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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301743 (121 seq.)
>W1710778214
LJCU01000023
Actinomycetota
Actinobacteria bacterium OK006 [LJCU]
18325
18250
-
Thr
GGT
[ENA]
¡û
>W1710778296
LJCV01000069
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
18776
18701
-
Thr
GGT
[ENA]
¡û
>W131000195
AEJB01000644
Actinomycetota
Streptomyces turgidiscabies Car8 [AEJB]
6534
6609
+
Thr
GGT
[ENA]
¡û
>W1710861229
LMDL01000024
Actinomycetota
Streptomyces sp. Root369 [LMDL]
93312
93237
-
Thr
GGT
[ENA]
¡û
>W1710868309
LMIZ01000005
Actinomycetota
Streptomyces sp. Root264 [LMIZ]
263
338
+
Thr
GGT
[ENA]
¡û
>W1710884141
LMWK01000007
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
717055
716980
-
Thr
GGT
[ENA]
¡û
>W1710884321
LMWM01000028
Actinomycetota
Streptomyces pseudovenezuelae [LMWM]
852
927
+
Thr
GGT
[ENA]
¡û
>W1710884404
LMWO01000001
Actinomycetota
Streptomyces canus ciscaucasicus [LMWO]
851
926
+
Thr
GGT
[ENA]
¡û
>W1710884604
LMWQ01000039
Actinomycetota
Streptomyces antibioticus [LMWQ]
854
929
+
Thr
GGT
[ENA]
¡û
>W1710884648
LMWR01000036
Actinomycetota
Streptomyces olivochromogenes [LMWR]
862
937
+
Thr
GGT
[ENA]
¡û
>W1710884801
LMWT01000045
Actinomycetota
Streptomyces avermitilis [LMWT]
861
936
+
Thr
GGT
[ENA]
¡û
>W1710884827
LMWU01000019
Actinomycetota
Streptomyces canus [LMWU]
654201
654126
-
Thr
GGT
[ENA]
¡û
>W1710884903
LMWV01000015
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
329790
329715
-
Thr
GGT
[ENA]
¡û
>W1710885007
LMWW01000078
Actinomycetota
Streptomyces griseoruber [LMWW]
86265
86190
-
Thr
GGT
[ENA]
¡û
>W1710885221
LMXA01000007
Actinomycetota
Streptomyces sp. DSM 15324 [LMXA]
432889
432814
-
Thr
GGT
[ENA]
¡û
>W1710885329
LMXB01000110
Actinomycetota
Streptomyces dysideae RV15 [LMXB]
858
933
+
Thr
GGT
[ENA]
¡û
>W1711054264
LRTP01000920
Actinomycetota
Streptomyces diastatochromogenes [LRTP]
18275
18200
-
Thr
GGT
[ENA]
¡û
>W1711455795
MJAH01000006
Actinomycetota
Streptomyces sp. LUP47B LUP47b [MJAH]
534078
534153
+
Thr
GGT
[ENA]
¡û
>W1711455907
MJAJ01000003
Actinomycetota
Streptomyces sp. LUP30 [MJAJ]
4109
4184
+
Thr
GGT
[ENA]
¡û
>W1711492052
MKKB01000439
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
35541
35614
+
Thr
GGT
[ENA]
¡û
>W1711625227
MPHV01003104
Actinomycetota
Streptomyces sp. WAC00263 [MPHV]
909
984
+
Thr
GGT
[ENA]
¡û
>W1711628558
MPOH02000009
Actinomycetota
Streptomyces phaeoluteigriseus [MPOH]
361499
361424
-
Thr
GGT
[ENA]
¡û
>W1711721760
MTJO01000001
Actinomycetota
Streptomyces avermitilis [MTJO]
2836322
2836397
+
Thr
GGT
[ENA]
¡û
>W1711750952
MUNH01000384
Actinomycetota
Streptomyces recifensis [MUNH]
4144
4071
-
Thr
GGT
[ENA]
¡û
>W1711751000
MUNI01000321
Actinomycetota
Streptomyces reticuliscabiei [MUNI]
3274
3199
-
Thr
GGT
[ENA]
¡û
>W1711784667
MWFK01000001
Actinomycetota
Streptomyces sp. M41(2017) [MWFK]
3961527
3961602
+
Thr
GGT
[ENA]
¡û
>W1711790744
MWIF01000220
Actinomycetota
Streptomyces sp. NRRL B-24085 [MWIF]
17428
17353
-
Thr
GGT
[ENA]
¡û
>W1711792357
MWJO01000173
Actinomycetota
Streptomyces sp. GKU 895 [MWJO]
5324
5249
-
Thr
GGT
[ENA]
¡û
>W131185341
ARTQ01000107
Actinomycetota
Streptomyces canus 299MFChir4.1 [ARTQ]
1188
1263
+
Thr
GGT
[ENA]
¡û
>W131185454
ARTS01000033
Actinomycetota
Streptomyces sp. 351MFTsu5.1 [ARTS]
972
1047
+
Thr
GGT
[ENA]
¡û
>C171049521
CP016438
Actinomycetota
Streptomyces lincolnensis NRRL 2936 [CP016438]
7348040
7348115
+
Thr
GGT
-
¡û
>C020606
BA000030
Actinomycetota
Streptomyces avermitilis MA-4680 = NBRC 14893 [BA000030]
3072707
3072632
-
Thr
GGT
[Ensembl]
¡û
>WENV180291197
OBIV01018923
[OBIV] soil metagenome; Clay
355
428
+
Thr
GGT
[ENA]
¢þ
>WENV180343611
OBLK01046692
[OBLK] soil metagenome; Clay
481
408
-
Thr
GGT
[ENA]
¢þ
>WENV181297938
OFHL01006935
[OFHL] soil metagenome; Clay
1116
1189
+
Thr
GGT
[ENA]
¢þ
>W08006778
ABJJ01000235
Actinomycetota
Streptomyces sviceus ATCC 29083 [ABJJ]
1363
1438
+
Thr
GGT
[ENA]
¡û
>WENV183749974
PPFU01241009
[PPFU] hypolithon metagenome; Antarctic Hypolithon
502
575
+
Thr
GGT
[ENA]
¢þ
>W141463774
JFJQ01000198
Actinomycetota
Streptomyces sp. Tu 6176 [JFJQ]
995
1070
+
Thr
GGT
[ENA]
¡û
>C181072078
CP022744
Actinomycetota
Streptomyces lincolnensis LC-G [CP022744]
2768637
2768562
-
Thr
GGT
-
¡û
>W09109331
ABUD01000026
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
6925
6998
+
Thr
GGT
[ENA]
¡û
>C181164831
CP028369
Actinomycetota
Streptomyces sp. P3 [CP028369]
192203
192128
-
Thr
GGT
-
¡û
>C191046353
CP026652
Actinomycetota
Streptomyces dengpaensis XZHG99 [CP026652]
2358275
2358201
-
Thr
GGT
-
¡û
>C191083805
CP031969
Actinomycetota
Streptomyces sp. CC0208 [CP031969]
2427062
2426987
-
Thr
GGT
-
¡û
>C191086710
CP032229
Actinomycetota
Streptomyces seoulensis KCTC 9819 [CP032229]
4650423
4650496
+
Thr
GGT
-
¡û
>C191089653
CP032427
Actinomycetota
Streptomyces griseorubiginosus 3E-1 [CP032427]
2675814
2675739
-
Thr
GGT
-
¡û
>C191125901
CP034463
Actinomycetota
Streptomyces aquilus GGCR-6 [CP034463]
7536796
7536871
+
Thr
GGT
-
¡û
>C191187379
CP041168
Actinomycetota
Streptomyces griseorubiginosus BTU6 [CP041168]
6716884
6716959
+
Thr
GGT
-
¡û
>W141757092
JNXP01000022
Actinomycetota
Streptomyces seoulensis [JNXP]
965
1038
+
Thr
GGT
[ENA]
¡û
>W141759178
JNZD01000007
Actinomycetota
Streptomyces aureus [JNZD]
