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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301034 (62 seq.)
>C171000127
AP017913
Bacteroidota
Candidatus Azobacteroides pseudotrichonymphae [AP017913, AP017914]
87538
87611
+
Phe
GAA
-
¡û
>WENV180095089
MTBK01048346
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
3313
3240
-
Phe
GAA
[ENA]
¡û
>WENV180374956
OBOK01052001
[OBOK] marine metagenome; seawater
413
340
-
Phe
GAA
[ENA]
¡û
>WENV180475309
OBYU01002710
[OBYU] human gut metagenome; faeces
1438
1511
+
Phe
GAA
[ENA]
¡û
>WENV180526877
OCHI01092833
[OCHI] human gut metagenome; human gut
78
151
+
Phe
GAA
[ENA]
¡û
>WENV180587937
OCOO01108059
[OCOO] marine metagenome; seawater
179
106
-
Phe
GAA
[ENA]
¡û
>WENV180590193
OCOS01145386
[OCOS] marine metagenome; Sterile flask
233
160
-
Phe
GAA
[ENA]
¡û
>WENV180761660
ODHZ01019176
[ODHZ] human metagenome; G_DNA_Stool
1422
1495
+
Phe
GAA
[ENA]
¡û
>WENV180772503
ODIH01107163
[ODIH] human metagenome; G_DNA_Stool
176
249
+
Phe
GAA
[ENA]
¡û
>WENV180839973
ODKJ01000345
[ODKJ] human metagenome; G_DNA_Stool
30726
30653
-
Phe
GAA
[ENA]
¡û
>WENV180886297
ODME01041154
[ODME] human metagenome; G_DNA_Stool
608
681
+
Phe
GAA
[ENA]
¡û
>WENV180894825
ODMR01298874
[ODMR] human metagenome; G_DNA_Stool
203
130
-
Phe
GAA
[ENA]
¡û
>WENV180915471
ODTB01001345
[ODTB] human metagenome; G_DNA_Stool
9576
9503
-
Phe
GAA
[ENA]
¡û
>WENV180971971
ODUU01159710
[ODUU] human metagenome; G_DNA_Stool
156
229
+
Phe
GAA
[ENA]
¡û
>WENV181015100
ODWP01006498
[ODWP] human metagenome; G_DNA_Stool
609
682
+
Phe
GAA
[ENA]
¡û
>WENV181346360
OFML01013942
[OFML] human gut metagenome; human gut
91
164
+
Phe
GAA
[ENA]
¡û
>WENV181351288
OFMP01003591
[OFMP] human gut metagenome; human gut
3199
3272
+
Phe
GAA
[ENA]
¡û
>WENV181352232
OFMQ01001002
[OFMQ] human gut metagenome; human gut
3114
3187
+
Phe
GAA
[ENA]
¡û
>WENV181614090
OGLV01006354
[OGLV] metagenome; Human gut stool
959
1032
+
Phe
GAA
[ENA]
¡û
>WENV181637945
OGNC01000022
[OGNC] metagenome; Human gut stool
53066
53139
+
Phe
GAA
[ENA]
¡û
>WENV181650670
OGNU01017976
[OGNU] metagenome; Human gut stool
390
463
+
Phe
GAA
[ENA]
¡û
>WENV181673353
OGOO01002316
[OGOO] human gut metagenome; faeces
10960
11033
+
Phe
GAA
[ENA]
¡û
>WENV181722625
OGPW01000076
[OGPW] human gut metagenome; faeces
52632
52559
-
Phe
GAA
[ENA]
¡û
>WENV181747650
OGQN01079656
[OGQN] human gut metagenome; faeces
19
92
+
Phe
GAA
[ENA]
¡û
>WENV181750286
OGQP01002722
[OGQP] human gut metagenome; faeces
2234
2161
-
Phe
GAA
[ENA]
¡û
>WENV181764166
OGQX01041130
[OGQX] human gut metagenome; faeces
687
760
+
Phe
GAA
[ENA]
¡û
>WENV181829708
OGUN01048453
[OGUN] human gut metagenome; faeces
867
940
+
Phe
GAA
[ENA]
¡û
>WENV181873126
OGWZ01025528
[OGWZ] human gut metagenome; faeces
842
915
+
Phe
GAA
[ENA]
¡û
>WENV181928014
OGYN01058643
[OGYN] human gut metagenome; faeces
840
912
+
Phe
GAA
[ENA]
¡û
>WENV181996496
OHAU01000081
[OHAU] human gut metagenome; faeces
53006
52933
-
Phe
GAA
[ENA]
¡û
>WENV182538300
OIXH01070710
[OIXH] human gut metagenome; faeces
150
77
-
Phe
GAA
[ENA]
¡û
>WENV182617025
OJKC01097578
[OJKC] metagenome; faeces
239
166
-
Phe
GAA
[ENA]
¡û
>WENV182657620
OJMK01004735
[OJMK] human gut metagenome; feces
6070
5997
-
Phe
GAA
[ENA]
¡û
>WENV182791809
OJSN01024493
[OJSN] human gut metagenome; human gut
421
494
+
Phe
GAA
[ENA]
¡û
>WENV182801981
OJUG01003464
[OJUG] human gut metagenome; human gut
4888
4815
-
Phe
GAA
[ENA]
¡û
>WENV182875995
OKRX01009503
[OKRX] human gut metagenome; faeces
2878
2805
-
Phe
GAA
[ENA]
¡û
>WENV183032266
OLFY01000042
[OLFY] human gut metagenome; faeces
171641
171568
-
Phe
GAA
[ENA]
¡û
>WENV183046540
OLGF01000225
[OLGF] human gut metagenome; faeces
55172
55245
+
Phe
GAA
[ENA]
¡û
>WENV183051210
OLGI01022383
[OLGI] human gut metagenome; faeces
427
354
-
Phe
GAA
[ENA]
¡û
>WENV183080907
OLIY01027580
[OLIY] human gut metagenome; human gut
480
407
-
Phe
GAA
[ENA]
¡û
>WENV183705290
PDWI01001343
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12913
12840
-
Phe
GAA
[ENA]
¡û
>WENV183707270
PDWI01007721
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8033
7960
-
Phe
GAA
[ENA]
¡û
>WENV183722509
PDWJ01135186
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
202
129
-
Phe
GAA
[ENA]
¡û
>WENV183747700
PPCM01019034
[PPCM] marine sediment metagenome; marine sediment
694
767
+
Phe
GAA
[ENA]
¡û
>WENV170048474
CDZA01015812
[CDZA] gut metagenome; human stools
1548
1473
-
Phe
GAA
[ENA]
¡û
>WENV170310984
CESM01091003
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
387
314
-
Phe
GAA
[ENA]
¡û
>WENV170386929
CETY01236202
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
423
350
-
Phe
GAA
[ENA]
¡û
>WENV170674758
LCWY01002069
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1467
1540
+
Phe
GAA
[ENA]
¡û
>WENV170687037
LFRM01174179
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3969
4044
+
Phe
GAA
[ENA]
¡û
>WENV170785478
MDSP01073161
[MDSP] gut metagenome; Stomach gut content
1104
1179
+
Phe
GAA
[ENA]
¡û
>WENV170969249
MTKW01023605
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2955
2882
-
Phe
GAA
[ENA]
¡û
>C181004323
AP018040
Bacteroidota
Petrimonas sp. IBARAKI [AP018040]
1051147
1051074
-
Phe
GAA
-
¡û
>C09102801
AP010656
Bacteroidota
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 CfPt1-2 [AP010656]
269258
269183
-
Phe
GAA
[Ensembl]
¡û
>W1810810981
QRXW01000001
Bacteroidota
Alistipes indistinctus AF17-14 [QRXW]
475879
475952
+
Phe
GAA
[ENA]
¡û
>W2010267088
CABKQI020000002
Bacteroidota
Alistipes indistinctus [CABKQI]
664962
664889
-
Phe
GAA
[ENA]
¡û
>W2012162796
VVNE01000001
Bacteroidota
Alistipes indistinctus BIOML-A1 [VVNE]
415011
415084
+
Phe
GAA
[ENA]
¡û
>C211007781
AP023049
Bacteroidota
Alistipes indistinctus 2BBH45 [AP023049]
2731476
2731403
-
Phe
GAA
-
¡û
>C231448589
CP102250
Bacteroidota
Alistipes indistinctus YIT 12060 [CP102250]
407033
407106
+
Phe
GAA
-
¡û
>W1511336690
JRAN01000004
Bacteroidota
Porphyromonadaceae bacterium COT-184 OH4590 [JRAN]
52715
52790
+
Phe
GAA
[ENA]
¡û
>W1511336864
JRAR01000021
Bacteroidota
Porphyromonas sp. COT-290 OH860 [JRAR]
933
860
-
Phe
GAA
[ENA]
¡û
>W11119610
ADLD01000013
Bacteroidota
Alistipes indistinctus YIT 12060 [ADLD]
664962
664887
-
Phe
GAA
[ENA]
¡û
>W1710578576
FPBR01000046
Bacteroidota
Porphyromonadaceae bacterium KHP3R9 [FPBR]
415
488
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK