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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30306 (53 seq.)
>W1711622189
MPDW01000219
Bacillota
Clostridioides difficile [MPDW]
16
103
+
Leu
TAA
[ENA]
¡û
>W1712037081
NFHY01000015
Bacillota
Drancourtella sp. An57 [NFHY]
46639
46727
+
Leu
TAA
[ENA]
¡û
>W1712039479
NFJS01000020
Bacillota
Drancourtella sp. An210 [NFJS]
17562
17476
-
Leu
TAA
[ENA]
¡û
>W1712039492
NFJS01000028
Bacillota
Drancourtella sp. An210 [NFJS]
33420
33332
-
Leu
TAA
[ENA]
¡û
>W1712040676
NFKN01000005
Bacillota
Drancourtella sp. An177 [NFKN]
675
763
+
Leu
TAA
[ENA]
¡û
>W1712040704
NFKN01000030
Bacillota
Drancourtella sp. An177 [NFKN]
17699
17785
+
Leu
TAA
[ENA]
¡û
>W1712042204
NFLO01000015
Bacillota
Drancourtella sp. An12 [NFLO]
29582
29494
-
Leu
TAA
[ENA]
¡û
>C007126
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
3141417
3141506
+
Leu
TAA
[Ensembl]
¡û
>WENV180163356
OAVH01006090
[OAVH] human gut metagenome; faeces
1922
1833
-
Leu
TAA
[ENA]
¡û
>WENV180243860
OBDJ01167860
[OBDJ] human gut metagenome; human gut
167
80
-
Leu
TAA
[ENA]
¡û
>WENV180514849
OCHB01018949
[OCHB] human gut metagenome; human gut
222
311
+
Leu
TAA
[ENA]
¡û
>WENV180540688
OCHQ01117774
[OCHQ] human gut metagenome; human gut
57
145
+
Leu
TAA
[ENA]
¡û
>WENV181464568
OGEP01001496
[OGEP] metagenome; Human gut stool
25031
24944
-
Leu
TAA
[ENA]
¡û
>WENV181509546
OGGQ01006461
[OGGQ] metagenome; Human gut stool
7642
7554
-
Leu
TAA
[ENA]
¡û
>WENV181541349
OGIC01018535
[OGIC] metagenome; Human gut stool
175
263
+
Leu
TAA
[ENA]
¡û
>WENV181557750
OGIW01000105
[OGIW] metagenome; Human gut stool
101216
101128
-
Leu
TAA
[ENA]
¡û
>WENV181711269
OGPO01026280
[OGPO] human gut metagenome; faeces
172
259
+
Leu
TAA
[ENA]
¡û
>W141233358
BAVR01000005
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
7624
7535
-
Leu
TAA
[ENA]
¡û
>W141251499
CBQO010000108
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
83008
83097
+
Leu
TAA
[ENA]
¡û
>WENV182798565
OJTK01001196
[OJTK] human gut metagenome; human gut
418
507
+
Leu
TAA
[ENA]
¡û
>WENV183064476
OLIH01009718
[OLIH] metagenome; faeces
386
474
+
Leu
TAA
[ENA]
¡û
>WENV183460061
OMDO01019977
[OMDO] human gut metagenome; feces
689
601
-
Leu
TAA
[ENA]
¡û
>WENV183562964
OOBW01006158
[OOBW] human gut metagenome; human gut
374
462
+
Leu
TAA
[ENA]
¡û
>WENV170005474
AMCI01005374
[AMCI] gut metagenome; fecal sample from gut
549
638
+
Leu
TAA
[ENA]
¡û
>W09100433
AABG04000002
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
140926
141015
+
Leu
TAA
[ENA]
¡û
>W09135633
ACVX01000001
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
176413
176324
-
Leu
TAA
[ENA]
¡û
>W141703390
JMMB01000011
Bacillota
Peptostreptococcaceae bacterium VA2 [JMMB]
15856
15767
-
Leu
TAA
[ENA]
¡û
>W141703397
JMMB01000011
Bacillota
Peptostreptococcaceae bacterium VA2 [JMMB]
14040
13951
-
Leu
TAA
[ENA]
¡û
>W1911496665
OCMV01000002
Bacillota
Hungateiclostridium thermocellum LQRI [OCMV]
180743
180654
-
Leu
TAA
[ENA]
¡û
>W2010279243
CABMFO010000017
Bacillota
Ruminococcaceae bacterium [CABMFO]
39302
39214
-
Leu
TAA
[ENA]
¡û
>W2011157569
OCMV01000002
Bacillota
Hungateiclostridium thermocellum LQRI [OCMV]
180743
180654
-
Leu
TAA
[ENA]
¡û
>W2011182725
PDBW01000001
Bacillota
Ruminiclostridium thermocellum AD2 [PDBW]
271898
271987
+
Leu
TAA
[ENA]
¡û
>W2011530307
SBHL01000002
Bacillota
Hungateiclostridium thermocellum PAL5 [SBHL]
251046
251135
+
Leu
TAA
[ENA]
¡û
>W2011560515
SGJB01000009
Bacillota
Peptacetobacter hominis ZHW00191 [SGJB]
100624
100713
+
Leu
TAA
[ENA]
¡û
>W2011560539
SGJB01000030
Bacillota
Peptacetobacter hominis ZHW00191 [SGJB]
610
523
-
Leu
TAA
[ENA]
¡û
>W2011669866
SPHM01000027
Bacillota
Pseudoflavonifractor sp. BSD2780061688st1 E11 BSD2780061688st1_E11 [SPHM]
12196
12108
-
Leu
TAA
[ENA]
¡û
>W2110098910
CAJFER010000036
Bacillota
Drancourtella sp. An57 [CAJFER]
17196
17285
+
Leu
TAA
[ENA]
¡û
>W2110223092
JACJKH010000016
Bacillota
Drancourtella massiliensis An770 [JACJKH]
28813
28725
-
Leu
TAA
[ENA]
¡û
>C211233241
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
16172
16261
+
Leu
TAA
-
¡û
>C211233244
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
44413
44500
+
Leu
TAA
-
¡û
>C211233266
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
46392
46479
+
Leu
TAA
-
¡û
>C211233290
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
149151
149240
+
Leu
TAA
-
¡û
>C231486228
CP104195
Bacillota
Acetivibrio thermocellus M3 [CP104195]
270160
270249
+
Leu
TAA
-
¡û
>W2110773332
VIRV01000013
Bacillota
Sellimonas caecigallum SW451 [VIRV]
17608
17522
-
Leu
TAA
[ENA]
¡û
>W2110773340
VIRV01000022
Bacillota
Sellimonas caecigallum SW451 [VIRV]
31327
31239
-
Leu
TAA
[ENA]
¡û
>C241044922
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
2518796
2518707
-
Leu
TAA
-
¡û
>C241044932
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
123135
123046
-
Leu
TAA
-
¡û
>C241044935
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
96373
96286
-
Leu
TAA
-
¡û
>C241044957
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
94388
94301
-
Leu
TAA
-
¡û
>W2310020338
BSBO01000004
Bacillota
Sellimonas catena 12EGH17 [BSBO]
28066
27978
-
Leu
TAA
[ENA]
¡û
>C161097517
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
271721
271810
+
Leu
TAA
-
¡û
>W121061370
AJGT01000047
Bacillota
Acetivibrio thermocellus YS [AJGT]
225147
225058
-
Leu
TAA
[ENA]
¡û
>W1730033056
MPDU01000093
Bacillota
Clostridioides difficile [MPDU]
25
112
+
Sup
TTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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