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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301822 (35 seq.)
>C025675
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
206225
206149
-
Arg
TCG
-
¡û
>C025778
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
737303
737379
+
Arg
TCG
[Ensembl]
¡û
>W141082670
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
16828
16752
-
Arg
TCG
[ENA]
¡û
>WENV181407967
OGCH01000294
[OGCH] hot springs metagenome; hot springs
10458
10382
-
Arg
TCG
[ENA]
¢þ
>C08010889
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
772989
773065
+
Arg
TCG
[Ensembl]
¡û
>WENV170676177
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
4821
4897
+
Arg
TCG
[ENA]
¢þ
>WENV170676772
LDZS01002199
[LDZS] terrestrial metagenome; oil reservoir sample K3
2941
3017
+
Arg
TCG
[ENA]
¢þ
>W09106563
AAWB01000011
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
55923
55847
-
Arg
TCG
[ENA]
¡û
>W09107409
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
35041
35117
+
Arg
TCG
[ENA]
¡û
>W09112240
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
35465
35541
+
Arg
TCG
[ENA]
¡û
>C141011520
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
739394
739470
+
Arg
TCG
-
¡û
>W1910635435
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
253023
253099
+
Arg
TCG
[ENA]
¡û
>C151004265
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
777756
777832
+
Arg
TCG
[Ensembl]
¡û
>C151004311
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
722413
722489
+
Arg
TCG
[Ensembl]
¡û
>C151074635
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
206228
206152
-
Arg
TCG
[Ensembl]
¡û
>C151076989
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
206228
206152
-
Arg
TCG
[Ensembl]
¡û
>C151077035
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
206228
206152
-
Arg
TCG
[Ensembl]
¡û
>W10105822
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203342
203266
-
Arg
TCG
[ENA]
¡û
>C10113515
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
857519
857443
-
Arg
TCG
[Ensembl]
¡û
>W11108142
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203342
203266
-
Arg
TCG
[ENA]
¡û
>W11180822
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
203045
202969
-
Arg
TCG
[ENA]
¡û
>W121062179
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
205558
205634
+
Arg
TCG
[ENA]
¡û
>C131012525
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
206228
206152
-
Arg
TCG
-
¡û
>W1610540355
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166742
166818
+
Arg
TCG
[ENA]
¡û
>W1610540368
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93680
93756
+
Arg
TCG
[ENA]
¡û
>W1610540447
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
155015
155091
+
Arg
TCG
[ENA]
¡û
>W1610540470
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
88891
88815
-
Arg
TCG
[ENA]
¡û
>W1610612923
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4821
4897
+
Arg
TCG
[ENA]
¡û
>W1610613162
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2941
3017
+
Arg
TCG
[ENA]
¡û
>W1710643376
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166742
166818
+
Arg
TCG
[ENA]
¡û
>W1710643389
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93680
93756
+
Arg
TCG
[ENA]
¡û
>W1710643468
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
155015
155091
+
Arg
TCG
[ENA]
¡û
>W1710643491
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
88891
88815
-
Arg
TCG
[ENA]
¡û
>W1710734205
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4821
4897
+
Arg
TCG
[ENA]
¡û
>W1710734369
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2941
3017
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK