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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30344 (125 seq.)
>W1711006443
LQOJ01000019
Actinomycetota
Mycolicibacterium fallax [LQOJ]
5440
5530
+
Ser
CGA
[ENA]
¡û
>W1711006955
LQOT01000044
Actinomycetota
Mycolicibacter engbaekii [LQOT]
21372
21462
+
Ser
CGA
[ENA]
¡û
>W1711007236
LQOZ01000032
Actinomycetota
Mycolicibacter hiberniae [LQOZ]
78354
78444
+
Ser
CGA
[ENA]
¡û
>W1711007578
LQPG01000027
Actinomycetota
Mycolicibacter longobardus longobardum [LQPG]
104883
104793
-
Ser
CGA
[ENA]
¡û
>W1711007684
LQPI01000090
Actinomycetota
Mycolicibacter nonchromogenicus nonchromogenicum [LQPI]
27002
26912
-
Ser
CGA
[ENA]
¡û
>W1711008349
LQPX01000013
Actinomycetota
Mycolicibacter terrae [LQPX]
60908
60818
-
Ser
CGA
[ENA]
¡û
>W1711075009
LSKA01000380
Actinomycetota
Mycolicibacterium mucogenicum [LSKA]
12336
12246
-
Ser
CGA
[ENA]
¡û
>W1711075465
LSKL01000089
Actinomycetota
Mycolicibacterium mucogenicum [LSKL]
43716
43806
+
Ser
CGA
[ENA]
¡û
>W1711276590
LZIG01000166
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
30798
30708
-
Ser
CGA
[ENA]
¡û
>W1711277290
LZIU01000202
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZIU]
69809
69719
-
Ser
CGA
[ENA]
¡û
>W1711278047
LZJK01000156
Actinomycetota
Mycolicibacter sinensis sinense [LZJK]
1156
1246
+
Ser
CGA
[ENA]
¡û
>W1711278812
LZKB01000077
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZKB]
18147
18237
+
Ser
CGA
[ENA]
¡û
>W1711279058
LZKG01000083
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
43413
43503
+
Ser
CGA
[ENA]
¡û
>W1711280075
LZLB01000066
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZLB]
3767
3857
+
Ser
CGA
[ENA]
¡û
>W1711280126
LZLC01000178
Actinomycetota
Mycolicibacterium mucogenicum [LZLC]
6584
6674
+
Ser
CGA
[ENA]
¡û
>W1711281432
LZME01000065
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZME]
55925
55835
-
Ser
CGA
[ENA]
¡û
>W1711281730
LZMK01000276
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
30670
30580
-
Ser
CGA
[ENA]
¡û
>W1711281760
LZML01000068
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
13514
13604
+
Ser
CGA
[ENA]
¡û
>W1711285330
LZSF01000052
Actinomycetota
Mycolicibacterium mucogenicum [LZSF]
14033
13943
-
Ser
CGA
[ENA]
¡û
>W1711285852
LZSP01000124
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
7491
7401
-
Ser
CGA
[ENA]
¡û
>W1711325455
MBEL01000149
Actinomycetota
Mycolicibacter heraklionensis heraklionense [MBEL]
168
78
-
Ser
CGA
[ENA]
¡û
>W131087243
AOCJ01000103
Actinomycetota
Mycolicibacterium smegmatis MKD8 [AOCJ]
43736
43646
-
Ser
CGA
[ENA]
¡û
>W131185058
ARTK01000022
Actinomycetota
Mycobacterium sp. 360MFTsu5.1 [ARTK]
77721
77631
-
Ser
CGA
[ENA]
¡û
>W1711772313
MVHH01000015
Actinomycetota
Mycolicibacter arupensis arupense [MVHH]
29021
29111
+
Ser
CGA
[ENA]
¡û
>W1711772949
MVHU01000030
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [MVHU]
649
559
-
Ser
CGA
[ENA]
¡û
>W1711773166
MVHZ01000008
Actinomycetota
Mycolicibacter minnesotensis minnesotense [MVHZ]
83238
83328
+
Ser
CGA
[ENA]
¡û
>W1711773269
MVIB01000020
Actinomycetota
Mycolicibacterium moriokaense [MVIB]
109300
109210
-
Ser
CGA
[ENA]
¡û
>C014039
CP000480
Actinomycetota
Mycolicibacterium smegmatis MC2 155 [CP000480]
6393912
6393822
-
Ser
CGA
[Ensembl]
¡û
>WENV180031935
FTJU01001749
[FTJU] metagenome; soil
2706
2616
-
Ser
CGA
[ENA]
¢þ
>W141089997
AUWR01000052
Actinomycetota
Mycobacterium sp. UM_WGJ [AUWR]
23061
23151
+
Ser
CGA
[ENA]
¡û
>W141262028
CCBF010000001
Actinomycetota
Mycolicibacterium mageritense [CCBF]
2693139
2693229
+
Ser
CGA
[ENA]
¡û
>W141283012
JAJD01000106
Actinomycetota
Mycolicibacterium smegmatis MC2 51 [JAJD]
43746
43656
-
Ser
CGA
[ENA]
¡û
>C181155703
CP027541
Actinomycetota
Mycolicibacterium smegmatis MKD8 [CP027541]
6525015
6524925
-
Ser
CGA
-
¡û
>C181226033
LT906469
Actinomycetota
Mycolicibacter terrae NCTC10856 [LT906469]
4206401
4206311
-
Ser
CGA
-
¡û
>C191208017
LR134345
Actinomycetota
Mycobacteroides chelonae NCTC946 [LR134345]
268488
268578
+
Ser
CGA
-
¡û
>W141702421
JMLM01000003
Actinomycetota
Mycobacterium sp. UNC410CL29Cvi84 [JMLM]
272183
272093
-
Ser
CGA
[ENA]
¡û
>W141774696
JOJF01000017
Actinomycetota
Nocardia sp. NRRL WC-3656 [JOJF]
218056
218146
+
Ser
CGA
[ENA]
¡û
>W141817544
JQKU01000011
Actinomycetota
Mycobacterium sp. UNC280MFTsu5.1 [JQKU]
194155
194245
+
Ser
CGA
[ENA]
¡û
>W1910002614
ATDQ01000068
Actinomycetota
Mycolicibacterium brumae DSM 44177 [ATDQ]
34337
34247
-
Ser
CGA
[ENA]
¡û
>W1910319290
FSCO01000104
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 800 [FSCO]
25447
25357
-
Ser
CGA
[ENA]
¡û
>W1910897051
NGAF01000002
Actinomycetota
Nocardia cerradoensis CNM20130759 [NGAF]
761108
761198
+
Ser
CGA
[ENA]
¡û
>W1810052595
PDCN02000005
Actinomycetota
Mycolicibacterium brumae CIP1034565 [PDCN]
34029
33939
-
Ser
CGA
[ENA]
¡û
>W1810052691
PDCP01000016
Actinomycetota
Mycolicibacterium agri CCUG37673 [PDCP]
105078
104988
-
Ser
CGA
[ENA]
¡û
>W1810069144
PEBB01000077
Actinomycetota
Mycolicibacterium goodii ST0139456 [PEBB]
37677
37587
-
Ser
CGA
[ENA]
¡û
>W1810282365
PSYZ01000011
Actinomycetota
Nocardia nova ATCC 10905 [PSYZ]
111795
111885
+
Ser
CGA
[ENA]
¡û
>W1810282393
PSZA01000003
Actinomycetota
Nocardia nova MDA5529 [PSZA]
13666
13756
+
Ser
CGA
[ENA]
¡û
>W1810282484
PSZB01000045
Actinomycetota
Nocardia nova MDA3397 [PSZB]
12141
12051
-
Ser
CGA
[ENA]
¡û
>W1810282491
PSZC01000001
Actinomycetota
Nocardia nova MDA3139 [PSZC]
46801
46891
+
Ser
CGA
[ENA]
¡û
>W1810282545
PSZD01000001
Actinomycetota
Nocardia nova BAA2227 [PSZD]
534340
534430
+
Ser
CGA
[ENA]
¡û
>W1810282607
PSZE01000009
Actinomycetota
Nocardia nova MDA0897 [PSZE]
46801
46891
+
Ser
CGA
[ENA]
¡û
>W1810326054
PUEV01000066
Actinomycetota
Mycolicibacter virginiensis GF75 [PUEV]
24336
24246
-
Ser
CGA
[ENA]
¡û
>W1810402897
PYHS01000001
Actinomycetota
Nocardia nova ATCC 33727 [PYHS]
116841
116931
+
Ser
CGA
[ENA]
¡û
>W1810402990
PYHT01000037
Actinomycetota
Nocardia sp. MDA0666 [PYHT]
31057
30967
-
Ser
CGA
[ENA]
¡û
>W1810763463
QQBC01000005
Actinomycetota
Nocardia pseudobrasiliensis DSM 44290 [QQBC]
95645
95735
+
Ser
CGA
[ENA]
¡û
>C151013324
CP006850
Actinomycetota
Nocardia nova SH22a [CP006850]
243259
243349
+
Ser
CGA
[Ensembl]
¡û
>C151052883
CP009494
Actinomycetota
Mycolicibacterium smegmatis MC2 155 [CP009494]
6393952
6393862
-
Ser
CGA
[Ensembl]
¡û
>C151052930
CP009495
Actinomycetota
Mycolicibacterium smegmatis INHR1 [CP009495]
6394023
6393933
-
Ser
CGA
[Ensembl]
¡û
>C151052977
CP009496
Actinomycetota
Mycolicibacterium smegmatis INHR2 [CP009496]
6393992
6393902
-
Ser
CGA
[Ensembl]
¡û
>C151091793
CP012150
Actinomycetota
Mycobacterium goodii X7B [CP012150]
820415
820325
-
Ser
CGA
-
¡û
>W1510755074
CYSI01000007
Actinomycetota
Mycolicibacterium mucogenicum CSUR P2099 [CYSI]
3486230
3486320
+
Ser
CGA
[ENA]
¡û
>W1511350516
JRMK01000013
Actinomycetota
Mycobacterium sp. UM_Kg1 [JRMK]
3293
3383
+
Ser
CGA
[ENA]
¡û
>W1511350585
JRML01000034
Actinomycetota
Mycobacterium sp. UM_Kg17 [JRML]
27045
27135
+
Ser
CGA
[ENA]
¡û
>W1511350635
JRMM01000126
Actinomycetota
Mycobacterium sp. UM_Kg27 [JRMM]
11942
12032
+
Ser
CGA
[ENA]
¡û
>W1511350651
JRMN01000003
Actinomycetota
Mycobacterium sp. UM_NZ2 [JRMN]
20420
20510
+
Ser
CGA
[ENA]
¡û
>W1511511192
JXST01000022
Actinomycetota
Mycolicibacterium llatzerense CLUC14 [JXST]
61935
61845
-
Ser
CGA
[ENA]
¡û
>W1511582410
LASW02000049
Actinomycetota
Mycolicibacter arupensis GUC1 [LASW]
2029
1939
-
Ser
CGA
[ENA]
¡û
>W1511639867
LDPO01000037
Actinomycetota
Mycolicibacter heraklionensis Davo [LDPO]
1687
1597
-
Ser
CGA
[ENA]
¡û
>C121001631
CP001663
Actinomycetota
Mycolicibacterium smegmatis MC2 155 [CP001663]
6395521
6395431
-
Ser
CGA
-
¡û
>C161072388
CP014475
Actinomycetota
Mycolicibacterium phlei CCUG 21000 [CP014475]
268486
268576
+
Ser
CGA
-
¡û
>C161106296
LN831039
Actinomycetota
Mycolicibacterium smegmatis NCTC8159 [LN831039]
6411392
6411302
-
Ser
CGA
[Ensembl]
¡û
>W121007821
AGAQ01000375
Actinomycetota
Mycobacterium avium subsp. avium Env 77 [AGAQ]
4381
4471
+
Ser
CGA
[ENA]
¡û
>W121060247
AJFJ01000066
Actinomycetota
Mycolicibacterium phlei RIVM601174 [AJFJ]
9861
9771
-
Ser
CGA
[ENA]
¡û
>W121124918
BAFQ01000007
Actinomycetota
Nocardia aobensis NBRC 100429 [BAFQ]
17254
17344
+
Ser
CGA
[ENA]
¡û
>W121125206
BAFW01000002
Actinomycetota
Nocardia cerradoensis NBRC 101014 [BAFW]
125358
125448
+
Ser
CGA
[ENA]
¡û
>W121126050
BAGM01000006
Actinomycetota
Nocardia veterana NBRC 100344 [BAGM]
15575
15665
+
Ser
CGA
[ENA]
¡û
>W1610011473
ANBO01000012
