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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301920 (112 seq.)
>W1711311668
MASC01000033
Bacillota
Clostridium perfringens [MASC]
4678
4753
+
Pro
TGG
[ENA]
¡û
>W1711311710
MASC01000063
Bacillota
Clostridium perfringens [MASC]
153654
153729
+
Pro
TGG
[ENA]
¡û
>W1711311721
MASC01000063
Bacillota
Clostridium perfringens [MASC]
154729
154804
+
Pro
TGG
[ENA]
¡û
>W131098403
AORM01000061
Bacillota
Clostridium botulinum CB11/1-1 [AORM]
394
319
-
Pro
TGG
[ENA]
¡û
>WENV180117519
OARK01008105
[OARK] human gut metagenome; ENVO:feces
153
78
-
Pro
TGG
[ENA]
¢þ
>WENV180122540
OASU01001550
[OASU] human gut metagenome; faeces
4203
4278
+
Pro
TGG
[ENA]
¢þ
>WENV180122620
OASU01006167
[OASU] human gut metagenome; faeces
636
711
+
Pro
TGG
[ENA]
¢þ
>WENV180129287
OATC01000262
[OATC] human gut metagenome; faeces
15677
15752
+
Pro
TGG
[ENA]
¢þ
>WENV180234510
OBCQ01135510
[OBCQ] human gut metagenome; human gut
97
22
-
Pro
TGG
[ENA]
¢þ
>WENV180337785
OBLG01125509
[OBLG] human gut metagenome; human gut
135
210
+
Pro
TGG
[ENA]
¢þ
>WENV180412014
OBUZ01019832
[OBUZ] human gut metagenome; faeces
356
281
-
Pro
TGG
[ENA]
¢þ
>WENV180485340
OBZJ01022433
[OBZJ] human gut metagenome; faeces
148
223
+
Pro
TGG
[ENA]
¢þ
>WENV180546056
OCIU01000366
[OCIU] human gut metagenome; human gut
391
316
-
Pro
TGG
[ENA]
¢þ
>WENV180546394
OCIU01001337
[OCIU] human gut metagenome; human gut
15075
15150
+
Pro
TGG
[ENA]
¢þ
>WENV180605463
OCPT01000187
[OCPT] human gut metagenome; human gut
887
812
-
Pro
TGG
[ENA]
¢þ
>WENV180605898
OCPT01001671
[OCPT] human gut metagenome; human gut
528
453
-
Pro
TGG
[ENA]
¢þ
>WENV180606781
OCPT01150274
[OCPT] human gut metagenome; human gut
1
76
+
Pro
TGG
[ENA]
¢þ
>WENV180621584
OCQC01002869
[OCQC] human gut metagenome; human gut
294
219
-
Pro
TGG
[ENA]
¢þ
>WENV181327452
OFLQ01000064
[OFLQ] metagenome; faeces
153
78
-
Pro
TGG
[ENA]
¢þ
>WENV181327479
OFLQ01000104
[OFLQ] metagenome; faeces
38524
38599
+
Pro
TGG
[ENA]
¢þ
>WENV181417679
OGCM01000481
[OGCM] human gut metagenome; human gut
2397
2322
-
Pro
TGG
[ENA]
¢þ
>W141142999
AWRZ01000017
Bacillota
Clostridium perfringens JJC [AWRZ]
33098
33173
+
Pro
TGG
[ENA]
¡û
>WENV181502444
OGGI01032475
[OGGI] metagenome; Human gut stool
1030
1105
+
Pro
TGG
[ENA]
¢þ
>WENV181514018
OGGV01000160
[OGGV] metagenome; Human gut stool
9737
9662
-
Pro
TGG
[ENA]
¢þ
>WENV181626351
OGML01019804
[OGML] metagenome; Human gut stool
1764
1689
-
Pro
TGG
[ENA]
¢þ
>WENV181804998
OGSH01000219
[OGSH] human gut metagenome; fecal sample 5 from infant 6
1532
1457
-
Pro
TGG
[ENA]
¢þ
>WENV181805093
OGSH01000581
[OGSH] human gut metagenome; fecal sample 5 from infant 6
14251
14326
+
Pro
TGG
[ENA]
¢þ
>WENV181805174
OGSH01001256
[OGSH] human gut metagenome; fecal sample 5 from infant 6