364572
364499
-
Thr
GGT
[ENA]
¡û
>W141763320
JOBZ01000160
Actinomycetota
Streptomyces sp. NRRL WC-3774 [JOBZ]
5183
5108
-
Thr
GGT
[ENA]
¡û
>W141770640
JOGP01000037
Actinomycetota
Streptomyces sp. NRRL B-3229 [JOGP]
42802
42727
-
Thr
GGT
[ENA]
¡û
>W141772568
JOHW01000052
Actinomycetota
Streptomyces sp. NRRL F-5008 [JOHW]
946
1021
+
Thr
GGT
[ENA]
¡û
>W141773057
JOIF01000001
Actinomycetota
Streptomyces sp. NRRL F-2799 [JOIF]
370158
370085
-
Thr
GGT
[ENA]
¡û
>W141816397
JQJV01000031
Actinomycetota
Streptomyces mirabilis [JQJV]
102438
102513
+
Thr
GGT
[ENA]
¡û
>W141817984
JQLE01000030
Actinomycetota
Streptomyces mirabilis [JQLE]
1207
1282
+
Thr
GGT
[ENA]
¡û
>W1910018016
BDQI01000011
Actinomycetota
Streptomyces olivochromogenes NBRC 3561 [BDQI]
988
1063
+
Thr
GGT
[ENA]
¡û
>W1910179402
BJHX01000001
Actinomycetota
Streptomyces avermitilis NBRC 14893 [BJHX]
1866839
1866764
-
Thr
GGT
[ENA]
¡û
>W1910179436
BJHY01000001
Actinomycetota
Streptomyces avermitilis ATCC 31267 [BJHY]
7202429
7202504
+
Thr
GGT
[ENA]
¡û
>W1910179503
BJHZ01000001
Actinomycetota
Streptomyces avermitilis cw2 [BJHZ]
6111032
6111107
+
Thr
GGT
[ENA]
¡û
>W1910184522
BJOR01000001
Actinomycetota
Streptomyces sp. 6-11-2 [BJOR]
1755510
1755435
-
Thr
GGT
[ENA]
¡û
>C141004682
CP006259
Actinomycetota
Streptomyces collinus Tu 365 [CP006259]
6203638
6203711
+
Thr
GGT
[Ensembl]
¡û
>W1910812614
MVDM01000017
Actinomycetota
Streptomyces sp. HG99 [MVDM]
169078
169004
-
Thr
GGT
[ENA]
¡û
>W1911244004
NSGZ01000001
Actinomycetota
Streptomyces sp. Ag82_O1-15 [NSGZ]
3937249
3937174
-
Thr
GGT
[ENA]
¡û
>W1911491802
OAOJ01000001
Actinomycetota
Streptomyces sp. TLI_55 [OAOJ]
6760747
6760822
+
Thr
GGT
[ENA]
¡û
>W1911497596
OCQN01000001
Actinomycetota
Streptomyces sp. OK228 [OCQN]
8468763
8468838
+
Thr
GGT
[ENA]
¡û
>W1911498090
OCSW01000001
Actinomycetota
Streptomyces sp. OV198 [OCSW]
2456537
2456462
-
Thr
GGT
[ENA]
¡û
>W1911765634
QXCZ01000001
Actinomycetota
Streptomyces sp. 3212.5 [QXCZ]
2643002
2642927
-
Thr
GGT
[ENA]
¡û
>W1810000198
BEWA01000037
Actinomycetota
Streptomyces rishiriensis NBRC 13407 [BEWA]
54504
54431
-
Thr
GGT
[ENA]
¡û
>W1810072553
PEFK01000001
Actinomycetota
Streptomyces sp. 1121.2 [PEFK]
2720531
2720457
-
Thr
GGT
[ENA]
¡û
>W1810072740
PEFM01000001
Actinomycetota
Streptomyces sp. 94 [PEFM]
3717656
3717581
-
Thr
GGT
[ENA]
¡û
>W1810072882
PEFO01000001
Actinomycetota
Streptomyces sp. 93 [PEFO]
8273143
8273218
+
Thr
GGT
[ENA]
¡û
>W1810172062
PJME01000034
Actinomycetota
Streptomyces geranii A301 [PJME]
1313
1388
+
Thr
GGT
[ENA]
¡û
>W1810173644
PJNF01000001
Actinomycetota
Streptomyces sp. OK885 [PJNF]
2554003
2554078
+
Thr
GGT
[ENA]
¡û
>W1810174432
PJOS01000133
Actinomycetota
Streptomyces populi A249 [PJOS]
972
1045
+
Thr
GGT
[ENA]
¡û
>W1810233365
PPDK01000001
Actinomycetota
Euzebya tangerina F10 [PPDK]
539
466
-
Thr
GGT
[ENA]
¡û
>W1810577489
QEOG01000001
Actinomycetota
Streptomyces sp. 3212.2 [QEOG]
3717091
3717016
-
Thr
GGT
[ENA]
¡û
>W1810588451
QFRX01000001
Actinomycetota
Streptomyces sp. Act143 [QFRX]
3067891
3067816
-
Thr
GGT
[ENA]
¡û
>W1810694168
QLLW01000001
Actinomycetota
Streptomyces sp. PsTaAH-130 [QLLW]
1194
1267
+
Thr
GGT
[ENA]
¡û
>W1810763576
QQBH01000009
Actinomycetota
Streptomyces parvulus 2297 [QQBH]
229057
228982
-
Thr
GGT
[ENA]
¡û
>W1810787947
QREB01000001
Actinomycetota
Streptomyces sp. 67 [QREB]
2637920
2637845
-
Thr
GGT
[ENA]
¡û
>W1510003299
BAVY01000029
Actinomycetota
Streptomyces avermitilis MA-4680 = NBRC 14893 [BAVY]
1045
1120
+
Thr
GGT
[ENA]
¡û
>C10108067
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
2188945
2188872
-
Thr
GGT
[Ensembl]
¡û
>W1511511559
JXTE01000005
Actinomycetota
Streptomyces sp. WM6386 [JXTE]
968
1043
+
Thr
GGT
[ENA]
¡û
>W1511544231
JZJK01000086
Actinomycetota
Streptomyces avermitilis MA-4680 = NBRC 14893 [JZJK]
1318172
1318097
-
Thr
GGT
[ENA]
¡û
>W1511584096
LAVA01000111
Actinomycetota
Streptomyces mangrovisoli MUSC149T [LAVA]
1055
1130
+
Thr
GGT
[ENA]
¡û
>W1511697293
LGDV01000237
Actinomycetota
Streptomyces sp. MMG1121 [LGDV]
960
1035
+
Thr
GGT
[ENA]
¡û
>W1511697308
LGDW01000021
Actinomycetota
Streptomyces sp. NRRL WC-3618 [LGDW]
24338
24263
-
Thr
GGT
[ENA]
¡û
>C161060656
CP013743
Actinomycetota
Streptomyces sp. CdTB01 [CP013743]
3045639
3045564
-
Thr
GGT
[Ensembl]
¡û
>C161091841
CP015866
Actinomycetota
Streptomyces parvulus 2297 [CP015866]
5357658
5357733
+
Thr
GGT
[Ensembl]
¡û
>C161095559
CP016279
Actinomycetota
Streptomyces griseochromogenes ATCC 14511 [CP016279]
2143949
2144024
+
Thr
GGT
[Ensembl]
¡û
>W1610052164
BBHQ01001818
Actinomycetota
Streptomyces antibioticus JCM 4620 [BBHQ]
315
390
+
Thr
GGT
[ENA]
¡û
>W1610061340
BCMN01000015
Actinomycetota
Streptomyces turgidiscabies [BCMN]
1173
1248
+
Thr
GGT
[ENA]
¡û
>W1610633304
LIQQ01000026
Actinomycetota
Streptomyces graminilatus [LIQQ]
1043
1118
+
Thr
GGT
[ENA]
¡û
>W1610633434
LIQS01000177
Actinomycetota
Streptomyces griseoruber [LIQS]
18449
18374
-
Thr
GGT
[ENA]
¡û
>W1610633852
LIQZ01000191
Actinomycetota
Streptomyces phaeochromogenes [LIQZ]
17290
17217
-
Thr
GGT
[ENA]
¡û
>W1610642433
LJCU01000023
Actinomycetota
Actinobacteria bacterium OK006 [LJCU]
18325
18250
-
Thr
GGT
[ENA]
¡û
>W1610642515
LJCV01000069
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
18776
18701
-
Thr
GGT
[ENA]
¡û
>W1610723575
LMDL01000024
Actinomycetota
Streptomyces sp. Root369 [LMDL]
93312
93237
-
Thr
GGT
[ENA]
¡û
>W1610730655
LMIZ01000005
Actinomycetota
Streptomyces sp. Root264 [LMIZ]
263
338
+
Thr
GGT
[ENA]
¡û
>W1610746067
LMWK01000007
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
717055
716980
-
Thr
GGT
[ENA]
¡û
>W1610746247
LMWM01000028
Actinomycetota
Streptomyces pseudovenezuelae [LMWM]
852
927
+
Thr
GGT
[ENA]
¡û
>W1610746330
LMWO01000001
Actinomycetota
Streptomyces canus ciscaucasicus [LMWO]
851
926
+
Thr
GGT
[ENA]
¡û
>W1610746530
LMWQ01000039
Actinomycetota
Streptomyces antibioticus [LMWQ]
854
929
+
Thr
GGT
[ENA]
¡û
>W1610746574
LMWR01000036
Actinomycetota
Streptomyces olivochromogenes [LMWR]
862
937
+
Thr
GGT
[ENA]
¡û
>W1610746727
LMWT01000045
Actinomycetota
Streptomyces avermitilis [LMWT]
861
936
+
Thr
GGT
[ENA]
¡û
>W1610746753
LMWU01000019
Actinomycetota
Streptomyces canus [LMWU]
654201
654126
-
Thr
GGT
[ENA]
¡û
>W1610746829
LMWV01000015
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
329790
329715
-
Thr
GGT
[ENA]
¡û
>W1610746933
LMWW01000078
Actinomycetota
Streptomyces griseoruber [LMWW]
86265
86190
-
Thr
GGT
[ENA]
¡û
>W1610747147
LMXA01000007
Actinomycetota
Streptomyces sp. DSM 15324 [LMXA]
432889
432814
-
Thr
GGT
[ENA]
¡û
>W1610747255
LMXB01000110
Actinomycetota
Streptomyces dysideae RV15 [LMXB]
858
933
+
Thr
GGT
[ENA]
¡û
>W1610895452
LRTP01000920
Actinomycetota
Streptomyces diastatochromogenes [LRTP]
18275
18200
-
Thr
GGT
[ENA]
¡û
>W1710048542
BBHQ01001818
Actinomycetota
Streptomyces antibioticus JCM 4620 [BBHQ]
315
390
+
Thr
GGT
[ENA]
¡û
>W1710058010
BCFL01000024
Actinomycetota
Streptomyces hyaluromycini [BCFL]
428899
428824
-
Thr
GGT
[ENA]
¡û
>W1710059005
BCMN01000015
Actinomycetota
Streptomyces turgidiscabies [BCMN]
1173
1248
+
Thr
GGT
[ENA]
¡û
>W1710550379
FOFF01000078
Actinomycetota
Streptomyces sp. yr375 [FOFF]
1184
1259
+
Thr
GGT
[ENA]
¡û
>W1710560813
FONR01000013
Actinomycetota
Streptomyces mirabilis [FONR]
332978
332903
-
Thr
GGT
[ENA]
¡û
>W1710607211
FWZW01000015
Actinomycetota
Streptomyces sp. Amel2xC10 [FWZW]
1190
1265
+
Thr
GGT
[ENA]
¡û
>W1710749572
LHQL01000014
Actinomycetota
Streptomyces antibioticus [LHQL]
4241
4316
+
Thr
GGT
[ENA]
¡û
>W1710767736
LIQQ01000026
Actinomycetota
Streptomyces graminilatus [LIQQ]
1043
1118
+
Thr
GGT
[ENA]
¡û
>W1710767866
LIQS01000177
Actinomycetota
Streptomyces griseoruber [LIQS]
18449
18374
-
Thr
GGT
[ENA]
¡û
>W1710768284
LIQZ01000191
Actinomycetota
Streptomyces phaeochromogenes [LIQZ]
17290
17217
-
Thr
GGT
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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