Actinomycetota
Mycolicibacterium phlei DSM 43239 = CCUG 21000 [ANBO]
29756
29666
-
Ser
CGA
[ENA]
¡û
>W1610021346
ATDR01000001
Actinomycetota
Mycolicibacterium phlei DSM 43072 [ATDR]
29688
29598
-
Ser
CGA
[ENA]
¡û
>W1610021390
ATHW01000002
Actinomycetota
Mycolicibacterium phlei DSM 43070 [ATHW]
29870
29780
-
Ser
CGA
[ENA]
¡û
>W1610057461
BBXO01000173
Actinomycetota
Nocardia pseudobrasiliensis [BBXO]
12291
12381
+
Ser
CGA
[ENA]
¡û
>W1610068686
BCRN01000008
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
16975
17065
+
Ser
CGA
[ENA]
¡û
>W1610078367
BDAV01000012
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
162078
161988
-
Ser
CGA
[ENA]
¡û
>W1610078854
BDBF01000004
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
76895
76985
+
Ser
CGA
[ENA]
¡û
>W1610079175
BDBL01000002
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
328811
328721
-
Ser
CGA
[ENA]
¡û
>W1610079275
BDBN01000009
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
8102
8192
+
Ser
CGA
[ENA]
¡û
>W1610079542
BDBS01000024
Actinomycetota
Nocardia pseudobrasiliensis NBRC 108224 [BDBS]
95549
95639
+
Ser
CGA
[ENA]
¡û
>W1610080590
BDCM01000003
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
693006
692916
-
Ser
CGA
[ENA]
¡û
>W1610080640
BDCN01000005
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
78510
78420
-
Ser
CGA
[ENA]
¡û
>W1610435321
FJNX01000022
Actinomycetota
Mycolicibacterium brumae [FJNX]
34662
34572
-
Ser
CGA
[ENA]
¡û
>W1610437198
FJVP01000039
Actinomycetota
Mycolicibacter icosiumassiliensis 8WA6 [FJVP]
13938
13848
-
Ser
CGA
[ENA]
¡û
>W1610526833
JPUH01000006
Actinomycetota
Mycolicibacterium phlei DSM 43071 [JPUH]
29882
29792
-
Ser
CGA
[ENA]
¡û
>W1610601095
LFOE01000041
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
25442
25532
+
Ser
CGA
[ENA]
¡û
>W1610914314
LSKA01000380
Actinomycetota
Mycolicibacterium mucogenicum [LSKA]
12336
12246
-
Ser
CGA
[ENA]
¡û
>W1610914770
LSKL01000089
Actinomycetota
Mycolicibacterium mucogenicum [LSKL]
43716
43806
+
Ser
CGA
[ENA]
¡û
>W1611035875
LZIG01000166
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
30798
30708
-
Ser
CGA
[ENA]
¡û
>W1611036575
LZIU01000202
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZIU]
69809
69719
-
Ser
CGA
[ENA]
¡û
>W1611037332
LZJK01000156
Actinomycetota
Mycolicibacter sinensis sinense [LZJK]
1156
1246
+
Ser
CGA
[ENA]
¡û
>W1611038097
LZKB01000077
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZKB]
18147
18237
+
Ser
CGA
[ENA]
¡û
>W1611038343
LZKG01000083
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
43413
43503
+
Ser
CGA
[ENA]
¡û
>W1611039360
LZLB01000066
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZLB]
3767
3857
+
Ser
CGA
[ENA]
¡û
>W1611039411
LZLC01000178
Actinomycetota
Mycolicibacterium mucogenicum [LZLC]
6584
6674
+
Ser
CGA
[ENA]
¡û
>W1611040717
LZME01000065
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZME]
55925
55835
-
Ser
CGA
[ENA]
¡û
>W1611041015
LZMK01000276
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
30670
30580
-
Ser
CGA
[ENA]
¡û
>W1611041045
LZML01000068
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
13514
13604
+
Ser
CGA
[ENA]
¡û
>W1611042891
LZSF01000052
Actinomycetota
Mycolicibacterium mucogenicum [LZSF]
14033
13943
-
Ser
CGA
[ENA]
¡û
>W1611043413
LZSP01000124
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
7491
7401
-
Ser
CGA
[ENA]
¡û
>W1710018041
ATDR01000001
Actinomycetota
Mycolicibacterium phlei DSM 43072 [ATDR]
29688
29598
-
Ser
CGA
[ENA]
¡û
>W1710018085
ATHW01000002
Actinomycetota
Mycolicibacterium phlei DSM 43070 [ATHW]
29870
29780
-
Ser
CGA
[ENA]
¡û
>W1710054160
BBXO01000173
Actinomycetota
Nocardia pseudobrasiliensis [BBXO]
12291
12381
+
Ser
CGA
[ENA]
¡û
>W1710066059
BCRN01000008
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
16975
17065
+
Ser
CGA
[ENA]
¡û
>W1710076926
BDAV01000012
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
162078
161988
-
Ser
CGA
[ENA]
¡û
>W1710077413
BDBF01000004
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
76895
76985
+
Ser
CGA
[ENA]
¡û
>W1710077734
BDBL01000002
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
328811
328721
-
Ser
CGA
[ENA]
¡û
>W1710077834
BDBN01000009
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
8102
8192
+
Ser
CGA
[ENA]
¡û
>W1710078101
BDBS01000024
Actinomycetota
Nocardia pseudobrasiliensis NBRC 108224 [BDBS]
95549
95639
+
Ser
CGA
[ENA]
¡û
>W1710079149
BDCM01000003
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
693006
692916
-
Ser
CGA
[ENA]
¡û
>W1710079199
BDCN01000005
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
78510
78420
-
Ser
CGA
[ENA]
¡û
>W1710435057
FJNX01000022
Actinomycetota
Mycolicibacterium brumae [FJNX]
34662
34572
-
Ser
CGA
[ENA]
¡û
>W1710436826
FJVP01000039
Actinomycetota
Mycolicibacter icosiumassiliensis 8WA6 [FJVP]
13938
13848
-
Ser
CGA
[ENA]
¡û
>W1710533410
FNRC01000004
Actinomycetota
Mycobacterium sp. 283mftsu [FNRC]
227318
227408
+
Ser
CGA
[ENA]
¡û
>W1710619858
JMHR01000167
Actinomycetota
Mycobacterium sp. SWH-M3 [JMHR]
2141
2051
-
Ser
CGA
[ENA]
¡û
>W1710619918
JMHS01000158
Actinomycetota
Mycobacterium sp. SWH-M5 [JMHS]
10395
10305
-
Ser
CGA
[ENA]
¡û
>W1710619941
JMHT01000027
Actinomycetota
Mycobacterium sp. ST-F2 [JMHT]
49741
49651
-
Ser
CGA
[ENA]
¡û
>W1710628387
JPUH01000006
Actinomycetota
Mycolicibacterium phlei DSM 43071 [JPUH]
29882
29792
-
Ser
CGA
[ENA]
¡û
>W1710722611
LFOE01000041
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
25442
25532
+
Ser
CGA
[ENA]
¡û
>W1710767049
LIPZ01000032
Actinomycetota
Mycolicibacterium llatzerense [LIPZ]
41997
42087
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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