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV181805192
OGSH01001740
[OGSH] human gut metagenome; fecal sample 5 from infant 6
266
191
-
Pro
TGG
[ENA]
¢þ
>WENV181805246
OGSH01008291
[OGSH] human gut metagenome; fecal sample 5 from infant 6
486
411
-
Pro
TGG
[ENA]
¢þ
>WENV181811368
OGSY01001177
[OGSY] human gut metagenome; fecal sample 5 from infant 8
6667
6742
+
Pro
TGG
[ENA]
¢þ
>WENV181833961
OGUQ01018356
[OGUQ] metagenome; Human gut stool
1719
1644
-
Pro
TGG
[ENA]
¢þ
>WENV182410160
OIFK01000236
[OIFK] human gut metagenome; stool
32864
32939
+
Pro
TGG
[ENA]
¢þ
>WENV182410169
OIFK01000236
[OIFK] human gut metagenome; stool
33677
33752
+
Pro
TGG
[ENA]
¢þ
>WENV182410207
OIFK01000481
[OIFK] human gut metagenome; stool
14101
14176
+
Pro
TGG
[ENA]
¢þ
>WENV182410766
OIFM01000030
[OIFM] human gut metagenome; stool
2543
2468
-
Pro
TGG
[ENA]
¢þ
>WENV182410775
OIFM01000030
[OIFM] human gut metagenome; stool
1733
1658
-
Pro
TGG
[ENA]
¢þ
>WENV182410810
OIFM01000089
[OIFM] human gut metagenome; stool
14280
14355
+
Pro
TGG
[ENA]
¢þ
>WENV182411766
OIFQ01000043
[OIFQ] human gut metagenome; stool
102926
103001
+
Pro
TGG
[ENA]
¢þ
>WENV182411842
OIFQ01000167
[OIFQ] human gut metagenome; stool
14287
14362
+
Pro
TGG
[ENA]
¢þ
>WENV182613939
OJKA01037984
[OJKA] metagenome; faeces
207
132
-
Pro
TGG
[ENA]
¢þ
>WENV182763474
OJRO01010757
[OJRO] human gut metagenome; stool sample
1083
1158
+
Pro
TGG
[ENA]
¢þ
>WENV182827632
OKDB01001057
[OKDB] human gut metagenome; human gut
101
26
-
Pro
TGG
[ENA]
¢þ
>WENV182856264
OKNJ01000095
[OKNJ] human gut metagenome; human gut
132
57
-
Pro
TGG
[ENA]
¢þ
>WENV182963274
OKWQ01000046
[OKWQ] human gut metagenome; stool
229
154
-
Pro
TGG
[ENA]
¢þ
>WENV182963431
OKWQ01000351
[OKWQ] human gut metagenome; stool
2675
2600
-
Pro
TGG
[ENA]
¢þ
>WENV182963510
OKWQ01000847
[OKWQ] human gut metagenome; stool
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV182963526
OKWQ01001078
[OKWQ] human gut metagenome; stool
74
1
-
Pro
TGG
[ENA]
¢þ
>WENV182963537
OKWQ01001329
[OKWQ] human gut metagenome; stool
74
1
-
Pro
TGG
[ENA]
¢þ
>WENV182963569
OKWQ01002317
[OKWQ] human gut metagenome; stool
2512
2437
-
Pro
TGG
[ENA]
¢þ
>WENV183065717
OLIJ01008312
[OLIJ] metagenome; faeces
801
726
-
Pro
TGG
[ENA]
¢þ
>WENV183147063
OLOM01071640
[OLOM] human gut metagenome; faeces
508
583
+
Pro
TGG
[ENA]
¢þ
>WENV183159498
OLOU01003385
[OLOU] human gut metagenome; faeces
7612
7537
-
Pro
TGG
[ENA]
¢þ
>WENV183173383
OLPD01003062
[OLPD] human gut metagenome; faeces
3659
3734
+
Pro
TGG
[ENA]
¢þ
>WENV170662109
JXWV01200233
[JXWV] soil metagenome; rice field; organic FYM Plot
148
223
+
Pro
TGG
[ENA]
¢þ
>C181214896
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
2820862
2820787
-
Pro
TGG
-
¡û
>C181214907
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
2819787
2819712
-
Pro
TGG
-
¡û
>C181214936
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
360671
360596
-
Pro
TGG
-
¡û
>W1910693828
MDJF01000011
Bacillota
Clostridium perfringens 13/0815-D [MDJF]
782
707
-
Pro
TGG
[ENA]
¡û
>W1910693855
MDJF01000018
Bacillota
Clostridium perfringens 13/0815-D [MDJF]
13219
13144
-
Pro
TGG
[ENA]
¡û
>W1910693891
MDJF01000028
Bacillota
Clostridium perfringens 13/0815-D [MDJF]
308
233
-
Pro
TGG
[ENA]
¡û
>W1911533812
OKRA01000002
Bacillota
Clostridium cagae Marseille-P4344 [OKRA]
214848
214923
+
Pro
TGG
[ENA]
¡û
>W1911533815
OKRA01000002
Bacillota
Clostridium cagae Marseille-P4344 [OKRA]
215332
215407
+
Pro
TGG
[ENA]
¡û
>W1911723597
QRFV01000009
Bacillota
Clostridium perfringens 83921_1_2 [QRFV]
65410
65485
+
Pro
TGG
[ENA]
¡û
>W1911723628
QRFV01000035
Bacillota
Clostridium perfringens 83921_1_2 [QRFV]
11732
11657
-
Pro
TGG
[ENA]
¡û
>W1911723903
QRHB01000050
Bacillota
Clostridium perfringens 79385-4 [QRHB]
11731
11656
-
Pro
TGG
[ENA]
¡û
>W1810178731
PJSH01000002
Bacillota
Clostridium perfringens W1319 [PJSH]
496869
496944
+
Pro
TGG
[ENA]
¡û
>W1810178754
PJSH01000003
Bacillota
Clostridium perfringens W1319 [PJSH]
6572
6497
-
Pro
TGG
[ENA]
¡û
>W1810178765
PJSH01000003
Bacillota
Clostridium perfringens W1319 [PJSH]
5498
5423
-
Pro
TGG
[ENA]
¡û
>W1810179345
PJSP01000006
Bacillota
Clostridium perfringens SAF-1 [PJSP]
12920
12845
-
Pro
TGG
[ENA]
¡û
>W1810179366
PJSP01000063
Bacillota
Clostridium perfringens SAF-1 [PJSP]
6585
6510
-
Pro
TGG
[ENA]
¡û
>W1810179377
PJSP01000063
Bacillota
Clostridium perfringens SAF-1 [PJSP]
5510
5435
-
Pro
TGG
[ENA]
¡û
>W1810179528
PJSR01000001
Bacillota
Clostridium perfringens PC5 [PJSR]
234639
234714
+
Pro
TGG
[ENA]
¡û
>W1810179539
PJSR01000001
Bacillota
Clostridium perfringens PC5 [PJSR]
235714
235789
+
Pro
TGG
[ENA]
¡û
>W1810179567
PJSR01000002
Bacillota
Clostridium perfringens PC5 [PJSR]
335551
335626
+
Pro
TGG
[ENA]
¡û
>W1810179594
PJSS01000001
Bacillota
Clostridium perfringens PBS5 [PJSS]
2303880
2303953
+
Pro
TGG
[ENA]
¡û
>W1810179629
PJSS01000003
Bacillota
Clostridium perfringens PBS5 [PJSS]
5669
5594
-
Pro
TGG
[ENA]
¡û
>W1810180056
PJSY01000033
Bacillota
Clostridium perfringens ITX1105-12MP [PJSY]
26011
26086
+
Pro
TGG
[ENA]
¡û
>W1810180067
PJSY01000033
Bacillota
Clostridium perfringens ITX1105-12MP [PJSY]
27086
27161
+
Pro
TGG
[ENA]
¡û
>W1810180084
PJSY01000066
Bacillota
Clostridium perfringens ITX1105-12MP [PJSY]
4627
4702
+
Pro
TGG
[ENA]
¡û
>W1810180217
PJTA01000004
Bacillota
Clostridium perfringens FC2 [PJTA]
12937
12862
-
Pro
TGG
[ENA]
¡û
>W1810180243
PJTA01000018
Bacillota
Clostridium perfringens FC2 [PJTA]
6199
6274
+
Pro
TGG
[ENA]
¡û
>W1810180252
PJTA01000018
Bacillota
Clostridium perfringens FC2 [PJTA]
7228
7303
+
Pro
TGG
[ENA]
¡û
>W1810180267
PJTA01000072
Bacillota
Clostridium perfringens FC2 [PJTA]
4
79
+
Pro
TGG
[ENA]
¡û
>W1810180860
PJTI01000004
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
185649
185724
+
Pro
TGG
[ENA]
¡û
>W1810180872
PJTI01000006
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
161006
161081
+
Pro
TGG
[ENA]
¡û
>W1810180905
PJTI01000086
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
146
71
-
Pro
TGG
[ENA]
¡û
>W1810180913
PJTI01000109
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
4
79
+
Pro
TGG
[ENA]
¡û
>W1810534667
QDAF01000013
Bacillota
Clostridium perfringens BzA [QDAF]
83768
83843
+
Pro
TGG
[ENA]
¡û
>W1810534688
QDAF01000032
Bacillota
Clostridium perfringens BzA [QDAF]
13070
12995
-
Pro
TGG
[ENA]
¡û
>C151070125
CP010520
Bacillota
Clostridium botulinum NCTC 8266 [CP010520]
416643
416718
+
Pro
TGG
[Ensembl]
¡û
>C151070128
CP010520
Bacillota
Clostridium botulinum NCTC 8266 [CP010520]
417130
417205
+
Pro
TGG
[Ensembl]
¡û
>W1511506725
JXMR01000001
Bacillota
Clostridium botulinum NCTC 11219 [JXMR]
1525805
1525880
+
Pro
TGG
[ENA]
¡û
>W1511506728
JXMR01000001
Bacillota
Clostridium botulinum NCTC 11219 [JXMR]
1526287
1526362
+
Pro
TGG
[ENA]
¡û
>W1610061681
BCMV01000002
Bacillota
Sarcina ventriculi [BCMV]
2994
2919
-
Pro
TGG
[ENA]
¡û
>W1610061716
BCMV01000016
Bacillota
Sarcina ventriculi [BCMV]
114815
114890
+
Pro
TGG
[ENA]
¡û
>W1610061722
BCMV01000034
Bacillota
Sarcina ventriculi [BCMV]
16097
16172
+
Pro
TGG
[ENA]
¡û
>W1610061728
BCMV01000082
Bacillota
Sarcina ventriculi [BCMV]
3825
3900
+
Pro
TGG
[ENA]
¡û
>W1610100155
CYYX01000002
Bacillota
Clostridium perfringens [CYYX]
12946
12871
-
Pro
TGG
[ENA]
¡û
>W1610100165
CYYX01000003
Bacillota
Clostridium perfringens [CYYX]
188444
188519
+
Pro
TGG
[ENA]
¡û
>W1610100205
CYYX01000043
Bacillota
Clostridium perfringens [CYYX]
266
191
-
Pro
TGG
[ENA]
¡û
>W1610601326
LFOM01000002
Bacillota
Clostridium botulinum [LFOM]
218185
218260
+
Pro
TGG
[ENA]
¡û
>W1610602308
LFPE01000002
Bacillota
Clostridium botulinum [LFPE]
218185
218260
+
Pro
TGG
[ENA]
¡û
>W1710059346
BCMV01000002
Bacillota
Sarcina ventriculi [BCMV]
2994
2919
-
Pro
TGG
[ENA]
¡û
>W1710059381
BCMV01000016
Bacillota
Sarcina ventriculi [BCMV]
114815
114890
+
Pro
TGG
[ENA]
¡û
>W1710059387
BCMV01000034
Bacillota
Sarcina ventriculi [BCMV]
16097
16172
+
Pro
TGG
[ENA]
¡û
>W1710059393
BCMV01000082
Bacillota
Sarcina ventriculi [BCMV]
3825
3900
+
Pro
TGG
[ENA]
¡û
>W1710102910
CYYX01000002
Bacillota
Clostridium perfringens [CYYX]
12946
12871
-
Pro
TGG
[ENA]
¡û
>W1710102920
CYYX01000003
Bacillota
Clostridium perfringens [CYYX]
188444
188519
+
Pro
TGG
[ENA]
¡û
>W1710102960
CYYX01000043
Bacillota
Clostridium perfringens [CYYX]
266
191
-
Pro
TGG
[ENA]
¡û
>W1710722842
LFOM01000002
Bacillota
Clostridium botulinum [LFOM]
218185
218260
+
Pro
TGG
[ENA]
¡û
>W1710723824
LFPE01000002
Bacillota
Clostridium botulinum [LFPE]
218185
218260
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK