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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301825 (37 seq.)
>C025635
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
208136
208212
+
Arg
GCG
-
¡û
>C025804
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
735393
735317
-
Arg
GCG
[Ensembl]
¡û
>W141070767
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
215710
215634
-
Arg
GCG
[ENA]
¡û
>W141082666
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
18740
18816
+
Arg
GCG
[ENA]
¡û
>WENV181407963
OGCH01000294
[OGCH] hot springs metagenome; hot springs
12370
12446
+
Arg
GCG
[ENA]
¢þ
>C08010915
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
771077
771004
-
Arg
GCG
[Ensembl]
¡û
>WENV170676180
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
2909
2833
-
Arg
GCG
[ENA]
¢þ
>WENV170676774
LDZS01002199
[LDZS] terrestrial metagenome; oil reservoir sample K3
1028
952
-
Arg
GCG
[ENA]
¢þ
>W09106560
AAWB01000011
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
57833
57909
+
Arg
GCG
[ENA]
¡û
>W09107415
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
33130
33054
-
Arg
GCG
[ENA]
¡û
>W09112246
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
33555
33479
-
Arg
GCG
[ENA]
¡û
>C141011546
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
737483
737407
-
Arg
GCG
-
¡û
>W1910635441
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
251133
251057
-
Arg
GCG
[ENA]
¡û
>C151004291
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
775845
775769
-
Arg
GCG
[Ensembl]
¡û
>C151004337
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
720501
720425
-
Arg
GCG
[Ensembl]
¡û
>C151030651
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
764892
764816
-
Arg
GCG
[Ensembl]
¡û
>C151074595
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
208139
208215
+
Arg
GCG
[Ensembl]
¡û
>C151076949
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
208139
208215
+
Arg
GCG
[Ensembl]
¡û
>C151076995
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
208139
208215
+
Arg
GCG
[Ensembl]
¡û
>W10105818
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
205252
205328
+
Arg
GCG
[ENA]
¡û
>C10113490
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
859429
859505
+
Arg
GCG
[Ensembl]
¡û
>W11108138
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
205252
205328
+
Arg
GCG
[ENA]
¡û
>W11180816
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
204956
205032
+
Arg
GCG
[ENA]
¡û
>W121062185
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
203647
203571
-
Arg
GCG
[ENA]
¡û
>C131012485
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
208139
208215
+
Arg
GCG
-
¡û
>W1610540361
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
164830
164754
-
Arg
GCG
[ENA]
¡û
>W1610540374
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
91770
91694
-
Arg
GCG
[ENA]
¡û
>W1610540453
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
153103
153027
-
Arg
GCG
[ENA]
¡û
>W1610540465
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
90803
90879
+
Arg
GCG
[ENA]
¡û
>W1610612926
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
2909
2833
-
Arg
GCG
[ENA]
¡û
>W1610613164
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1028
952
-
Arg
GCG
[ENA]
¡û
>W1710643382
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
164830
164754
-
Arg
GCG
[ENA]
¡û
>W1710643395
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
91770
91694
-
Arg
GCG
[ENA]
¡û
>W1710643474
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
153103
153027
-
Arg
GCG
[ENA]
¡û
>W1710643486
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
90803
90879
+
Arg
GCG
[ENA]
¡û
>W1710734208
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
2909
2833
-
Arg
GCG
[ENA]
¡û
>W1710734371
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1028
952
-
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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