-
Met
CAT
[ENA]
¡û
>W1710563376
FOPQ01000001
Actinomycetota
Amycolatopsis regifaucium [FOPQ]
487048
487121
+
Met
CAT
[ENA]
¡û
>W1710773690
LIWC01000004
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
139049
139122
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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