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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301820 (32 seq.)
>C025648
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1268745
1268821
+
Pro
CGG
-
¡û
>C025788
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1517095
1517019
-
Pro
CGG
[Ensembl]
¡û
>W141070788
ASGQ01000018
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
27848
27772
-
Pro
CGG
[ENA]
¡û
>W141082655
AUNF01000020
Thermotogota
Thermotoga sp. A7A [AUNF]
49095
49019
-
Pro
CGG
[ENA]
¡û
>WENV181408764
OGCH01012595
[OGCH] hot springs metagenome; hot springs
1396
1472
+
Pro
CGG
[ENA]
¢þ
>C08010901
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1588599
1588526
-
Pro
CGG
[Ensembl]
¡û
>WENV170676173
LDZR01001296
[LDZR] terrestrial metagenome; oil reservoir sample K2
465
541
+
Pro
CGG
[ENA]
¢þ
>W09106572
AAWB01000025
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
721
797
+
Pro
CGG
[ENA]
¡û
>W09107402
ABIJ01000001
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
73525
73449
-
Pro
CGG
[ENA]
¡û
>W09112209
ABXR01000006
Thermotogota
Marinitoga piezophila KA3 [ABXR]
156162
156238
+
Pro
CGG
[ENA]
¡û
>C141011529
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1546506
1546430
-
Pro
CGG
-
¡û
>W1910635458
LNDD01000004
Thermotogota
Thermotoga sp. SG1 [LNDD]
294902
294978
+
Pro
CGG
[ENA]
¡û
>W1910635479
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
267882
267958
+
Pro
CGG
[ENA]
¡û
>C09110651
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
1292702
1292626
-
Pro
CGG
[Ensembl]
¡û
>C151004320
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1492601
1492525
-
Pro
CGG
[Ensembl]
¡û
>C151030635
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1556079
1556003
-
Pro
CGG
[Ensembl]
¡û
>C151074608
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1268760
1268836
+
Pro
CGG
[Ensembl]
¡û
>C151076962
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1268760
1268836
+
Pro
CGG
[Ensembl]
¡û
>C151077008
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1268760
1268836
+
Pro
CGG
[Ensembl]
¡û
>W10105824
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
102842
102918
+
Pro
CGG
[ENA]
¡û
>C10113500
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1541303
1541227
-
Pro
CGG
[Ensembl]
¡û
>W11108144
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
102842
102918
+
Pro
CGG
[ENA]
¡û
>W11180792
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
64761
64685
-
Pro
CGG
[ENA]
¡û
>C131012498
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1268761
1268837
+
Pro
CGG
-
¡û
>W1610540335
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
84811
84735
-
Pro
CGG
[ENA]
¡û
>W1610540425
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
128298
128222
-
Pro
CGG
[ENA]
¡û
>W1610540487
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
153692
153768
+
Pro
CGG
[ENA]
¡û
>W1610612919
LGFG01000048
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
465
541
+
Pro
CGG
[ENA]
¡û
>W1710643356
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
84811
84735
-
Pro
CGG
[ENA]
¡û
>W1710643446
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
128298
128222
-
Pro
CGG
[ENA]
¡û
>W1710643508
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
153692
153768
+
Pro
CGG
[ENA]
¡û
>W1710734201
LGFG01000048
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
465
541
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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