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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301839 (124 seq.)
>W1711171797
LWBL02000065
Bacillota
Bacillus marinisedimentorum NC2-31 [LWBL]
49950
49877
-
His
GTG
[ENA]
¡û
>W131230438
AUHP01000011
Bacillota
Ligilactobacillus ceti DSM 22408 [AUHP]
328403
328329
-
His
GTG
[ENA]
¡û
>W1711345201
MCNR01000004
Bacillota
Ligilactobacillus animalis [MCNR]
66301
66228
-
His
GTG
[ENA]
¡û
>W1711345224
MCNR01000005
Bacillota
Ligilactobacillus animalis [MCNR]
2452
2525
+
His
GTG
[ENA]
¡û
>W1711632506
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
76573
76500
-
His
GTG
[ENA]
¡û
>W1711632529
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
3682
3609
-
His
GTG
[ENA]
¡û
>W131144876
AQFS01000073
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
2238
2311
+
His
GTG
[ENA]
¡û
>W131144836
AQFS01000015
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
3439
3366
-
His
GTG
[ENA]
¡û
>W131027740
AJAP01000007
Bacillota
Enterococcus asini ATCC 700915 [AJAP]
3416
3489
+
His
GTG
[ENA]
¡û
>W131200988
ASVU01000002
Bacillota
Enterococcus asini ATCC 700915 [ASVU]
1380
1453
+
His
GTG
[ENA]
¡û
>WENV181235986
OFEY01011265
[OFEY] mouse gut metagenome; faeces
948
1021
+
His
GTG
[ENA]
¢þ
>WENV181236526
OFEZ01001740
[OFEZ] mouse gut metagenome; faeces
279
206
-
His
GTG
[ENA]
¢þ
>WENV181239989
OFFD01040557
[OFFD] mouse gut metagenome; faeces
329
256
-
His
GTG
[ENA]
¢þ
>WENV181240430
OFFE01001339
[OFFE] mouse gut metagenome; faeces
17473
17400
-
His
GTG
[ENA]
¢þ
>WENV181242714
OFFG01001851
[OFFG] mouse gut metagenome; faeces
146
219
+
His
GTG
[ENA]
¢þ
>WENV181244010
OFFH01006617
[OFFH] mouse gut metagenome; faeces
3612
3539
-
His
GTG
[ENA]
¢þ
>WENV181244610
OFFI01000319
[OFFI] mouse gut metagenome; faeces
1668
1741
+
His
GTG
[ENA]
¢þ
>WENV181245258
OFFI01048866
[OFFI] mouse gut metagenome; faeces
487
560
+
His
GTG
[ENA]
¢þ
>WENV181245545
OFFJ01000372
[OFFJ] mouse gut metagenome; faeces
36248
36175
-
His
GTG
[ENA]
¢þ
>WENV181245960
OFFJ01005080
[OFFJ] mouse gut metagenome; faeces
6582
6509
-
His
GTG
[ENA]
¢þ
>WENV181247159
OFFK01006856
[OFFK] mouse gut metagenome; faeces
1716
1789
+
His
GTG
[ENA]
¢þ
>WENV181251419
OFFO01007362
[OFFO] mouse gut metagenome; faeces
2153
2080
-
His
GTG
[ENA]
¢þ
>WENV181251816
OFFP01000372
[OFFP] mouse gut metagenome; faeces
35617
35544
-
His
GTG
[ENA]
¢þ
>WENV181254390
OFFR01005839
[OFFR] mouse gut metagenome; faeces
146
219
+
His
GTG
[ENA]
¢þ
>WENV181255473
OFFS01004161
[OFFS] mouse gut metagenome; faeces
652
725
+
His
GTG
[ENA]
¢þ
>WENV181257369
OFFU01000747
[OFFU] mouse gut metagenome; faeces
29123
29050
-
His
GTG
[ENA]
¢þ
>WENV181260220
OFFW01031259
[OFFW] mouse gut metagenome; faeces
707
634
-
His
GTG
[ENA]
¢þ
>WENV181261192
OFFX01008947
[OFFX] mouse gut metagenome; faeces
346
419
+
His
GTG
[ENA]
¢þ
>WENV181262147
OFFY01001624
[OFFY] mouse gut metagenome; faeces
17473
17400
-
His
GTG
[ENA]
¢þ
>WENV181264324
OFGA01000574
[OFGA] mouse gut metagenome; faeces
29123
29050
-
His
GTG
[ENA]
¢þ
>WENV181268021
OFGD01000359
[OFGD] mouse gut metagenome; faeces
1924
1997
+
His
GTG
[ENA]
¢þ
>WENV181269228
OFGE01000668
[OFGE] mouse gut metagenome; faeces
34641
34568
-
His
GTG
[ENA]
¢þ
>WENV181271837
OFGG01000437
[OFGG] mouse gut metagenome; faeces
410
483
+
His
GTG
[ENA]
¢þ
>WENV181273350
OFGH01001231
[OFGH] mouse gut metagenome; faeces
410
483
+
His
GTG
[ENA]
¢þ
>WENV181275610
OFGJ01008001
[OFGJ] mouse gut metagenome; faeces
1790
1717
-
His
GTG
[ENA]
¢þ
>WENV181278250
OFGM01000490
[OFGM] mouse gut metagenome; faeces
36026
35953
-
His
GTG
[ENA]
¢þ
>WENV181279630
OFGN01001693
[OFGN] mouse gut metagenome; faeces
3810
3737
-
His
GTG
[ENA]
¢þ
>WENV181280730
OFGO01001416
[OFGO] mouse gut metagenome; faeces
17470
17397
-
His
GTG
[ENA]
¢þ
>WENV181282695
OFGP01061346
[OFGP] mouse gut metagenome; faeces
233
306
+
His
GTG
[ENA]
¢þ
>WENV181284847
OFGR01009667
[OFGR] mouse gut metagenome; faeces
146
219
+
His
GTG
[ENA]
¢þ
>WENV181287020
OFGX01000361
[OFGX] mouse gut metagenome; faeces
36446
36373
-
His
GTG
[ENA]
¢þ
>WENV181289592
OFHA01000464
[OFHA] mouse gut metagenome; faeces
35052
34979
-
His
GTG
[ENA]
¢þ
>WENV181300232
OFHN01000471
[OFHN] mouse gut metagenome; faeces
36026
35953
-
His
GTG
[ENA]
¢þ
>WENV181301672
OFHO01000585
[OFHO] mouse gut metagenome; faeces
32908
32835
-
His
GTG
[ENA]
¢þ
>WENV181303137
OFHP01001498
[OFHP] mouse gut metagenome; faeces
10099
10026
-
His
GTG
[ENA]
¢þ
>WENV181356506
OFMU01000098
[OFMU] human gut metagenome; human gut
65714
65641
-
His
GTG
[ENA]
¢þ
>W141227584
BALC01000009
Bacillota
Liquorilactobacillus sucicola JCM 15457 [BALC]
74650
74577
-
His
GTG
[ENA]
¡û
>W141229202
BAMM01000028
Bacillota
Ligilactobacillus apodemi JCM 16172 [BAMM]
290
363
+
His
GTG
[ENA]
¡û
>W141229222
BAMM01000042
Bacillota
Ligilactobacillus apodemi JCM 16172 [BAMM]
1361
1434
+
His
GTG
[ENA]
¡û
>WENV183283205
OLSD01000202
[OLSD] human gut metagenome; faeces
1206
1279
+
His
GTG
[ENA]
¢þ
>WENV183657844
OQWI01051022
[OQWI] human gut metagenome; human gut
528
455
-
His
GTG
[ENA]
¢þ
>WENV183723011
PDYJ01000024
[PDYJ] gut metagenome; fecal pellets
22882
22955
+
His
GTG
[ENA]
¢þ
>WENV183723495
PDYJ01001869
[PDYJ] gut metagenome; fecal pellets
11617
11690
+
His
GTG
[ENA]
¢þ
>C181084742
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
1246158
1246085
-
His
GTG
-
¡û
>C181084765
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
1170132
1170059
-
His
GTG
-
¡û
>C181084798
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
1069743
1069816
+
His
GTG
-
¡û
>C181084821
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
1170558
1170631
+
His
GTG
-
¡û
>C191015310
CP018176
Bacillota
Liquorilactobacillus hordei TMW 1.1822 [CP018176]
1742088
1742014
-
His
GTG
-
¡û
>C191172080
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
567140
567213
+
His
GTG
-
¡û
>C191172103
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
639969
640042
+
His
GTG
-
¡û
>W141699185
JMHU01000021
Bacillota
Ligilactobacillus animalis [JMHU]
1885
1958
+
His
GTG
[ENA]
¡û
>W141699200
JMHU01000026
Bacillota
Ligilactobacillus animalis [JMHU]
65953
65880
-
His
GTG
[ENA]
¡û
>W1910611592
LFJL01000002
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
18461
18388
-
His
GTG
[ENA]
¡û
>W1910611624
LFJL01000019
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
2200
2273
+
His
GTG
[ENA]
¡û
>W1910611675
LFJM01000018
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
2200
2273
+
His
GTG
[ENA]
¡û
>W1910611693
LFJM01000037
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
18461
18388
-
His
GTG
[ENA]
¡û
>W1910617294
LHUG01000018
Bacillota
Enterococcus canintestini 49 [LHUG]
39698
39625
-
His
GTG
[ENA]
¡û
>W1910617298
LHUG01000018
Bacillota
Enterococcus canintestini 49 [LHUG]
39269
39196
-
His
GTG
[ENA]
¡û
>W1910617299
LHUG01000018
Bacillota
Enterococcus canintestini 49 [LHUG]
31128
31055
-
His
GTG
[ENA]
¡û
>W1911754032
QWMU01000005
Bacillota
Ligilactobacillus murinus 510-9 [QWMU]
36270
36197
-
His
GTG
[ENA]
¡û
>W1911754055
QWMU01000142
Bacillota
Ligilactobacillus murinus 510-9 [QWMU]
1691
1618
-
His
GTG
[ENA]
¡û
>W1911779606
QXPZ01000015
Bacillota
Atopobacter sp. AH10 [QXPZ]
122955
122882
-
His
GTG
[ENA]
¡û
>W1911814444
QZFR01000008
Bacillota
Ligilactobacillus murinus C-30 [QZFR]
36406
36333
-
His
GTG
[ENA]
¡û
>W1911814457
QZFR01000047
Bacillota
Ligilactobacillus murinus C-30 [QZFR]
773
846
+
His
GTG
[ENA]
¡û
>W1810225279
POVP01000004
Bacillota
Ligilactobacillus animalis NP51 [POVP]
258537
258464
-
His
GTG
[ENA]
¡û
>W1810225286
POVP01000009
Bacillota
Ligilactobacillus animalis NP51 [POVP]
65771
65698
-
His
GTG
[ENA]
¡û
>W1810813857
QRZW01000003
Bacillota
Enterococcus asini AF13-3-H [QRZW]
768
841
+
His
GTG
[ENA]
¡û
>W11141782
AEOF01000001
Bacillota
Ligilactobacillus animalis KCTC 3501 [AEOF]
65647
65574
-
His
GTG
[ENA]
¡û
>W11141792
AEOF01000016
Bacillota
Ligilactobacillus animalis KCTC 3501 [AEOF]
118
191
+
His
GTG
[ENA]
¡û
>W11184911
BACP01000063
Bacillota
Liquorilactobacillus mali KCTC 3596 [BACP]
710
784
+
His
GTG
[ENA]
¡û
>W1610031060
AYYN01000106
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
755
828
+
His
GTG
[ENA]
¡û
>W1610031087
AYYN01000145
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
1724
1797
+
His
GTG
[ENA]
¡û
>W1610031530
AYYW01000038
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
2974
2901
-
His
GTG
[ENA]
¡û
>W1610031540
AYYW01000042
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
675
748
+
His
GTG
[ENA]
¡û
>W1610031839
AYZD01000023
Bacillota
Liquorilactobacillus aquaticus DSM 21051 [AYZD]
73028
72955
-
His
GTG
[ENA]
¡û
>W1610031888
AYZE01000010
Bacillota
Liquorilactobacillus cacaonum DSM 21116 [AYZE]
754
828
+
His
GTG
[ENA]
¡û
>W1610031945
AYZF01000011
Bacillota
Liquorilactobacillus sucicola DSM 21376 = JCM 15457 [AYZF]
745
818
+
His
GTG
[ENA]
¡û
>W1610034681
AZDX01000094
Bacillota
Liquorilactobacillus hordei DSM 19519 [AZDX]
758
832
+
His
GTG
[ENA]
¡û
>W1610035069
AZEF01000010
Bacillota
Liquorilactobacillus capillatus DSM 19910 [AZEF]
748
821
+
His
GTG
[ENA]
¡û
>W1610035141
AZEG01000049
Bacillota
Liquorilactobacillus uvarum DSM 19971 [AZEG]
7154
7081
-
His
GTG
[ENA]
¡û
>W1610035206
AZEH01000042
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
794
867
+
His
GTG
[ENA]
¡û
>W1610035892
AZEV01000043
Bacillota
Liquorilactobacillus nagelii DSM 13675 [AZEV]
732
806
+
His
GTG
[ENA]
¡û
>W1610036878
AZFQ01000043
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [AZFQ]
758
832
+
His
GTG
[ENA]
¡û
>W1610037029
AZFT01000031
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
67294
67221
-
His
GTG
[ENA]
¡û
>W1610037072
AZFT01000053
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
997464
997391
-
His
GTG
[ENA]
¡û
>W1610037504
