This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301701 (76 seq.)
>W1710893424
LNET01000038
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
125895
125820
-
His
GTG
[ENA]
¡û
>W1710944150
LOQE01000061
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
7600
7525
-
His
GTG
[ENA]
¡û
>W1711074204
LSJH01001037
Betaproteobacteria
Xylophilus ampelinus [LSJH]
11725
11650
-
His
GTG
[ENA]
¡û
>W1711148713
LVKS01000111
Betaproteobacteria
Ralstonia solanacearum [LVKS]
149636
149561
-
His
GTG
[ENA]
¡û
>W1711148756
LVKT01000108
Betaproteobacteria
Ralstonia solanacearum [LVKT]
418337
418412
+
His
GTG
[ENA]
¡û
>W1711148847
LVKV01000072
Betaproteobacteria
Ralstonia solanacearum [LVKV]
149636
149561
-
His
GTG
[ENA]
¡û
>W1711268795
LZDH01000034
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
20716
20641
-
His
GTG
[ENA]
¡û
>W1711799809
MXAM01000026
Betaproteobacteria
Ralstonia solanacearum [MXAM]
149753
149678
-
His
GTG
[ENA]
¡û
>W1711903427
MZNA01000007
Betaproteobacteria
Ralstonia solanacearum [MZNA]
149661
149586
-
His
GTG
[ENA]
¡û
>W1711903468
MZNB01000008
Betaproteobacteria
Ralstonia solanacearum [MZNB]
149671
149596
-
His
GTG
[ENA]
¡û
>W131178427
ARLO01000069
Betaproteobacteria
Curvibacter lanceolatus ATCC 14669 [ARLO]
348645
348720
+
His
GTG
[ENA]
¡û
>w010101
AAKL01000078
Betaproteobacteria
Ralstonia solanacearum UW551 [AAKL]
9167
9090
-
His
GTG
[ENA]
¡û
>WENV180019420
FTBV01002052
[FTBV] metagenome; soil
15884
15809
-
His
GTG
[ENA]
¢þ
>WENV180386836
OBPD01005880
[OBPD] marine metagenome; Sea Water
363
288
-
His
GTG
[ENA]
¢þ
>WENV181311622
OFJB01005902
[OFJB] sludge metagenome; sludge
3693
3618
-
His
GTG
[ENA]
¢þ
>WENV181311624
OFJB01005976
[OFJB] sludge metagenome; sludge
2
77
+
His
GTG
[ENA]
¢þ
>WENV181312441
OFJB01120383
[OFJB] sludge metagenome; sludge
428
503
+
His
GTG
[ENA]
¢þ
>WENV181411380
OGCI01023390
[OGCI] hot springs metagenome; Hot spring water
2
77
+
His
GTG
[ENA]
¢þ
>WENV181411595
OGCI01033886
[OGCI] hot springs metagenome; Hot spring water
2
77
+
His
GTG
[ENA]
¢þ
>WENV181412085
OGCI01080669
[OGCI] hot springs metagenome; Hot spring water
620
695
+
His
GTG
[ENA]
¢þ
>WENV181416565
OGCL01103188
[OGCL] hot springs metagenome; Hot spring water
146
221
+
His
GTG
[ENA]
¢þ
>WENV181416660
OGCL01122289
[OGCL] hot springs metagenome; Hot spring water
109
184
+
His
GTG
[ENA]
¢þ
>W141223649
BADL01000283
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
1622
1547
-
His
GTG
[ENA]
¡û
>W141276683
JADZ01000012
Betaproteobacteria
Curvibacter gracilis ATCC BAA-807 [JADZ]
246097
246172
+
His
GTG
[ENA]
¡û
>C08005961
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
2090097
2090025
-
His
GTG
[Ensembl]
¡û
>WENV183729375
PJTQ01029989
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
118
193
+
His
GTG
[ENA]
¢þ
>WENV183739653
PJUE01051163
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
239
314
+
His
GTG
[ENA]
¢þ
>WENV183741088
PJUF01039113
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
599
524
-
His
GTG
[ENA]
¢þ
>WENV170365618
CETN01129324
[CETN] marine metagenome genome assembly TARA_122_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
419
344
-
His
GTG
[ENA]
¢þ
>WENV170709211
LNFM01000185
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
69738
69813
+
His
GTG
[ENA]
¢þ
>C181053609
CP021766
Betaproteobacteria
Ralstonia solanacearum RS 489 [CP021766]
1857461
1857536
+
His
GTG
-
¡û
>C181064559
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
2484418
2484343
-
His
GTG
-
¡û
>C181176195
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
1515017
1515092
+
His
GTG
-
¡û
>C191019271
CP021764
Betaproteobacteria
Ralstonia solanacearum CRMRs218 [CP021764]
1386351
1386426
+
His
GTG
-
¡û
>W141728336
JNGD01000017
Betaproteobacteria
Ralstonia solanacearum [JNGD]
68401
68326
-
His
GTG
[ENA]
¡û
>W141754394
JNVP02000291
Betaproteobacteria
Ralstonia solanacearum [JNVP]
41140
41065
-
His
GTG
[ENA]
¡û
>W141822470
JQSH01000002
Betaproteobacteria
Ralstonia solanacearum [JQSH]
149517
149442
-
His
GTG
[ENA]
¡û
>W1910699690
MERU01000002
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
32886
32961
+
His
GTG
[ENA]
¡û
>W1910803469
MTBB01000041
Betaproteobacteria
Ralstonia solanacearum P816 [MTBB]
138683
138608
-
His
GTG
[ENA]
¡û
>W1910870515
NCTI01000001
Betaproteobacteria
Ralstonia solanacearum UW551 [NCTI]
1649865
1649792
-
His
GTG
[ENA]
¡û
>W1911244717
NSJB01000001
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
367422
367347
-
His
GTG
[ENA]
¡û
>W1911244798
NSJC01000042
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
7046
7121
+
His
GTG
[ENA]
¡û
>W1911244811
NSJD01000003
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
41941
41866
-
His
GTG
[ENA]
¡û
>W1911244884
NSJE01000022
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
49645
49720
+
His
GTG
[ENA]
¡û
>W1911244933
NSJF01000006
Betaproteobacteria
Vandammella animalimorsus NML03-0146 [NSJF]
216649
216724
+
His
GTG
[ENA]
¡û
>W1911270475
NTBH01000006
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
7046
7121
+
His
GTG
[ENA]
¡û
>W1911270512
NTBI01000004
Betaproteobacteria
Vandammella animalimorsus NML91-0035 [NTBI]
7046
7121
+
His
GTG
[ENA]
¡û
>W1911709216
QPIB01000008
Betaproteobacteria
Xenophilus sp. E41 [QPIB]
471158
471083
-
His
GTG
[ENA]
¡û
>W1810081368
PEOG01000050
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
3669
3744
+
His
GTG
[ENA]
¡û
>W1810109648
PHHL01000020
Betaproteobacteria
Ralstonia solanacearum GEO_230 [PHHL]
42520
42595
+
His
GTG
[ENA]
¡û
>W1810109669
PHHM01000003
Betaproteobacteria
Ralstonia solanacearum GEO_6 [PHHM]
42223
42298
+
His
GTG
[ENA]
¡û
>W1810109717
PHHN01000005
Betaproteobacteria
Ralstonia solanacearum GEO_81 [PHHN]
149701
149626
-
His
GTG
[ENA]
¡û
>W1810109798
PHHO01000044
Betaproteobacteria
Ralstonia solanacearum GEO_304 [PHHO]
149671
149596
-
His
GTG
[ENA]
¡û
>W1810109823
PHHP01000041
Betaproteobacteria
Ralstonia solanacearum GEO_55 [PHHP]
42223
42298
+
His
GTG
[ENA]
¡û
>W1810273298
PSNY01000004
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
41955
42030
+
His
GTG
[ENA]
¡û
>W1810762728
QQAP01000001
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
516974
517049
+
His
GTG
[ENA]
¡û
>W1810884625
QUMT01000002
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
497435
497510
+
His
GTG
[ENA]
¡û
>W1510073295
CDLW01000001
Betaproteobacteria
Ralstonia solanacearum Grenada 9-1 [CDLW]
350059
350134
+
His
GTG
[ENA]
¡û
>W1510081124
CDRX01000001
Betaproteobacteria
Ralstonia solanacearum RS2 [CDRX]
181589
181514
-
His
GTG
[ENA]
¡û
>W1510081304
CDSB01000001
Betaproteobacteria
Ralstonia solanacearum UW181 [CDSB]
1544776
1544701
-
His
GTG
[ENA]
¡û
>W1511403230
JTKY01000043
Betaproteobacteria
Tepidimonas taiwanensis VT154-175 [JTKY]
7675
7750
+
His
GTG
[ENA]
¡û
>W1511596014
LBNQ01000022
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
117068
116993
-
His
GTG
[ENA]
¡û
>C161043517
CP012687
Betaproteobacteria
Ralstonia solanacearum UY031 [CP012687]
1857398
1857473
+
His
GTG
-
¡û
>C161060281
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
2479681
2479756
+
His
GTG
[Ensembl]
¡û
>W1610521127
JIBY01000143
Betaproteobacteria
Ralstonia solanacearum [JIBY]
39670
39595
-
His
GTG
[ENA]
¡û
>W1610604893
LFRI01000330
Betaproteobacteria
Aquabacterium parvum [LFRI]
33043
33118
+
His
GTG
[ENA]
¡û
>W1610753690
LNET01000038
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
125895
125820
-
His
GTG
[ENA]
¡û
>W1610800450
LOQE01000061
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
7600
7525
-
His
GTG
[ENA]
¡û
>W1610913509
LSJH01001037
Betaproteobacteria
Xylophilus ampelinus [LSJH]
11725
11650
-
His
GTG
[ENA]
¡û
>W1610959444
LVKS01000111
Betaproteobacteria
Ralstonia solanacearum [LVKS]
149636
149561
-
His
GTG
[ENA]
¡û
>W1610959487
LVKT01000108
Betaproteobacteria
Ralstonia solanacearum [LVKT]
418337
418412
+
His
GTG
[ENA]
¡û
>W1610959578
LVKV01000072
Betaproteobacteria
Ralstonia solanacearum [LVKV]
149636
149561
-
His
GTG
[ENA]
¡û
>W1611029607
LZDH01000034
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
20716
20641
-
His
GTG
[ENA]
¡û
>W1710575464
FOZE01000003
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
793469
793544
+
His
GTG
[ENA]
¡û
>W1710619474
JIBY01000143
Betaproteobacteria
Ralstonia solanacearum [JIBY]
39670
39595
-
His
GTG
[ENA]
¡û
>W1710726336
LFRI01000330
Betaproteobacteria
Aquabacterium parvum [LFRI]
33043
33118
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK