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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30210 (51 seq.)
>W1711711770
MTBG01000001
Alphaproteobacteria
Pseudoruegeria sp. SK021 [MTBG]
93081
92992
-
Ser
GCT
[ENA]
¡û
>W1711798614
MWVJ01000133
Alphaproteobacteria
Pseudophaeobacter leonis [MWVJ]
5513
5602
+
Ser
GCT
[ENA]
¡û
>C171047872
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
2955834
2955745
-
Ser
GCT
-
¡û
>WENV180361603
OBNV01107487
[OBNV] marine metagenome; ENVO:00002042
33
122
+
Ser
GCT
[ENA]
¡û
>WENV180384748
OBOY01036711
[OBOY] marine metagenome; Sterile flask
201
290
+
Ser
GCT
[ENA]
¡û
>WENV180586056
OCOM01012928
[OCOM] marine metagenome; seawater
517
428
-
Ser
GCT
[ENA]
¡û
>WENV180592568
OCOW01020274
[OCOW] marine metagenome; Sterivex cartridges
397
308
-
Ser
GCT
[ENA]
¡û
>W141082511
AUNB01000049
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
7353
7442
+
Ser
GCT
[ENA]
¡û
>WENV181318719
OFKA01011066
[OFKA] marine metagenome; seawater
502
413
-
Ser
GCT
[ENA]
¡û
>WENV181385779
OFRK01002710
[OFRK] marine metagenome; sea ice
162
251
+
Ser
GCT
[ENA]
¡û
>W141151640
AXBF01000002
Alphaproteobacteria
Pseudophaeobacter arcticus DSM 23566 [AXBF]
2934226
2934315
+
Ser
GCT
[ENA]
¡û
>WENV182567063
OJEN01001089
[OJEN] seawater metagenome; Sea water
7318
7229
-
Ser
GCT
[ENA]
¡û
>WENV182568068
OJEP01024489
[OJEP] seawater metagenome; Sea water
60
149
+
Ser
GCT
[ENA]
¡û
>WENV182584837
OJHG01015346
[OJHG] seawater metagenome; Sea water
451
362
-
Ser
GCT
[ENA]
¡û
>WENV182586903
OJHK01011447
[OJHK] seawater metagenome; Sea water
778
689
-
Ser
GCT
[ENA]
¡û
>WENV183623717
OOGA01047357
[OOGA] marine metagenome; sea ice
335
424
+
Ser
GCT
[ENA]
¡û
>WENV170315376
CESO01115604
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4647
4736
+
Ser
GCT
[ENA]
¡û
>WENV170385850
CETY01108057
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
167
256
+
Ser
GCT
[ENA]
¡û
>WENV170584107
FUFK010192007
[FUFK] metagenome; unknown
275
364
+
Ser
GCT
[ENA]
¡û
>WENV170672656
LAZR01000670
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
3775
3864
+
Ser
GCT
[ENA]
¡û
>WENV170705226
LLEQ01000480
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1706
1795
+
Ser
GCT
[ENA]
¡û
>WENV170889117
MDTC01269847
[MDTC] marine metagenome; seawater
2240
2151
-
Ser
GCT
[ENA]
¡û
>WENV170928287
MDTG01131298
[MDTG] marine metagenome; seawater
67
156
+
Ser
GCT
[ENA]
¡û
>PL191001394
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
781721
781810
+
Ser
GCT
[ENA]
¡û
>W141531735
JHEH01000074
Alphaproteobacteria
Thioclava dalianensis [JHEH]
4147
4236
+
Ser
GCT
[ENA]
¡û
>W09112273
ABXS01000041
Alphaproteobacteria
Roseobacter sp. GAI101 [ABXS]
82898
82809
-
Ser
GCT
[ENA]
¡û
>W1910005003
AWWI01000060
Alphaproteobacteria
Puniceibacterium antarcticum SM1211 [AWWI]
97472
97561
+
Ser
GCT
[ENA]
¡û
>W1911696528
QMEJ01000006
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
72891
72980
+
Ser
GCT
[ENA]
¡û
>W1911696571
QMEK01000003
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
124611
124522
-
Ser
GCT
[ENA]
¡û
>W2010073349
AWWI01000060
Alphaproteobacteria
Puniceibacterium antarcticum SM1211 [AWWI]
97472
97561
+
Ser
GCT
[ENA]
¡û
>W2010313176
CABWZK010000009
Alphaproteobacteria
Rhodobacteraceae bacterium [CABWZK]
15826
15915
+
Ser
GCT
[ENA]
¡û
>W2010313217
CABXKH010000025
Alphaproteobacteria
Rhodobacteraceae bacterium [CABXKH]
11642
11553
-
Ser
GCT
[ENA]
¡û
>W2010725684
JACIEI010000026
Alphaproteobacteria
Sulfitobacter undariae DSM 102234 [JACIEI]
5974
5885
-
Ser
GCT
[ENA]
¡û
>W2011276193
QMEJ01000006
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
72891
72980
+
Ser
GCT
[ENA]
¡û
>W2011276236
QMEK01000003
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
124611
124522
-
Ser
GCT
[ENA]
¡û
>W2011541905
SDAL01000001
Alphaproteobacteria
Rhodobacteraceae bacterium GH2-2 [SDAL]
1387878
1387789
-
Ser
GCT
[ENA]
¡û
>W2011658554
SOEB01000032
Alphaproteobacteria
Rhodovulum visakhapatnamense JA181 [SOEB]
13003
13092
+
Ser
GCT
[ENA]
¡û
>W2011978567
VCQM01000003
Alphaproteobacteria
Thioclava sp. BHET1 [VCQM]
95021
94932
-
Ser
GCT
[ENA]
¡û
>W2012130954
VSJK01000001
Alphaproteobacteria
Oceaniovalibus sp. ACAM 378 [VSJK]
349902
349813
-
Ser
GCT
[ENA]
¡û
>W2110028196
BMJV01000001
Alphaproteobacteria
Paraphaeobacter pallidus CGMCC 1.15762 [BMJV]
304404
304493
+
Ser
GCT
[ENA]
¡û
>W2110533954
JAGFNU010000006
Alphaproteobacteria
Pseudohalocynthiibacter aestuariivivens BS-W9 [JAGFNU]
3037
2948
-
Ser
GCT
[ENA]
¡û
>C231170394
CP081216
Alphaproteobacteria
Phaeobacter inhibens M625 [CP081216]
521850
521939
+
Ser
GCT
-
¡û
>C231170622
CP081235
Alphaproteobacteria
Phaeobacter inhibens M631 [CP081235]
523019
523108
+
Ser
GCT
-
¡û
>C231181727
CP083560
Alphaproteobacteria
Sulfitobacter sp. S223 [CP083560]
895344
895433
+
Ser
GCT
-
¡û
>W2110746848
LGTP01000012
Alphaproteobacteria
Roseobacter litoralis B14 [LGTP]
100673
100762
+
Ser
GCT
[ENA]
¡û
>C231204208
CP085167
Alphaproteobacteria
Sulfitobacter sp. DSM 110093 [CP085167]
2391115
2391026
-
Ser
GCT
-
¡û
>C241149196
CP051181
Alphaproteobacteria
Thalassovita gelatinovora NEB572 [CP051181]
3130559
3130648
+
Ser
GCT
-
¡û
>W1610092733
CYSA01000027
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
219078
219167
+
Ser
GCT
[ENA]
¡û
>W1710095988
CYSA01000027
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
219078
219167
+
Ser
GCT
[ENA]
¡û
>W1710570326
FOVB01000006
Alphaproteobacteria
Thioclava dalianensis [FOVB]
87892
87803
-
Ser
GCT
[ENA]
¡û
>W1710572920
FOXA01000067
Alphaproteobacteria
Tranquillimonas alkanivorans [FOXA]
910
999
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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