AZGB01000029
Bacillota
Liquorilactobacillus ghanensis DSM 18630 [AZGB]
740
814
+
His
GTG
[ENA]
¡û
>W1610046730
BBCQ01000087
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [BBCQ]
710
784
+
His
GTG
[ENA]
¡û
>W1610072847
BCVJ01000124
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
620
693
+
His
GTG
[ENA]
¡û
>W121044016
AHYZ01000196
Bacillota
Liquorilactobacillus vini DSM 20605 [AHYZ]
761
835
+
His
GTG
[ENA]
¡û
>W121044028
AHZA01000158
Bacillota
Liquorilactobacillus vini JP7.8.9 [AHZA]
545
619
+
His
GTG
[ENA]
¡û
>W1610527786
JQAR01000014
Bacillota
Liquorilactobacillus mali [JQAR]
760
834
+
His
GTG
[ENA]
¡û
>W1610529328
JQBZ01000025
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
809306
809232
-
His
GTG
[ENA]
¡û
>W1710028012
AYYN01000106
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
755
828
+
His
GTG
[ENA]
¡û
>W1710028039
AYYN01000145
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
1724
1797
+
His
GTG
[ENA]
¡û
>W1710028457
AYYW01000038
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
2974
2901
-
His
GTG
[ENA]
¡û
>W1710028467
AYYW01000042
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
675
748
+
His
GTG
[ENA]
¡û
>W1710028766
AYZD01000023
Bacillota
Liquorilactobacillus aquaticus DSM 21051 [AYZD]
73028
72955
-
His
GTG
[ENA]
¡û
>W1710028815
AYZE01000010
Bacillota
Liquorilactobacillus cacaonum DSM 21116 [AYZE]
754
828
+
His
GTG
[ENA]
¡û
>W1710028872
AYZF01000011
Bacillota
Liquorilactobacillus sucicola DSM 21376 = JCM 15457 [AYZF]
745
818
+
His
GTG
[ENA]
¡û
>W1710031808
AZDX01000094
Bacillota
Liquorilactobacillus hordei DSM 19519 [AZDX]
758
832
+
His
GTG
[ENA]
¡û
>W1710032196
AZEF01000010
Bacillota
Liquorilactobacillus capillatus DSM 19910 [AZEF]
748
821
+
His
GTG
[ENA]
¡û
>W1710032268
AZEG01000049
Bacillota
Liquorilactobacillus uvarum DSM 19971 [AZEG]
7154
7081
-
His
GTG
[ENA]
¡û
>W1710032333
AZEH01000042
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
794
867
+
His
GTG
[ENA]
¡û
>W1710032931
AZEV01000043
Bacillota
Liquorilactobacillus nagelii DSM 13675 [AZEV]
732
806
+
His
GTG
[ENA]
¡û
>W1710033917
AZFQ01000043
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [AZFQ]
758
832
+
His
GTG
[ENA]
¡û
>W1710034068
AZFT01000031
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
67294
67221
-
His
GTG
[ENA]
¡û
>W1710034111
AZFT01000053
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
997464
997391
-
His
GTG
[ENA]
¡û
>W1710034543
AZGB01000029
Bacillota
Liquorilactobacillus ghanensis DSM 18630 [AZGB]
740
814
+
His
GTG
[ENA]
¡û
>W1710043473
BBCQ01000087
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [BBCQ]
710
784
+
His
GTG
[ENA]
¡û
>W1710069965
BCVJ01000124
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
620
693
+
His
GTG
[ENA]
¡û
>W1710081619
BDFM01000169
Bacillota
Ligilactobacillus murinus [BDFM]
3565
3492
-
His
GTG
[ENA]
¡û
>W1710081650
BDFM01000342
Bacillota
Ligilactobacillus murinus [BDFM]
1960
1887
-
His
GTG
[ENA]
¡û
>W1710629417
JQAR01000014
Bacillota
Liquorilactobacillus mali [JQAR]
760
834
+
His
GTG
[ENA]
¡û
>W1710630918
JQBZ01000025
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
809306
809232
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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