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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302196 (102 seq.)
>W1710905386
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
45446
45521
+
Lys
TTT
[ENA]
¡û
>W1710905387
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
45545
45620
+
Lys
TTT
[ENA]
¡û
>W1710914587
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
5725
5650
-
Lys
TTT
[ENA]
¡û
>W1710914588
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
5626
5551
-
Lys
TTT
[ENA]
¡û
>W1711413573
MGWI01000026
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
18677
18602
-
Lys
TTT
[ENA]
¡û
>W1711413574
MGWI01000026
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
18573
18498
-
Lys
TTT
[ENA]
¡û
>W1711431494
MIJV01000009
Bacteroidota
Flavobacterium psychrophilum [MIJV]
47853
47928
+
Lys
TTT
[ENA]
¡û
>W1711431495
MIJV01000009
Bacteroidota
Flavobacterium psychrophilum [MIJV]
47952
48027
+
Lys
TTT
[ENA]
¡û
>W1711431531
MIJW01000009
Bacteroidota
Flavobacterium psychrophilum [MIJW]
26354
26429
+
Lys
TTT
[ENA]
¡û
>W1711431532
MIJW01000009
Bacteroidota
Flavobacterium psychrophilum [MIJW]
26453
26528
+
Lys
TTT
[ENA]
¡û
>W1711712452
MTBY01000014
Bacteroidota
Flavobacterium psychrophilum [MTBY]
61595
61520
-
Lys
TTT
[ENA]
¡û
>W1711712453
MTBY01000014
Bacteroidota
Flavobacterium psychrophilum [MTBY]
61496
61421
-
Lys
TTT
[ENA]
¡û
>W1711712487
MTBZ01000010
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
83485
83410
-
Lys
TTT
[ENA]
¡û
>W1711712488
MTBZ01000010
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
83386
83311
-
Lys
TTT
[ENA]
¡û
>W1711712564
MTCB01000003
Bacteroidota
Flavobacterium psychrophilum [MTCB]
157916
157841
-
Lys
TTT
[ENA]
¡û
>W1711712565
MTCB01000003
Bacteroidota
Flavobacterium psychrophilum [MTCB]
157817
157742
-
Lys
TTT
[ENA]
¡û
>W1711712654
MTCD01000267
Bacteroidota
Flavobacterium psychrophilum [MTCD]
783
708
-
Lys
TTT
[ENA]
¡û
>W1711712655
MTCD01000267
Bacteroidota
Flavobacterium psychrophilum [MTCD]
684
609
-
Lys
TTT
[ENA]
¡û
>WENV180039130
LLBY010028990
[LLBY] soil metagenome; soil from tomato rhizosphere
5424
5351
-
Lys
TTT
[ENA]
¢þ
>WENV180039131
LLBY010028990
[LLBY] soil metagenome; soil from tomato rhizosphere
5324
5251
-
Lys
TTT
[ENA]
¢þ
>WENV180040976
LLBZ010031061
[LLBZ] soil metagenome; soil from tomato rhizosphere
4590
4663
+
Lys
TTT
[ENA]
¢þ
>WENV180040977
LLBZ010031061
[LLBZ] soil metagenome; soil from tomato rhizosphere
4690
4763
+
Lys
TTT
[ENA]
¢þ
>WENV180208901
OBAJ01087967
[OBAJ] marine metagenome; Coastal water
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV180377501
OBON01031235
[OBON] marine metagenome; sea water
445
518
+
Lys
TTT
[ENA]
¢þ
>W141093446
AVBI01000017
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
328
253
-
Lys
TTT
[ENA]
¡û
>W141093447
AVBI01000017
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
223
148
-
Lys
TTT
[ENA]
¡û
>W141097134
AVGG01000017
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
104488
104413
-
Lys
TTT
[ENA]
¡û
>W141097135
AVGG01000017
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
104382
104307
-
Lys
TTT
[ENA]
¡û
>WENV181836536
OGVJ01011253
[OGVJ] freshwater metagenome; freshwater
263
190
-
Lys
TTT
[ENA]
¢þ
>WENV181836537
OGVJ01011253
[OGVJ] freshwater metagenome; freshwater
163
90
-
Lys
TTT
[ENA]
¢þ
>WENV181842822
OGVT01024890
[OGVT] freshwater metagenome; freshwater
267
194
-
Lys
TTT
[ENA]
¢þ
>WENV181842823
OGVT01024890
[OGVT] freshwater metagenome; freshwater
165
92
-
Lys
TTT
[ENA]
¢þ
>WENV182579837
OJGU01000054
[OJGU] seawater metagenome; Sea water
198
125
-
Lys
TTT
[ENA]
¢þ
>WENV182581175
OJGX01000518
[OJGX] seawater metagenome; Sea water
1573
1500
-
Lys
TTT
[ENA]
¢þ
>WENV183062291
OLID01001884
[OLID] seawater metagenome; Sea water
458
385
-
Lys
TTT
[ENA]
¢þ
>WENV183717237
PDWJ01000617
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
36610
36537
-
Lys
TTT
[ENA]
¢þ
>WENV183717239
PDWJ01000617
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
36401
36328
-
Lys
TTT
[ENA]
¢þ
>WENV183729715
PJTR01000029
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
22076
22149
+
Lys
TTT
[ENA]
¢þ
>WENV183729716
PJTR01000029
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
22182
22255
+
Lys
TTT
[ENA]
¢þ
>WENV183729718
PJTR01000029
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
23545
23618
+
Lys
TTT
[ENA]
¢þ
>WENV170246535
CEQP01236384
[CEQP] marine metagenome genome assembly TARA_076_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
411
336
-
Lys
TTT
[ENA]
¢þ
>WENV170536326
CEWP01169066
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2054
2127
+
Lys
TTT
[ENA]
¢þ
>WENV170639166
JFJP01001236
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
32114
32041
-
Lys
TTT
[ENA]
¢þ
>WENV170639167
JFJP01001236
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
32012
31937
-
Lys
TTT
[ENA]
¢þ
>W141702905
JMLU01000026
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
24641
24716
+
Lys
TTT
[ENA]
¡û
>W141702906
JMLU01000026
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
24743
24818
+
Lys
TTT
[ENA]
¡û
>W1910184594
BJSV01000055
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
41893
41966
+
Lys
TTT
[ENA]
¡û
>W1910184595
BJSV01000055
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
41992
42065
+
Lys
TTT
[ENA]
¡û
>W1910184928
BJTE01000046
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
5572
5499
-
Lys
TTT
[ENA]
¡û
>W1910184929
BJTE01000046
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
5473
5400
-
Lys
TTT
[ENA]
¡û
>W1910184966
BJTF01000057
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
41893
41966
+
Lys
TTT
[ENA]
¡û
>W1910184967
BJTF01000057
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
41992
42065
+
Lys
TTT
[ENA]
¡û
>W1910503000
FYBZ01000001
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
84258
84185
-
Lys
TTT
[ENA]
¡û
>W1910503001
FYBZ01000001
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
84159
84086
-
Lys
TTT
[ENA]
¡û
>W1910503038
FYCA01000001
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
161
88
-
Lys
TTT
[ENA]
¡û
>W1910503178
FYCE01000036
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
23766
23839
+
Lys
TTT
[ENA]
¡û
>W1910503215
FYCF01000030
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
45026
45099
+
Lys
TTT
[ENA]
¡û
>W1910503216
FYCF01000030
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
45125
45198
+
Lys
TTT
[ENA]
¡û
>W1910503230
FYCG01000002
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
44827
44900
+
Lys
TTT
[ENA]
¡û
>W1910503231
FYCG01000002
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
44926
44999
+
Lys
TTT
[ENA]
¡û
>W1910503288
FYCH01000033
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
61396
61323
-
Lys
TTT
[ENA]
¡û
>W1910503289
FYCH01000033
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
61297
61224
-
Lys
TTT
[ENA]
¡û
>W1910503567
FYCO01000029
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
47610
47683
+
Lys
TTT
[ENA]
¡û
>W1910503568
FYCO01000029
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
47709
47782
+
Lys
TTT
[ENA]
¡û
>W1910503845
FYCY01000002
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
61395
61322
-
Lys
TTT
[ENA]
¡û
>W1910503846
FYCY01000002
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
61296
61223
-
Lys
TTT
[ENA]
¡û
>W1910503958
FYDB01000010
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
20754
20681
-
Lys
TTT
[ENA]
¡û
>W1910503988
FYDC01000001
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
37521
37594
+
Lys
TTT
[ENA]
¡û
>W1910503989
FYDC01000001
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
37620
37693
+
Lys
TTT
[ENA]
¡û
>W1910809511
MUHE01000037
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
5571
5498
-
Lys
TTT
[ENA]
¡û
>W1910809512
MUHE01000037
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
5472
5399
-
Lys
TTT
[ENA]
¡û
>W1810694850
QLMI01000001
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
143516
143443
-
Lys
TTT
[ENA]
¡û
>W1810694851
QLMI01000001
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
143414
143341
-
Lys
TTT
[ENA]
¡û
>C151030337
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
2107769
2107844
+
Lys
TTT
[Ensembl]
¡û
>C151030338
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
2107868
2107943
+
Lys
TTT
[Ensembl]
¡û
>C151038966
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
1496672
1496747
+
Lys
TTT
[Ensembl]
¡û
>C151038967
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
1496771
1496846
+
Lys
TTT
[Ensembl]
¡û
>C151039531
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
1482131
1482206
+
Lys
TTT
[Ensembl]
¡û
>C151039532
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
1482230
1482305
+
Lys
TTT
[Ensembl]
¡û
>W1511357157
JRWA01000007
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
325645
325720
+
Lys
TTT
[ENA]
¡û
>W1511357158
JRWA01000007
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
325744
325819
+
Lys
TTT
[ENA]
¡û
>W1511357270
JRWD01000023
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
78270
78195
-
Lys
TTT
[ENA]
¡û
>W1511357271
JRWD01000023
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
78171
78096
-
Lys
TTT
[ENA]
¡û
>W1511564721
LADZ01000006
Bacteroidota
Flavobacteriales bacterium BRH_c54 [LADZ]
16861
16934
+
Lys
TTT
[ENA]
¡û
>C161042848
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
3526029
3525954
-
Lys
TTT
-
¡û
>C161042849
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
3525922
3525847
-
Lys
TTT
-
¡û
>WENV056600
AACY023260683
Marine microbial communities from Global Ocean Sampling (GOS)
248
171
-
Lys
TTT
[ENA]
>W1610062207
BCNG01000107
Bacteroidota
Flavobacterium psychrophilum [BCNG]
357
282
-
Lys
TTT
[ENA]
¡û
>W1610062208
BCNG01000107
Bacteroidota
Flavobacterium psychrophilum [BCNG]
260
185
-
Lys
TTT
[ENA]
¡û
>W1610535190
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
98298
98223
-
Lys
TTT
[ENA]
¡û
>W1610535191
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
98192
98117
-
Lys
TTT
[ENA]
¡û
>W1610764400
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
45446
45521
+
Lys
TTT
[ENA]
¡û
>W1610764401
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
45545
45620
+
Lys
TTT
[ENA]
¡û
>W1610772946
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
5725
5650
-
Lys
TTT
[ENA]
¡û
>W1610772947
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
5626
5551
-
Lys
TTT
[ENA]
¡û
>WENV078042
AAFY01011788
Fossil microbial community from Whale Fall (Santa Cruz Basin)
358
283
-
Lys
TTT
[ENA]
>W1710059748
BCNG01000107
Bacteroidota
Flavobacterium psychrophilum [BCNG]
357
282
-
Lys
TTT
[ENA]
¡û
>W1710059749
BCNG01000107
Bacteroidota
Flavobacterium psychrophilum [BCNG]
260
185
-
Lys
TTT
[ENA]
¡û
>W1710593822
FRYK01000002
Bacteroidota
Flavobacterium cucumis [FRYK]
105827
105902
+
Lys
TTT
[ENA]
¡û
>W1710593823
FRYK01000002
Bacteroidota
Flavobacterium cucumis [FRYK]
105928
106003
+
Lys
TTT
[ENA]
¡û
>W1710637426
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
98298
98223
-
Lys
TTT
[ENA]
¡û
>W1710637427
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
98192
98117
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK