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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302234 (21 seq.)
>W131215992
ATVL01000010
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
100141
100067
-
Arg
ACG
[ENA]
¡û
>W1711377561
MDZA01000288
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
15247
15323
+
Arg
ACG
[ENA]
¡û
>W1711377594
MDZB01000092
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
49936
49860
-
Arg
ACG
[ENA]
¡û
>W1711377633
MDZC01000047
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
54426
54502
+
Arg
ACG
[ENA]
¡û
>WENV181315134
OFJN01000353
[OFJN] marine metagenome; sea ice
434
508
+
Arg
ACG
[ENA]
¢þ
>WENV181315204
OFJN01009203
[OFJN] marine metagenome; sea ice
2
76
+
Arg
ACG
[ENA]
¢þ
>WENV170998891
MWWJ01150107
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
359
283
-
Arg
ACG
[ENA]
¢þ
>C181175086
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
2640373
2640447
+
Arg
ACG
-
¡û
>C191183814
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
3054268
3054194
-
Arg
ACG
-
¡û
>W141734726
JNLX01000149
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
46869
46793
-
Arg
ACG
[ENA]
¡û
>SRA1004050
SRR002328.116314
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
41
117
+
Arg
ACG
[SRA]
>C151009429
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2896229
2896153
-
Arg
ACG
[Ensembl]
¡û
>C151017360
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
3773112
3773186
+
Arg
ACG
[Ensembl]
¡û
>C151063994
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3417539
3417615
+
Arg
ACG
[Ensembl]
¡û
>C151096231
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
413899
413823
-
Arg
ACG
-
¡û
>W1511582942
LATM01000007
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
215032
215108
+
Arg
ACG
[ENA]
¡û
>C161061570
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
2317149
2317073
-
Arg
ACG
[Ensembl]
¡û
>C161070724
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
3884531
3884607
+
Arg
ACG
[Ensembl]
¡û
>W1710573752
FOXS01000005
Bacteroidota
Hymenobacter arizonensis [FOXS]
449242
449166
-
Arg
ACG
[ENA]
¡û
>W1710587454
FQYN01000002
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
313113
313187
+
Arg
ACG
[ENA]
¡û
>W1710610167
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
439847
439923
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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