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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302004 (88 seq.)
>W1711766955
MUZD01000003
Bacillota
Sedimentibacter sp. SX930 [MUZD]
252817
252743
-
Val
TAC
[ENA]
¡û
>W1711766969
MUZD01000010
Bacillota
Sedimentibacter sp. SX930 [MUZD]
196
270
+
Val
TAC
[ENA]
¡û
>W1711766978
MUZD01000014
Bacillota
Sedimentibacter sp. SX930 [MUZD]
45410
45333
-
Val
TAC
[ENA]
¡û
>W1711767006
MUZD01000021
Bacillota
Sedimentibacter sp. SX930 [MUZD]
440
366
-
Val
TAC
[ENA]
¡û
>W1711767026
MUZD01000028
Bacillota
Sedimentibacter sp. SX930 [MUZD]
218
292
+
Val
TAC
[ENA]
¡û
>W1711767030
MUZD01000028
Bacillota
Sedimentibacter sp. SX930 [MUZD]
750
824
+
Val
TAC
[ENA]
¡û
>W1711767051
MUZD01000037
Bacillota
Sedimentibacter sp. SX930 [MUZD]
53
127
+
Val
TAC
[ENA]
¡û
>C171098923
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
319068
319142
+
Val
TAC
-
¡û
>C171098940
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
1826568
1826494
-
Val
TAC
-
¡û
>C171098958
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
1824749
1824675
-
Val
TAC
-
¡û
>C171098968
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
1764341
1764269
-
Val
TAC
-
¡û
>C171098976
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
985710
985636
-
Val
TAC
-
¡û
>WENV180284100
OBID01015203
[OBID] metagenome; sludge
156
82
-
Val
TAC
[ENA]
¢þ
>WENV180312012
OBJT01725639
[OBJT] soil metagenome; soil
77
3
-
Val
TAC
[ENA]
¢þ
>WENV170552882
CXWK01003304
[CXWK] wastewater metagenome; activated sludge
2594
2520
-
Val
TAC
[ENA]
¢þ
>WENV170971969
MTKX01016631
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
300
374
+
Val
TAC
[ENA]
¢þ
>WENV170979300
MTKZ01084004
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1732
1806
+
Val
TAC
[ENA]
¢þ
>W1910442011
FWEY01000005
Bacillota
Trichococcus pasteurii [FWEY]
136429
136506
+
Val
TAC
[ENA]
¡û
>W1910442020
FWEY01000008
Bacillota
Trichococcus pasteurii [FWEY]
127434
127360
-
Val
TAC
[ENA]
¡û
>W1910442039
FWEY01000012
Bacillota
Trichococcus pasteurii [FWEY]
729
803
+
Val
TAC
[ENA]
¡û
>W1910442048
FWEY01000019
Bacillota
Trichococcus pasteurii [FWEY]
12128
12054
-
Val
TAC
[ENA]
¡û
>W1810391705
PXZT01000022
Bacillota
Trichococcus alkaliphilus B5 [PXZT]
36750
36676
-
Val
TAC
[ENA]
¡û
>W1810391710
PXZT01000024
Bacillota
Trichococcus alkaliphilus B5 [PXZT]
67
141
+
Val
TAC
[ENA]
¡û
>W1810477011
QAOM01000001
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
432
506
+
Val
TAC
[ENA]
¡û
>W1810477034
QAOM01000021
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
54974
54900
-
Val
TAC
[ENA]
¡û
>W1810477042
QAOM01000022
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
41252
41175
-
Val
TAC
[ENA]
¡û
>W1810477055
QAOM01000049
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
262
336
+
Val
TAC
[ENA]
¡û
>W1810477059
QAOM01000049
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
856
930
+
Val
TAC
[ENA]
¡û
>W1510021065
BBYN01000027
Bacillota
Jeotgalibaca dankookensis KCCM 90229 [BBYN]
279
351
+
Val
TAC
[ENA]
¡û
>W1510021075
BBYN01000042
Bacillota
Jeotgalibaca dankookensis KCCM 90229 [BBYN]
2021
1947
-
Val
TAC
[ENA]
¡û
>W1510021094
BBYN01000043
Bacillota
Jeotgalibaca dankookensis KCCM 90229 [BBYN]
1839
1765
-
Val
TAC
[ENA]
¡û
>W1510021117
BBYO01000007
Bacillota
Jeotgalibaca dankookensis CL-AS1 [BBYO]
247198
247124
-
Val
TAC
[ENA]
¡û
>W1510021140
BBYO01000019
Bacillota
Jeotgalibaca dankookensis CL-AS1 [BBYO]
151
223
+
Val
TAC
[ENA]
¡û
>W1510021146
BBYO01000021
Bacillota
Jeotgalibaca dankookensis CL-AS1 [BBYO]
62304
62230
-
Val
TAC
[ENA]
¡û
>W1510021164
BBYO01000021
Bacillota
Jeotgalibaca dankookensis CL-AS1 [BBYO]
60486
60412
-
Val
TAC
[ENA]
¡û
>W1510021175
BBYO01000034
Bacillota
Jeotgalibaca dankookensis CL-AS1 [BBYO]
9725
9651
-
Val
TAC
[ENA]
¡û
>W1610434054
FJMZ01000004
Bacillota
Trichococcus flocculiformis [FJMZ]
775
849
+
Val
TAC
[ENA]
¡û
>W1610434095
FJMZ01000029
Bacillota
Trichococcus flocculiformis [FJMZ]
506
583
+
Val
TAC
[ENA]
¡û
>W1610434119
FJMZ01000070
Bacillota
Trichococcus flocculiformis [FJMZ]
2519
2445
-
Val
TAC
[ENA]
¡û
>W1610434122
FJMZ01000070
Bacillota
Trichococcus flocculiformis [FJMZ]
2049
1975
-
Val
TAC
[ENA]
¡û
>W1610434151
FJMZ01000082
Bacillota
Trichococcus flocculiformis [FJMZ]
77
3
-
Val
TAC
[ENA]
¡û
>W1610434168
FJNA01000001
Bacillota
Trichococcus collinsii [FJNA]
726311
726385
+
Val
TAC
[ENA]
¡û
>W1610434172
FJNA01000001
Bacillota
Trichococcus collinsii [FJNA]
726844
726918
+
Val
TAC
[ENA]
¡û
>W1610434189
FJNA01000001
Bacillota
Trichococcus collinsii [FJNA]
725070
724996
-
Val
TAC
[ENA]
¡û
>W1610434200
FJNA01000002
Bacillota
Trichococcus collinsii [FJNA]
574919
574993
+
Val
TAC
[ENA]
¡û
>W1610434215
FJNA01000002
Bacillota
Trichococcus collinsii [FJNA]
889460
889386
-
Val
TAC
[ENA]
¡û
>W1610434243
FJNB01000004
Bacillota
Trichococcus ilyis R210 [FJNB]
1020
1094
+
Val
TAC
[ENA]
¡û
>W1610434282
FJNB01000021
Bacillota
Trichococcus ilyis R210 [FJNB]
455
532
+
Val
TAC
[ENA]
¡û
>W1610434307
FJNB01000029
Bacillota
Trichococcus ilyis R210 [FJNB]
6415
6487
+
Val
TAC
[ENA]
¡û
>W1610434328
FJND01000003
Bacillota
Trichococcus sp. ES5 [FJND]
1195
1269
+
Val
TAC
[ENA]
¡û
>W1610434343
FJND01000011
Bacillota
Trichococcus sp. ES5 [FJND]
97151
97077
-
Val
TAC
[ENA]
¡û
>W1610434353
FJND01000018
Bacillota
Trichococcus sp. ES5 [FJND]
387
464
+
Val
TAC
[ENA]
¡û
>W1610434371
FJND01000044
Bacillota
Trichococcus sp. ES5 [FJND]
4811
4737
-
Val
TAC
[ENA]
¡û
>W1610434375
FJND01000044
Bacillota
Trichococcus sp. ES5 [FJND]
4240
4166
-
Val
TAC
[ENA]
¡û
>W1610434395
FJNE01000002
Bacillota
Trichococcus palustris [FJNE]
506907
506835
-
Val
TAC
[ENA]
¡û
>W1610434429
FJNE01000004
Bacillota
Trichococcus palustris [FJNE]
237018
237090
+
Val
TAC
[ENA]
¡û
>W1610434454
FJNE01000008
Bacillota
Trichococcus palustris [FJNE]
148708
148634
-
Val
TAC
[ENA]
¡û
>W1610434466
FJNE01000008
Bacillota
Trichococcus palustris [FJNE]
145664
145590
-
Val
TAC
[ENA]
¡û
>W1710433790
FJMZ01000004
Bacillota
Trichococcus flocculiformis [FJMZ]
775
849
+
Val
TAC
[ENA]
¡û
>W1710433831
FJMZ01000029
Bacillota
Trichococcus flocculiformis [FJMZ]
506
583
+
Val
TAC
[ENA]
¡û
>W1710433855
FJMZ01000070
Bacillota
Trichococcus flocculiformis [FJMZ]
2519
2445
-
Val
TAC
[ENA]
¡û
>W1710433858
FJMZ01000070
Bacillota
Trichococcus flocculiformis [FJMZ]
2049
1975
-
Val
TAC
[ENA]
¡û
>W1710433887
FJMZ01000082
Bacillota
Trichococcus flocculiformis [FJMZ]
77
3
-
Val
TAC
[ENA]
¡û
>W1710433904
FJNA01000001
Bacillota
Trichococcus collinsii [FJNA]
726311
726385
+
Val
TAC
[ENA]
¡û
>W1710433908
FJNA01000001
Bacillota
Trichococcus collinsii [FJNA]
726844
726918
+
Val
TAC
[ENA]
¡û
>W1710433925
FJNA01000001
Bacillota
Trichococcus collinsii [FJNA]
725070
724996
-
Val
TAC
[ENA]
¡û
>W1710433936
FJNA01000002
Bacillota
Trichococcus collinsii [FJNA]
574919
574993
+
Val
TAC
[ENA]
¡û
>W1710433951
FJNA01000002
Bacillota
Trichococcus collinsii [FJNA]
889460
889386
-
Val
TAC
[ENA]
¡û
>W1710433979
FJNB01000004
Bacillota
Trichococcus ilyis R210 [FJNB]
1020
1094
+
Val
TAC
[ENA]
¡û
>W1710434018
FJNB01000021
Bacillota
Trichococcus ilyis R210 [FJNB]
455
532
+
Val
TAC
[ENA]
¡û
>W1710434043
FJNB01000029
Bacillota
Trichococcus ilyis R210 [FJNB]
6415
6487
+
Val
TAC
[ENA]
¡û
>W1710434064
FJND01000003
Bacillota
Trichococcus sp. ES5 [FJND]
1195
1269
+
Val
TAC
[ENA]
¡û
>W1710434079
FJND01000011
Bacillota
Trichococcus sp. ES5 [FJND]
97151
97077
-
Val
TAC
[ENA]
¡û
>W1710434089
FJND01000018
Bacillota
Trichococcus sp. ES5 [FJND]
387
464
+
Val
TAC
[ENA]
¡û
>W1710434107
FJND01000044
Bacillota
Trichococcus sp. ES5 [FJND]
4811
4737
-
Val
TAC
[ENA]
¡û
>W1710434111
FJND01000044
Bacillota
Trichococcus sp. ES5 [FJND]
4240
4166
-
Val
TAC
[ENA]
¡û
>W1710434131
FJNE01000002
Bacillota
Trichococcus palustris [FJNE]
506907
506835
-
Val
TAC
[ENA]
¡û
>W1710434165
FJNE01000004
Bacillota
Trichococcus palustris [FJNE]
237018
237090
+
Val
TAC
[ENA]
¡û
>W1710434190
FJNE01000008
Bacillota
Trichococcus palustris [FJNE]
148708
148634
-
Val
TAC
[ENA]
¡û
>W1710434202
FJNE01000008
Bacillota
Trichococcus palustris [FJNE]
145664
145590
-
Val
TAC
[ENA]
¡û
>W1710532387
FNQH01000001
Bacillota
Trichococcus collinsii [FNQH]
460
534
+
Val
TAC
[ENA]
¡û
>W1710541964
FNYT01000055
Bacillota
Trichococcus ilyis DSM 22150 [FNYT]
734
808
+
Val
TAC
[ENA]
¡û
>W1710560561
FONM01000009
Bacillota
Trichococcus pasteurii [FONM]
328
402
+
Val
TAC
[ENA]
¡û
>W1710563909
FOQC01000004
Bacillota
Trichococcus flocculiformis [FOQC]
117482
117408
-
Val
TAC
[ENA]
¡û
>W1710563929
FOQC01000023
Bacillota
Trichococcus flocculiformis [FOQC]
36780
36703
-
Val
TAC
[ENA]
¡û
>W1710584588
FQVR01000005
Bacillota
Trichococcus flocculiformis [FQVR]
183310
183236
-
Val
TAC
[ENA]
¡û
>W1710584601
FQVR01000010
Bacillota
Trichococcus flocculiformis [FQVR]
96404
96330
-
Val
TAC
[ENA]
¡û
>W1710584617
FQVR01000039
Bacillota
Trichococcus flocculiformis [FQVR]
13765
13688
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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