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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30278 (7 seq.)
>WENV180319455
OBKN01001542
[OBKN] human gut metagenome; human gut
7270
7361
+
Ser
CGA
[ENA]
¡û
>WENV181349573
OFMO01000136
[OFMO] human gut metagenome; human gut
465
556
+
Ser
CGA
[ENA]
¡û
>WENV181890762
OGXO01001111
[OGXO] human gut metagenome; faeces
8050
8141
+
Ser
CGA
[ENA]
¡û
>WENV181903678
OGXX01002209
[OGXX] human gut metagenome; faeces
1492
1401
-
Ser
CGA
[ENA]
¡û
>WENV181994678
OHAT01000024
[OHAT] human gut metagenome; faeces
72406
72497
+
Ser
CGA
[ENA]
¡û
>WENV183116378
OLNR01000025
[OLNR] human gut metagenome; faeces
131263
131354
+
Ser
CGA
[ENA]
¡û
>WENV183246421
OLRF01000123
[OLRF] human gut metagenome; faeces
7053
6962
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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