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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302187 (39 seq.)
>W1711501351
MKRN01000026
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
9109
9034
-
Lys
CTT
[ENA]
¡û
>W1711502265
MKSM01000128
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
12411
12336
-
Lys
CTT
[ENA]
¡û
>C014942
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
2990028
2989953
-
Lys
CTT
[Ensembl]
¡û
>C015376
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
2555306
2555231
-
Lys
CTT
[Ensembl]
¡û
>w012986
AAMY01000004
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
182035
182110
+
Lys
CTT
[ENA]
¡û
>WENV180063575
MPLX02362546
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
113
38
-
Lys
CTT
[ENA]
¡û
>W141007495
AGWY01000008
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
194346
194271
-
Lys
CTT
[ENA]
¡û
>W141007546
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
4095100
4095175
+
Lys
CTT
[ENA]
¡û
>WENV180094629
MTBK01019284
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
290
365
+
Lys
CTT
[ENA]
¡û
>W08007829
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
1284614
1284689
+
Lys
CTT
[ENA]
¡û
>W141261708
CCAZ010000046
Alphaproteobacteria
Afipia felis [CCAZ]
38262
38337
+
Lys
CTT
[ENA]
¡û
>WENV183729231
PJTQ01014231
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
910
835
-
Lys
CTT
[ENA]
¡û
>WENV183736670
PJUC01038404
[PJUC] soil metagenome; Soil enriched on filter paper
87
12
-
Lys
CTT
[ENA]
¡û
>WENV170143188
CENY01055513
[CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
123
198
+
Lys
CTT
[ENA]
¡û
>WENV170145783
CENZ01010860
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
92
167
+
Lys
CTT
[ENA]
¡û
>WENV170446977
CEUY01184036
[CEUY] marine metagenome genome assembly TARA_123_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
390
465
+
Lys
CTT
[ENA]
¡û
>WENV170551782
CXWJ01022922
[CXWJ] wastewater metagenome; activated sludge
836
911
+
Lys
CTT
[ENA]
¡û
>WENV170674132
LAZR01046330
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1220
1148
-
Lys
CTT
[ENA]
¡û
>WENV170680819
LFEF01024589
[LFEF] freshwater metagenome; waterbloom
2650
2575
-
Lys
CTT
[ENA]
¡û
>WENV170859405
MDTB01035855
[MDTB] marine metagenome; seawater
52230
52305
+
Lys
CTT
[ENA]
¡û
>C181001048
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
1967810
1967885
+
Lys
CTT
-
¡û
>C181155078
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
4020267
4020342
+
Lys
CTT
-
¡û
>C181155128
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
4020267
4020342
+
Lys
CTT
-
¡û
>W09102984
AAIS01000001
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
769429
769504
+
Lys
CTT
[ENA]
¡û
>W1910182866
BJNF01000106
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
11385
11460
+
Lys
CTT
[ENA]
¡û
>C09108128
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
1284300
1284375
+
Lys
CTT
-
¡û
>C151101067
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
2578160
2578085
-
Lys
CTT
[Ensembl]
¡û
>W2010096481
BJNF01000106
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
11385
11460
+
Lys
CTT
[ENA]
¡û
>W2010324699
CACUVI010000012
Alphaproteobacteria
Rhodospirillaceae bacterium LM-1 [CACUVI]
396756
396831
+
Lys
CTT
[ENA]
¡û
>W2011577819
SGWU01000002
Alphaproteobacteria
Variibacter gotjawalensis DSM 29671 [SGWU]
166551
166626
+
Lys
CTT
[ENA]
¡û
>W2011814138
UFSI01000001
Alphaproteobacteria
Afipia felis NCTC12499 [UFSI]
1422028
1422103
+
Lys
CTT
[ENA]
¡û
>W2011850120
UIGB01000001
Alphaproteobacteria
Afipia felis NCTC12722 [UIGB]
1422026
1422101
+
Lys
CTT
[ENA]
¡û
>W2110019151
BMCP01000002
Alphaproteobacteria
Agaricicola taiwanensis CCM 7684 [BMCP]
546943
547018
+
Lys
CTT
[ENA]
¡û
>W2110494849
JAFFQY010000055
Alphaproteobacteria
Roseococcus thiosulfatophilus RB-3 [JAFFQY]
33487
33412
-
Lys
CTT
[ENA]
¡û
>W10119562
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
191336
191261
-
Lys
CTT
[ENA]
¡û
>C11116278
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
2841278
2841203
-
Lys
CTT
[Ensembl]
¡û
>W11125828
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
191336
191261
-
Lys
CTT
[ENA]
¡û
>W11168466
AFOF01000035
Alphaproteobacteria
Bradyrhizobiaceae bacterium SG-6C [AFOF]
92241
92166
-
Lys
CTT
[ENA]
¡û
>C121002998
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
2840157
2840082
-
Lys
CTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK