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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302210 (74 seq.)
>W1710861349
LMDN01000007
Actinomycetota
Leifsonia sp. Root4 [LMDN]
39420
39495
+
Arg
TCT
[ENA]
¡û
>W1710863971
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
638576
638501
-
Arg
TCT
[ENA]
¡û
>W1710869671
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
650065
650140
+
Arg
TCT
[ENA]
¡û
>W1710871359
LMLG01000004
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
20979
21054
+
Arg
TCT
[ENA]
¡û
>W1710874621
LMNT01000003
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
345088
345015
-
Arg
TCT
[ENA]
¡û
>W1711074796
LSJW01000020
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
13837
13912
+
Arg
TCT
[ENA]
¡û
>W131179542
ARMM01000003
Actinomycetota
Gulosibacter faecalis ATCC 13722 [ARMM]
173089
173014
-
Arg
TCT
[ENA]
¡û
>W1711173336
LWCU01000012
Actinomycetota
Microbacterium sp. H83 [LWCU]
18972
19045
+
Arg
TCT
[ENA]
¡û
>W131184617
ARTB01000001
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
372771
372846
+
Arg
TCT
[ENA]
¡û
>W131218460
ATXT01000011
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
594268
594193
-
Arg
TCT
[ENA]
¡û
>W131098959
AOSO01000004
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
582232
582157
-
Arg
TCT
[ENA]
¡û
>WENV180017045
FSWJ01000767
[FSWJ] metagenome; soil
20370
20297
-
Arg
TCT
[ENA]
¢þ
>WENV180017055
FSWJ01000976
[FSWJ] metagenome; soil
2200
2273
+
Arg
TCT
[ENA]
¢þ
>WENV180023871
FTIF01002608
[FTIF] metagenome; soil
575
648
+
Arg
TCT
[ENA]
¢þ
>WENV180024168
FTIF01111573
[FTIF] metagenome; soil
120
47
-
Arg
TCT
[ENA]
¢þ
>W141075428
ATAO01000206
Actinomycetota
Microbacterium liquefaciens MF109 [ATAO]
166655
166728
+
Arg
TCT
[ENA]
¡û
>W141188403
AYMR01000009
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
595998
595923
-
Arg
TCT
[ENA]
¡û
>W141289400
JARC01000025
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
279044
279117
+
Arg
TCT
[ENA]
¡û
>W141289489
JARE01000047
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
257510
257585
+
Arg
TCT
[ENA]
¡û
>C181143948
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1833898
1833825
-
Arg
TCT
-
¡û
>C181143988
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
1729341
1729268
-
Arg
TCT
-
¡û
>C181200424
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
1699397
1699472
+
Arg
TCT
-
¡û
>C191182571
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3714564
3714491
-
Arg
TCT
-
¡û
>C191185964
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
1683118
1683193
+
Arg
TCT
-
¡û
>W141766578
JOEB01000002
Actinomycetota
Mycetocola saprophilus [JOEB]
47344
47269
-
Arg
TCT
[ENA]
¡û
>W141766639
JOEC01000002
Actinomycetota
Mycetocola saprophilus [JOEC]
1394827
1394902
+
Arg
TCT
[ENA]
¡û
>W141767694
JOET01000171
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOET]
529
454
-
Arg
TCT
[ENA]
¡û
>W1910183336
BJNQ01000003
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
159644
159719
+
Arg
TCT
[ENA]
¡û
>W1910184033
BJOG01000004
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
621482
621407
-
Arg
TCT
[ENA]
¡û
>W1910211987
FMIR01000019
Actinomycetota
Microbacterium oxydans [FMIR]
100014
100088
+
Arg
TCT
[ENA]
¡û
>W1910377783
FUKR01000036
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
188327
188401
+
Arg
TCT
[ENA]
¡û
>C141007897
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
1490759
1490834
+
Arg
TCT
[Ensembl]
¡û
>W1910784620
MPZN01000032
Actinomycetota
Microterricola pindariensis PON 10 [MPZN]
33669
33743
+
Arg
TCT
[ENA]
¡û
>W1911566437
PCOV01000001
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
624787
624861
+
Arg
TCT
[ENA]
¡û
>W1911671557
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
625458
625531
+
Arg
TCT
[ENA]
¡û
>W1810091043
PGGU01000005
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
276279
276352
+
Arg
TCT
[ENA]
¡û
>W1810167300
PJIJ01000002
Actinomycetota
Arthrobacter sp. ZGTC212 [PJIJ]
1078763
1078690
-
Arg
TCT
[ENA]
¡û
>W1810167727
PJIS01000002
Actinomycetota
Arthrobacter sp. 9E06 [PJIS]
139724
139797
+
Arg
TCT
[ENA]
¡û
>W1810167778
PJIT01000002
Actinomycetota
Arthrobacter sp. 9E18 [PJIT]
139724
139797
+
Arg
TCT
[ENA]
¡û
>W1810167829
PJIU01000002
Actinomycetota
Arthrobacter sp. 9E16 [PJIU]
139724
139797
+
Arg
TCT
[ENA]
¡û
>W1810277893
PSUG01000002
Actinomycetota
Rathayibacter sp. AY2B3 [PSUG]
27892
27967
+
Arg
TCT
[ENA]
¡û
>W1810278570
PSUV01000018
Actinomycetota
Rathayibacter sp. AY1H2 [PSUV]
69107
69032
-
Arg
TCT
[ENA]
¡û
>W1810278598
PSUW01000009
Actinomycetota
Rathayibacter sp. AY1G9 [PSUW]
56310
56385
+
Arg
TCT
[ENA]
¡û
>W1810278747
PSUZ01000031
Actinomycetota
Rathayibacter sp. AY1G1 [PSUZ]
12050
12125
+
Arg
TCT
[ENA]
¡û
>W1810278768
PSVA01000006
Actinomycetota
Rathayibacter sp. AY1F9 [PSVA]
84487
84562
+
Arg
TCT
[ENA]
¡û
>W1810278901
PSVD01000007
Actinomycetota
Rathayibacter sp. AY1F6 [PSVD]
84623
84698
+
Arg
TCT
[ENA]
¡û
>W1810278991
PSVF01000017
Actinomycetota
Rathayibacter sp. AY1F3 [PSVF]
10010
10085
+
Arg
TCT
[ENA]
¡û
>W1810279126
PSVI01000029
Actinomycetota
Rathayibacter sp. AY1E8 [PSVI]
35978
35903
-
Arg
TCT
[ENA]
¡û
>W1810279209
PSVK01000012
Actinomycetota
Rathayibacter sp. AY1E6 [PSVK]
68934
68859
-
Arg
TCT
[ENA]
¡û
>W1810279458
PSVQ01000012
Actinomycetota
Rathayibacter sp. AY1D9 [PSVQ]
68995
68920
-
Arg
TCT
[ENA]
¡û
>W1810279625
PSVU01000015
Actinomycetota
Rathayibacter sp. AY1D5 [PSVU]
12216
12291
+
Arg
TCT
[ENA]
¡û
>W1810279679
PSVV01000016
Actinomycetota
Rathayibacter sp. AY1D4 [PSVV]
69083
69008
-
Arg
TCT
[ENA]
¡û
>W1810279718
PSVW01000006
Actinomycetota
Rathayibacter sp. AY1D3 [PSVW]
69090
69015
-
Arg
TCT
[ENA]
¡û
>W1810280067
PSWE01000016
Actinomycetota
Rathayibacter sp. AY1C4 [PSWE]
11942
12017
+
Arg
TCT
[ENA]
¡û
>W1810280128
PSWG01000001
Actinomycetota
Rathayibacter sp. AY1C2 [PSWG]
84632
84707
+
Arg
TCT
[ENA]
¡û
>W1810280431
PSWN01000001
Actinomycetota
Rathayibacter sp. AY1B4 [PSWN]
180599
180674
+
Arg
TCT
[ENA]
¡û
>W1810280632
PSWR01000107
Actinomycetota
Rathayibacter sp. TRS19 [PSWR]
10033
10108
+
Arg
TCT
[ENA]
¡û
>W1810568855
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
710875
710802
-
Arg
TCT
[ENA]
¡û
>W1810569033
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
516672
516599
-
Arg
TCT
[ENA]
¡û
>C151075155
CP011005
Actinomycetota
Psychromicrobium lacuslunae IHBB 11108 [CP011005]
1272049
1272122
+
Arg
TCT
[Ensembl]
¡û
>W1511348046
JRKC01000056
Actinomycetota
Microbacterium sp. ZOR0019 [JRKC]
10134
10061
-
Arg
TCT
[ENA]
¡û
>W1511528735
JYIU01000046
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
220446
220371
-
Arg
TCT
[ENA]
¡û
>W1511528773
JYIV01000030
Actinomycetota
Microbacterium oxydans BEL163 [JYIV]
383257
383330
+
Arg
TCT
[ENA]
¡û
>W1511588859
LBCR01000024
Actinomycetota
Microbacterium sp. Ag1 [LBCR]
64337
64262
-
Arg
TCT
[ENA]
¡û
>W1610723695
LMDN01000007
Actinomycetota
Leifsonia sp. Root4 [LMDN]
39420
39495
+
Arg
TCT
[ENA]
¡û
>W1610726317
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
638576
638501
-
Arg
TCT
[ENA]
¡û
>W1610732017
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
650065
650140
+
Arg
TCT
[ENA]
¡û
>W1610733705
LMLG01000004
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
20979
21054
+
Arg
TCT
[ENA]
¡û
>W1610736967
LMNT01000003
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
345088
345015
-
Arg
TCT
[ENA]
¡û
>W1610914101
LSJW01000020
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
13837
13912
+
Arg
TCT
[ENA]
¡û
>W1610981941
LWCU01000012
Actinomycetota
Microbacterium sp. H83 [LWCU]
18972
19045
+
Arg
TCT
[ENA]
¡û
>W1710535596
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
2120371
2120296
-
Arg
TCT
[ENA]
¡û
>W1710568283
FOTM01000014
Actinomycetota
Leifsonia sp. CL147 [FOTM]
33348
33421
+
Arg
TCT
[ENA]
¡û
>W1710604017
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
1425447
1425372
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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