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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301818 (32 seq.)
>C025650
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1392381
1392457
+
Cys
GCA
-
¡û
>C025790
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1399888
1399812
-
Cys
GCA
[Ensembl]
¡û
>W141082652
AUNF01000018
Thermotogota
Thermotoga sp. A7A [AUNF]
35218
35142
-
Cys
GCA
[ENA]
¡û
>WENV181408992
OGCH01031219
[OGCH] hot springs metagenome; hot springs
272
348
+
Cys
GCA
[ENA]
¢þ
>C08010903
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1464329
1464256
-
Cys
GCA
[Ensembl]
¡û
>WENV170676184
LDZR01001434
[LDZR] terrestrial metagenome; oil reservoir sample K2
2881
2957
+
Cys
GCA
[ENA]
¢þ
>WENV170676768
LDZS01002193
[LDZS] terrestrial metagenome; oil reservoir sample K3
2881
2957
+
Cys
GCA
[ENA]
¢þ
>W09106549
AAWB01000003
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
22573
22497
-
Cys
GCA
[ENA]
¡û
>W09107426
ABIJ01000006
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
97183
97107
-
Cys
GCA
[ENA]
¡û
>W09112211
ABXR01000008
Thermotogota
Marinitoga piezophila KA3 [ABXR]
29827
29903
+
Cys
GCA
[ENA]
¡û
>C141011531
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1422869
1422793
-
Cys
GCA
-
¡û
>C151004280
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1440769
1440693
-
Cys
GCA
[Ensembl]
¡û
>C151004322
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1391781
1391705
-
Cys
GCA
[Ensembl]
¡û
>C151074610
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1382369
1382445
+
Cys
GCA
[Ensembl]
¡û
>C151076964
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1392397
1392473
+
Cys
GCA
[Ensembl]
¡û
>C151077010
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1392397
1392473
+
Cys
GCA
[Ensembl]
¡û
>W10105826
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
220005
220081
+
Cys
GCA
[ENA]
¡û
>C10113502
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1424140
1424064
-
Cys
GCA
[Ensembl]
¡û
>W11108146
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
220005
220081
+
Cys
GCA
[ENA]
¡û
>W11180794
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
39896
39972
+
Cys
GCA
[ENA]
¡û
>W121062202
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
321415
321339
-
Cys
GCA
[ENA]
¡û
>C131012500
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1392399
1392475
+
Cys
GCA
-
¡û
>W1610540331
JSFG01000009
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
27985
27909
-
Cys
GCA
[ENA]
¡û
>W1610540427
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
27473
27397
-
Cys
GCA
[ENA]
¡û
>W1610540489
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
254517
254593
+
Cys
GCA
[ENA]
¡û
>W1610612930
LGFG01000186
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
2881
2957
+
Cys
GCA
[ENA]
¡û
>W1610613158
LGFM01000062
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2881
2957
+
Cys
GCA
[ENA]
¡û
>W1710643352
JSFG01000009
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
27985
27909
-
Cys
GCA
[ENA]
¡û
>W1710643448
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
27473
27397
-
Cys
GCA
[ENA]
¡û
>W1710643510
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
254517
254593
+
Cys
GCA
[ENA]
¡û
>W1710734212
LGFG01000186
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
2881
2957
+
Cys
GCA
[ENA]
¡û
>W1710734365
LGFM01000062
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2881
2957
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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