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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301940 (18 seq.)
>W1710777976
LJCO01000011
Bacillota
Alicyclobacillus ferrooxydans [LJCO]
85611
85686
+
Ala
CGC
[ENA]
¡û
>W131223391
AUCA01000028
Bacillota
Alicyclobacillus contaminans DSM 17975 [AUCA]
28122
28047
-
Ala
CGC
[ENA]
¡û
>W131236328
AUMH01000026
Bacillota
Alicyclobacillus herbarius DSM 13609 [AUMH]
24726
24651
-
Ala
CGC
[ENA]
¡û
>WENV183673290
ORJL011261889
[ORJL] groundwater metagenome; groundwater
5394
5469
+
Ala
CGC
[ENA]
¢þ
>C181109250
CP024955
Bacillota
Kyrpidia spormannii EA-1 [CP024955]
1353251
1353326
+
Ala
CGC
-
¡û
>C181109267
CP024955
Bacillota
Kyrpidia spormannii EA-1 [CP024955]
1484800
1484875
+
Ala
CGC
-
¡û
>C151016314
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
1197995
1198070
+
Ala
CGC
[Ensembl]
¡û
>C10102447
CP002017
Bacillota
Kyrpidia tusciae DSM 2912 [CP002017]
1927544
1927469
-
Ala
CGC
[Ensembl]
¡û
>C10102464
CP002017
Bacillota
Kyrpidia tusciae DSM 2912 [CP002017]
1797900
1797825
-
Ala
CGC
[Ensembl]
¡û
>W11181389
AGJB01000002
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
331802
331727
-
Ala
CGC
[ENA]
¡û
>W1610067186
BCQI01000012
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
7471
7546
+
Ala
CGC
[ENA]
¡û
>W1610068814
BCRP01000030
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
2981
3056
+
Ala
CGC
[ENA]
¡û
>W1610548807
JXBW01000003
Bacillota
Alicyclobacillus tengchongensis [JXBW]
174324
174249
-
Ala
CGC
[ENA]
¡û
>W1610642162
LJCO01000011
Bacillota
Alicyclobacillus ferrooxydans [LJCO]
85611
85686
+
Ala
CGC
[ENA]
¡û
>W1710064559
BCQI01000012
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
7471
7546
+
Ala
CGC
[ENA]
¡û
>W1710066187
BCRP01000030
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
2981
3056
+
Ala
CGC
[ENA]
¡û
>W1710529945
FNOJ01000020
Bacillota
Alicyclobacillus hesperidum [FNOJ]
12104
12179
+
Ala
CGC
[ENA]
¡û
>W1710652423
JXBW01000003
Bacillota
Alicyclobacillus tengchongensis [JXBW]
174324
174249
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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