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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30323 (19 seq.)
>WENV170684556
LFRM01045695
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
14948
15038
+
Ser
GCT
[ENA]
¢þ
>WENV170721698
LSQX01201010
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3672
3582
-
Ser
GCT
[ENA]
¢þ
>WENV170725651
LSQX01350985
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
192
102
-
Ser
GCT
[ENA]
¢þ
>WENV170726353
LSQX01376536
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2374
2464
+
Ser
GCT
[ENA]
¢þ
>W141462355
JFHS01000002
Gammaproteobacteria
Halopseudomonas bauzanensis [JFHS]
144825
144735
-
Ser
GCT
[ENA]
¡û
>W1911568284
PCQD01000007
Gammaproteobacteria
Pseudomonas sp. MYb185 [PCQD]
90821
90911
+
Ser
GCT
[ENA]
¡û
>C151093948
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
889491
889401
-
Ser
GCT
-
¡û
>C151094000
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
810522
810432
-
Ser
GCT
-
¡û
>C151094038
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
2100230
2100140
-
Ser
GCT
-
¡û
>C151094104
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
448240
448150
-
Ser
GCT
-
¡û
>C151094113
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
223569
223659
+
Ser
GCT
-
¡û
>C151094206
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
551611
551521
-
Ser
GCT
-
¡û
>C151094260
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
444370
444280
-
Ser
GCT
-
¡û
>C161041394
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
483381
483291
-
Ser
GCT
[Ensembl]
¡û
>W1610607221
LFTS01000037
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
14948
15038
+
Ser
GCT
[ENA]
¡û
>W1710551995
FOGN01000005
Gammaproteobacteria
Halopseudomonas bauzanensis [FOGN]
165191
165281
+
Ser
GCT
[ENA]
¡û
>W1710569012
FOUA01000005
Gammaproteobacteria
Halopseudomonas bauzanensis [FOUA]
137756
137666
-
Ser
GCT
[ENA]
¡û
>W1710574265
FOYD01000003
Gammaproteobacteria
Halopseudomonas formosensis [FOYD]
96524
96434
-
Ser
GCT
[ENA]
¡û
>W1710728508
LFTS01000037
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
14948
15038
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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