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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302964 (65 seq.)
>W1711385108
MEDS01000010
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
73556
73481
-
Asn
GTT
[ENA]
¡û
>W1711385109
MEDS01000010
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
73438
73363
-
Asn
GTT
[ENA]
¡û
>W1711386857
MEFV01000013
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
6000
5925
-
Asn
GTT
[ENA]
¡û
>W1711502140
MKSJ01000225
Betaproteobacteria
Burkholderiales bacterium 66-5 [MKSJ]
559
484
-
Asn
GTT
[ENA]
¡û
>W1711502141
MKSJ01000225
Betaproteobacteria
Burkholderiales bacterium 66-5 [MKSJ]
440
365
-
Asn
GTT
[ENA]
¡û
>C171094232
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
1240224
1240299
+
Asn
GTT
-
¡û
>C171094942
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2414362
2414287
-
Asn
GTT
-
¡û
>C171094947
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
1570428
1570353
-
Asn
GTT
-
¡û
>W131070389
ANSG01000005
Betaproteobacteria
Neisseria meningitidis 77221 [ANSG]
60032
60107
+
Asn
GTT
[ENA]
¡û
>W131120100
APSI01000026
Betaproteobacteria
Neisseria meningitidis 2000080 [APSI]
20007
20082
+
Asn
GTT
[ENA]
¡û
>C000367
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
2435001
2435076
+
Asn
GTT
[Ensembl]
¡û
>WENV180591709
OCOV01082563
[OCOV] marine metagenome; ENVO:01000301
143
218
+
Asn
GTT
[ENA]
¢þ
>WENV180851436
ODKV01072510
[ODKV] human metagenome; G_DNA_Stool
428
353
-
Asn
GTT
[ENA]
¢þ
>WENV181104590
OEED01000005
[OEED] human metagenome; G_DNA_Tongue dorsum
5090
5165
+
Asn
GTT
[ENA]
¢þ
>WENV181308046
OFIS01000154
[OFIS] sludge metagenome; sludge
57357
57432
+
Asn
GTT
[ENA]
¢þ
>WENV181378650
OFRB01043297
[OFRB] wastewater metagenome; Exp Tend CN 0WW
126
201
+
Asn
GTT
[ENA]
¢þ
>WENV181379059
OFRC01014102
[OFRC] wastewater metagenome; Exp Tend CN 10WW
361
436
+
Asn
GTT
[ENA]
¢þ
>WENV181412105
OGCI01082469
[OGCI] hot springs metagenome; Hot spring water
121
196
+
Asn
GTT
[ENA]
¢þ
>W141169072
AXVM01000016
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
10171
10246
+
Asn
GTT
[ENA]
¡û
>W141169073
AXVM01000016
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
10290
10365
+
Asn
GTT
[ENA]
¡û
>WENV181973063
OHAA01009588
[OHAA] human gut metagenome; faeces
548
623
+
Asn
GTT
[ENA]
¢þ
>WENV182610196
OJJV01064097
[OJJV] metagenome; faeces
431
356
-
Asn
GTT
[ENA]
¢þ
>WENV183365880
OLXN01072694
[OLXN] human gut metagenome; feces
39
114
+
Asn
GTT
[ENA]
¢þ
>WENV183584411
OOCQ01015055
[OOCQ] human gut metagenome; human gut
31
106
+
Asn
GTT
[ENA]
¢þ
>C181018985
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
1376779
1376854
+
Asn
GTT
-
¡û
>C181199260
CP031329
Betaproteobacteria
Neisseria meningitidis M22425 [CP031329]
1303928
1303853
-
Asn
GTT
-
¡û
>W09117952
ACCM01000007
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
218025
218100
+
Asn
GTT
[ENA]
¡û
>W09119241
ACDQ01000009
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
29361
29286
-
Asn
GTT
[ENA]
¡û
>C09104077
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
1664907
1664832
-
Asn
GTT
[Ensembl]
¡û
>W1911415830
NWXW01000015
Betaproteobacteria
Neisseria meningitidis INS-Nm1043 [NWXW]
26303
26378
+
Asn
GTT
[ENA]
¡û
>W1911415906
NWXY01000003
Betaproteobacteria
Neisseria meningitidis INS-Nm1036 [NWXY]
20661
20736
+
Asn
GTT
[ENA]
¡û
>W1911416025
NWYA01000005
Betaproteobacteria
Neisseria meningitidis INS-Nm1032 [NWYA]
533
458
-
Asn
GTT
[ENA]
¡û
>W1911416138
NWYC01000017
Betaproteobacteria
Neisseria meningitidis INS-Nm1027 [NWYC]
8706
8631
-
Asn
GTT
[ENA]
¡û
>W1911416293
NWYF01000031
Betaproteobacteria
Neisseria meningitidis INS-Nm997 [NWYF]
20901
20976
+
Asn
GTT
[ENA]
¡û
>W1911416345
NWYG01000034
Betaproteobacteria
Neisseria meningitidis INS-Nm996 [NWYG]
1454
1379
-
Asn
GTT
[ENA]
¡û
>W1911416414
NWYI01000004
Betaproteobacteria
Neisseria meningitidis INS-Nm994 [NWYI]
1454
1379
-
Asn
GTT
[ENA]
¡û
>W1911416649
NWYM01000023
Betaproteobacteria
Neisseria meningitidis INS-Nm988 [NWYM]
737
662
-
Asn
GTT
[ENA]
¡û
>W1911417059
NWYU01000019
Betaproteobacteria
Neisseria meningitidis INS-Nm1136 [NWYU]
41241
41316
+
Asn
GTT
[ENA]
¡û
>W1911417424
NWZB01000025
Betaproteobacteria
Neisseria meningitidis INS-Nm1087 [NWZB]
20628
20703
+
Asn
GTT
[ENA]
¡û
>W1911417476
NWZC01000027
Betaproteobacteria
Neisseria meningitidis INS-Nm1078 [NWZC]
24576
24651
+
Asn
GTT
[ENA]
¡û
>W1911417572
NWZE01000017
Betaproteobacteria
Neisseria meningitidis INS-Nm1066 [NWZE]
42823
42898
+
Asn
GTT
[ENA]
¡û
>W1911417661
NWZG01000009
Betaproteobacteria
Neisseria meningitidis INS-Nm1057 [NWZG]
8706
8631
-
Asn
GTT
[ENA]
¡û
>W1911417726
NWZH01000036
Betaproteobacteria
Neisseria meningitidis INS-Nm1053 [NWZH]
19470
19545
+
Asn
GTT
[ENA]
¡û
>W1911417811
NWZJ01000007
Betaproteobacteria
Neisseria meningitidis INS-Nm1044 [NWZJ]
533
458
-
Asn
GTT
[ENA]
¡û
>W1911418016
NWZN01000006
Betaproteobacteria
Neisseria meningitidis INS-Nm1033 [NWZN]
65631
65706
+
Asn
GTT
[ENA]
¡û
>W1911418183
NWZQ01000014
Betaproteobacteria
Neisseria meningitidis INS-Nm1021 [NWZQ]
1454
1379
-
Asn
GTT
[ENA]
¡û
>W1911418381
NWZU01000014
Betaproteobacteria
Neisseria meningitidis INS-Nm1017 [NWZU]
43694
43769
+
Asn
GTT
[ENA]
¡û
>W1911418734
NXAB01000031
Betaproteobacteria
Neisseria meningitidis INS-Nm1006 [NXAB]
20901
20976
+
Asn
GTT
[ENA]
¡û
>W1911418786
NXAC01000036
Betaproteobacteria
Neisseria meningitidis INS-Nm1005 [NXAC]
20129
20204
+
Asn
GTT
[ENA]
¡û
>W1911473211
OAAA01000031
Betaproteobacteria
Neisseria meningitidis [OAAA]
19979
20054
+
Asn
GTT
[ENA]
¡û
>W1911479062
OAEI01000025
Betaproteobacteria
Neisseria meningitidis Neisseria meningitidis [OAEI]
19982
20057
+
Asn
GTT
[ENA]
¡û
>W1810659721
QJKI01000002
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
113278
113353
+
Asn
GTT
[ENA]
¡û
>W1810659730
QJKI01000004
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
113237
113312
+
Asn
GTT
[ENA]
¡û
>W1810764865
QQCI01000020
Betaproteobacteria
Neisseria meningitidis M29418 [QQCI]
41450
41525
+
Asn
GTT
[ENA]
¡û
>W1810765795
QQDA01000024
Betaproteobacteria
Neisseria meningitidis M29266 [QQDA]
28874
28949
+
Asn
GTT
[ENA]
¡û
>C11116108
CP001561
Betaproteobacteria
Neisseria meningitidis alpha710 [CP001561]
503445
503520
+
Asn
GTT
[Ensembl]
¡û
>W1511390754
JSYI01000045
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
183
108
-
Asn
GTT
[ENA]
¡û
>W1610042833
BAZJ01000087
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
4983
5058
+
Asn
GTT
[ENA]
¡û
>W1610277653
FEVY01000018
Betaproteobacteria
Neisseria meningitidis [FEVY]
1443
1368
-
Asn
GTT
[ENA]
¡û
>W1610287543
FFDK01000003
Betaproteobacteria
Neisseria meningitidis [FFDK]
21539
21614
+
Asn
GTT
[ENA]
¡û
>W1710039993
BAZJ01000087
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
4983
5058
+
Asn
GTT
[ENA]
¡û
>W1710278287
FEVY01000018
Betaproteobacteria
Neisseria meningitidis [FEVY]
1443
1368
-
Asn
GTT
[ENA]
¡û
>W1710288177
FFDK01000003
Betaproteobacteria
Neisseria meningitidis [FFDK]
21539
21614
+
Asn
GTT
[ENA]
¡û
>W1710583658
FQUZ01000008
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
3626
3701
+
Asn
GTT
[ENA]
¡û
>W1710583659
FQUZ01000008
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
3758
3833
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK