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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302291 (135 seq.)
>W1710923948
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31235
31310
+
Phe
GAA
[ENA]
¡û
>W1710923950
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31468
31543
+
Phe
GAA
[ENA]
¡û
>W1710923952
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31680
31755
+
Phe
GAA
[ENA]
¡û
>W1710923954
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31885
31960
+
Phe
GAA
[ENA]
¡û
>W1711027043
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
621947
621872
-
Phe
GAA
[ENA]
¡û
>W1711027084
LRDC01000025
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
44531
44456
-
Phe
GAA
[ENA]
¡û
>W131179788
ARMR01000039
Gammaproteobacteria
Moritella marina ATCC 15381 [ARMR]
90054
89979
-
Phe
GAA
[ENA]
¡û
>W131179800
ARMR01000045
Gammaproteobacteria
Moritella marina ATCC 15381 [ARMR]
108717
108792
+
Phe
GAA
[ENA]
¡û
>W1711934383
NAJR01000001
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
654375
654300
-
Phe
GAA
[ENA]
¡û
>W1711934429
NAJR01000007
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
189398
189473
+
Phe
GAA
[ENA]
¡û
>W1711934431
NAJR01000007
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
190020
190095
+
Phe
GAA
[ENA]
¡û
>W1712080464
NGZL01000058
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
22185
22260
+
Phe
GAA
[ENA]
¡û
>W1712080476
NGZL01000082
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
7880
7955
+
Phe
GAA
[ENA]
¡û
>C171108589
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
3974182
3974257
+
Phe
GAA
-
¡û
>C171108646
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1536574
1536499
-
Phe
GAA
-
¡û
>C171108648
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1536009
1535934
-
Phe
GAA
-
¡û
>C022456
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
3653802
3653877
+
Phe
GAA
[Ensembl]
¡û
>C022501
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1457911
1457836
-
Phe
GAA
[Ensembl]
¡û
>C022503
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1457296
1457221
-
Phe
GAA
[Ensembl]
¡û
>C022955
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3513641
3513716
+
Phe
GAA
[Ensembl]
¡û
>C022957
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3514336
3514411
+
Phe
GAA
[Ensembl]
¡û
>C022959
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3748013
3748088
+
Phe
GAA
[Ensembl]
¡û
>C023263
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3130097
3130172
+
Phe
GAA
[Ensembl]
¡û
>C023265
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3130779
3130854
+
Phe
GAA
[Ensembl]
¡û
>C023325
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
1134242
1134167
-
Phe
GAA
[Ensembl]
¡û
>w027920
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101061
100984
-
Phe
GAA
[ENA]
¡û
>w027918
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101266
101189
-
Phe
GAA
[ENA]
¡û
>w027916
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101478
101401
-
Phe
GAA
[ENA]
¡û
>w027914
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101711
101634
-
Phe
GAA
[ENA]
¡û
>WENV182590636
OJIJ01000971
[OJIJ] seawater metagenome; Sea water
2307
2232
-
Phe
GAA
[ENA]
¢þ
>W141277720
JAEU01000013
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
250210
250285
+
Phe
GAA
[ENA]
¡û
>WENV170014359
AYRE01006535
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
212
137
-
Phe
GAA
[ENA]
¢þ
>WENV170022125
BCQK01000354
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1778
1703
-
Phe
GAA
[ENA]
¢þ
>WENV170022751
BCQK01044556
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
307
232
-
Phe
GAA
[ENA]
¢þ
>C181074988
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
574526
574601
+
Phe
GAA
-
¡û
>C181075078
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3373009
3372934
-
Phe
GAA
-
¡û
>C181075080
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3371977
3371902
-
Phe
GAA
-
¡û
>C181167966
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
1477810
1477735
-
Phe
GAA
-
¡û
>C181167968
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
1477071
1476996
-
Phe
GAA
-
¡û
>C181167971
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
1165875
1165800
-
Phe
GAA
-
¡û
>C181204209
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3469023
3468948
-
Phe
GAA
-
¡û
>C181204211
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3468791
3468716
-
Phe
GAA
-
¡û
>C181204213
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3468588
3468513
-
Phe
GAA
-
¡û
>C181204215
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3468385
3468310
-
Phe
GAA
-
¡û
>C191117218
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
3827125
3827200
+
Phe
GAA
-
¡û
>C191117221
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4205058
4205133
+
Phe
GAA
-
¡û
>C191148688
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
881498
881573
+
Phe
GAA
-
¡û
>C191148690
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
890975
891050
+
Phe
GAA
-
¡û
>C191148750
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
3269563
3269488
-
Phe
GAA
-
¡û
>C191155896
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
3127359
3127434
+
Phe
GAA
-
¡û
>C191155951
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
1123764
1123689
-
Phe
GAA
-
¡û
>C191155953
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
1123542
1123467
-
Phe
GAA
-
¡û
>W09104322
AALN01000067
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
468
543
+
Phe
GAA
[ENA]
¡û
>W09104324
AALN01000067
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
1150
1225
+
Phe
GAA
[ENA]
¡û
>W09104331
AALN01000096
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
10596
10521
-
Phe
GAA
[ENA]
¡û
>W09104595
AALX01000029
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
20193
20268
+
Phe
GAA
[ENA]
¡û
>W1910237505
FPLD01000065
Gammaproteobacteria
Moritella viscosa [FPLD]
101991
102066
+
Phe
GAA
[ENA]
¡û
>W1910237507
FPLD01000065
Gammaproteobacteria
Moritella viscosa [FPLD]
102224
102299
+
Phe
GAA
[ENA]
¡û
>W1910237584
FPLE01000073
Gammaproteobacteria
Moritella viscosa [FPLE]
82552
82627
+
Phe
GAA
[ENA]
¡û
>W1910237586
FPLE01000073
Gammaproteobacteria
Moritella viscosa [FPLE]
82785
82860
+
Phe
GAA
[ENA]
¡û
>W1910237663
FPLF01000076
Gammaproteobacteria
Moritella viscosa [FPLF]
100335
100410
+
Phe
GAA
[ENA]
¡û
>W1910237665
FPLF01000076
Gammaproteobacteria
Moritella viscosa [FPLF]
100568
100643
+
Phe
GAA
[ENA]
¡û
>W1910237905
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
159616
159691
+
Phe
GAA
[ENA]
¡û
>W1910237907
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
159849
159924
+
Phe
GAA
[ENA]
¡û
>W1910237909
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
160061
160136
+
Phe
GAA
[ENA]
¡û
>W1910237911
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
160266
160341
+
Phe
GAA
[ENA]
¡û
>W1910282729
FRDQ01000069
Gammaproteobacteria
Moritella viscosa [FRDQ]
14526
14601
+
Phe
GAA
[ENA]
¡û
>W1910282731
FRDQ01000069
Gammaproteobacteria
Moritella viscosa [FRDQ]
14759
14834
+
Phe
GAA
[ENA]
¡û
>W1910282733
FRDQ01000069
Gammaproteobacteria
Moritella viscosa [FRDQ]
14971
15046
+
Phe
GAA
[ENA]
¡û
>W1910282875
FRDS01000083
Gammaproteobacteria
Moritella viscosa [FRDS]
14525
14600
+
Phe
GAA
[ENA]
¡û
>W1910282877
FRDS01000083
Gammaproteobacteria
Moritella viscosa [FRDS]
14758
14833
+
Phe
GAA
[ENA]
¡û
>W1910282879
FRDS01000083
Gammaproteobacteria
Moritella viscosa [FRDS]
14970
15045
+
Phe
GAA
[ENA]
¡û
>W1910282946
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
14525
14600
+
Phe
GAA
[ENA]
¡û
>W1910282948
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
14758
14833
+
Phe
GAA
[ENA]
¡û
>W1910282950
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
14970
15045
+
Phe
GAA
[ENA]
¡û
>W1910282952
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
15175
15250
+
Phe
GAA
[ENA]
¡û
>W1910283031
FRDU01000083
Gammaproteobacteria
Moritella viscosa [FRDU]
14640
14715
+
Phe
GAA
[ENA]
¡û
>W1910283033
FRDU01000083
Gammaproteobacteria
Moritella viscosa [FRDU]
14873
14948
+
Phe
GAA
[ENA]
¡û
>W1910283103
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99265
99340
+
Phe
GAA
[ENA]
¡û
>W1910283105
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99498
99573
+
Phe
GAA
[ENA]
¡û
>W1910283107
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99710
99785
+
Phe
GAA
[ENA]
¡û
>W1910283109
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99915
99990
+
Phe
GAA
[ENA]
¡û
>W1910283184
FRDW01000046
Gammaproteobacteria
Moritella viscosa [FRDW]
148048
148123
+
Phe
GAA
[ENA]
¡û
>W1910283186
FRDW01000046
Gammaproteobacteria
Moritella viscosa [FRDW]
148281
148356
+
Phe
GAA
[ENA]
¡û
>W1910283188
FRDW01000046
Gammaproteobacteria
Moritella viscosa [FRDW]
148493
148568
+
Phe
GAA
[ENA]
¡û
>W1910676966
MCTY01000208
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
724
649
-
Phe
GAA
[ENA]
¡û
>W1910676968
MCTY01000208
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
469
394
-
Phe
GAA
[ENA]
¡û
>W1910676977
MCTY01000234
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
8043
7968
-
Phe
GAA
[ENA]
¡û
>W1910679515
MCVG01000130
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
7015
7090
+
Phe
GAA
[ENA]
¡û
>W1910679532
MCVG01000173
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
36724
36799
+
Phe
GAA
[ENA]
¡û
>W1910679534
MCVG01000173
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
36979
37054
+
Phe
GAA
[ENA]
¡û
>W1911809477
QYYH01000049
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
27349
27274
-
Phe
GAA
[ENA]
¡û
>W1911809502
QYYH01000118
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
3733
3658
-
Phe
GAA
[ENA]
¡û
>W1911809504
QYYH01000118
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
3536
3461
-
Phe
GAA
[ENA]
¡û
>W1810073345
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
100570
100645
+
Phe
GAA
[ENA]
¡û
>W1810073347
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
100761
100836
+
Phe
GAA
[ENA]
¡û
>W1810073349
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
101385
101460
+
Phe
GAA
[ENA]
¡û
>W1810073351
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
101599
101674
+
Phe
GAA
[ENA]
¡û
>W1810073413
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
2493184
2493109
-
Phe
GAA
[ENA]
¡û
>W1810422989
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2259329
2259404
+
Phe
GAA
[ENA]
¡û
>W1810422991
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2260600
2260675
+
Phe
GAA
[ENA]
¡û
>W1810423034
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
377534
377459
-
Phe
GAA
[ENA]
¡û
>W1810721548
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
270741
270666
-
Phe
GAA
[ENA]
¡û
>W1810721550
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
269855
269780
-
Phe
GAA
[ENA]
¡û
>W1810721562
QNSC01000005
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
343851
343776
-
Phe
GAA
[ENA]
¡û
>C151103122
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718243
4718318
+
Phe
GAA
[Ensembl]
¡û
>C151103124
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718476
4718551
+
Phe
GAA
[Ensembl]
¡û
>C151103126
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718688
4718763
+
Phe
GAA
[Ensembl]
¡û
>C151103128
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718893
4718968
+
Phe
GAA
[Ensembl]
¡û
>W10126043
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
268965
269040
+
Phe
GAA
[ENA]
¡û
>W10126045
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
269946
270021
+
Phe
GAA
[ENA]
¡û
>W10126065
AECY01000004
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
7650
7725
+
Phe
GAA
[ENA]
¡û
>W1511366803
JSFF01000016
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
106720
106645
-
Phe
GAA
[ENA]
¡û
>W1511366825
JSFF01000033
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
19508
19433
-
Phe
GAA
[ENA]
¡û
>W11133304
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
268965
269040
+
Phe
GAA
[ENA]
¡û
>W11133306
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
269946
270021
+
Phe
GAA
[ENA]
¡û
>W11133326
AECY01000004
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
7650
7725
+
Phe
GAA
[ENA]
¡û
>W1610072103
BCUO01000019
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
7546
7621
+
Phe
GAA
[ENA]
¡û
>W1610072117
BCUO01000035
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
14597
14522
-
Phe
GAA
[ENA]
¡û
>W1610072119
BCUO01000035
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
13914
13839
-
Phe
GAA
[ENA]
¡û
>W1610460510
FKJK01000001
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
1435237
1435312
+
Phe
GAA
[ENA]
¡û
>W1610460569
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
167682
167757
+
Phe
GAA
[ENA]
¡û
>W1610460612
FKJK01000009
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
183842
183767
-
Phe
GAA
[ENA]
¡û
>W1610781549
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31235
31310
+
Phe
GAA
[ENA]
¡û
>W1610781551
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31468
31543
+
Phe
GAA
[ENA]
¡û
>W1610781553
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31680
31755
+
Phe
GAA
[ENA]
¡û
>W1610781555
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31885
31960
+
Phe
GAA
[ENA]
¡û
>W1610875155
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
621947
621872
-
Phe
GAA
[ENA]
¡û
>W1610875196
LRDC01000025
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
44531
44456
-
Phe
GAA
[ENA]
¡û
>W1710069305
BCUO01000019
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
7546
7621
+
Phe
GAA
[ENA]
¡û
>W1710069319
BCUO01000035
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
14597
14522
-
Phe
GAA
[ENA]
¡û
>W1710069321
BCUO01000035
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
13914
13839
-
Phe
GAA
[ENA]
¡û
>W1710460074
FKJK01000001
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
1435237
1435312
+
Phe
GAA
[ENA]
¡û
>W1710460133
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
167682
167757
+
Phe
GAA
[ENA]
¡û
>W1710460176
FKJK01000009
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
183842
183767
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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