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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303587 (118 seq.)
>W1711683751
MRYP01000063
Bacillota
Ligilactobacillus ruminis [MRYP]
415
489
+
Ala
TGC
[ENA]
¡û
>W1711683813
MRYQ01000049
Bacillota
Ligilactobacillus ruminis [MRYQ]
226
152
-
Ala
TGC
[ENA]
¡û
>WENV180119959
OASE01038160
[OASE] human gut metagenome; ENVO:feces
346
272
-
Ala
TGC
[ENA]
¡û
>WENV180277130
OBHV01076691
[OBHV] metagenome; water
208
135
-
Ala
TGC
[ENA]
¡û
>WENV180290577
OBIU01042945
[OBIU] human gut metagenome; human gut
154
80
-
Ala
TGC
[ENA]
¡û
>WENV180320364
OBKN01186625
[OBKN] human gut metagenome; human gut
150
76
-
Ala
TGC
[ENA]
¡û
>WENV180583843
OCNB01244136
[OCNB] metagenome; diffuse fluid
40
113
+
Ala
TGC
[ENA]
¡û
>WENV181235958
OFEY01009916
[OFEY] mouse gut metagenome; faeces
579
651
+
Ala
TGC
[ENA]
¡û
>WENV181248523
OFFL01007668
[OFFL] mouse gut metagenome; faeces
126
200
+
Ala
TGC
[ENA]
¡û
>WENV181254736
OFFR01042674
[OFFR] mouse gut metagenome; faeces
145
71
-
Ala
TGC
[ENA]
¡û
>WENV181258086
OFFU01032535
[OFFU] mouse gut metagenome; faeces
748
676
-
Ala
TGC
[ENA]
¡û
>WENV181272573
OFGG01025469
[OFGG] mouse gut metagenome; faeces
749
675
-
Ala
TGC
[ENA]
¡û
>WENV181273979
OFGH01024615
[OFGH] mouse gut metagenome; faeces
809
883
+
Ala
TGC
[ENA]
¡û
>WENV181283939
OFGQ01049681
[OFGQ] mouse gut metagenome; faeces
801
873
+
Ala
TGC
[ENA]
¡û
>WENV181285013
OFGR01021918
[OFGR] mouse gut metagenome; faeces
748
676
-
Ala
TGC
[ENA]
¡û
>WENV181303356
OFHP01008078
[OFHP] mouse gut metagenome; faeces
144
72
-
Ala
TGC
[ENA]
¡û
>WENV181356097
OFMT01027543
[OFMT] human gut metagenome; human gut
432
506
+
Ala
TGC
[ENA]
¡û
>WENV181473464
OGFB01006347
[OGFB] metagenome; Human gut stool
1389
1315
-
Ala
TGC
[ENA]
¡û
>WENV182362967
OICE01011348
[OICE] human gut metagenome; feces
51
125
+
Ala
TGC
[ENA]
¡û
>WENV182925297
OKUI01036481
[OKUI] human gut metagenome; feces
501
427
-
Ala
TGC
[ENA]
¡û
>WENV183047984
OLGF01031739
[OLGF] human gut metagenome; faeces
1249
1175
-
Ala
TGC
[ENA]
¡û
>WENV183723249
PDYJ01000822
[PDYJ] gut metagenome; fecal pellets
14754
14828
+
Ala
TGC
[ENA]
¡û
>WENV183723766
PDYJ01003118
[PDYJ] gut metagenome; fecal pellets
12427
12353
-
Ala
TGC
[ENA]
¡û
>WENV170571409
FLOH01000152
[FLOH] marine metagenome; water
132366
132293
-
Ala
TGC
[ENA]
¡û
>WENV170597867
FUWD010017214
[FUWD] metagenome; unknown
313
240
-
Ala
TGC
[ENA]
¡û
>WENV170605114
FUWD010450458
[FUWD] metagenome; unknown
127
200
+
Ala
TGC
[ENA]
¡û
>C181084707
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
116843
116917
+
Ala
TGC
-
¡û
>C181084717
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
2131732
2131806
+
Ala
TGC
-
¡û
>C181084727
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
1412003
1411929
-
Ala
TGC
-
¡û
>C181084774
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
834050
834124
+
Ala
TGC
-
¡û
>C181084783
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
923514
923588
+
Ala
TGC
-
¡û
>C181084827
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
2219748
2219674
-
Ala
TGC
-
¡û
>C191172056
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
306282
306356
+
Ala
TGC
-
¡û
>C191172065
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
412060
412134
+
Ala
TGC
-
¡û
>C191172110
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
1637413
1637339
-
Ala
TGC
-
¡û
>W141699191
JMHU01000024
Bacillota
Ligilactobacillus animalis [JMHU]
157
231
+
Ala
TGC
[ENA]
¡û
>W09123136
ACGS01000159
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
134
208
+
Ala
TGC
[ENA]
¡û
>W1910611634
LFJL01000027
Bacillota
Lactobacillus animalis 09-2317 [LFJL]
126
52
-
Ala
TGC
[ENA]
¡û
>W1910611638
LFJL01000031
Bacillota
Lactobacillus animalis 09-2317 [LFJL]
2
76
+
Ala
TGC
[ENA]
¡û
>W1910611639
LFJL01000034
Bacillota
Lactobacillus animalis 09-2317 [LFJL]
191
265
+
Ala
TGC
[ENA]
¡û
>W1910611644
LFJM01000003
Bacillota
Lactobacillus animalis 14-7927 [LFJM]
126
52
-
Ala
TGC
[ENA]
¡û
>W1910611701
LFJM01000041
Bacillota
Lactobacillus animalis 14-7927 [LFJM]
191
265
+
Ala
TGC
[ENA]
¡û
>W1910611702
LFJM01000042
Bacillota
Lactobacillus animalis 14-7927 [LFJM]
2
76
+
Ala
TGC
[ENA]
¡û
>W1911754062
QWMU01000188
Bacillota
Lactobacillus murinus 510-9 [QWMU]
704
632
-
Ala
TGC
[ENA]
¡û
>W2010246854
CABIVU020000136
Bacillota
Lactobacillus murinus [CABIVU]
412
486
+
Ala
TGC
[ENA]
¡û
>W2010252276
CABIZJ020000016
Bacillota
Lactobacillus animalis [CABIZJ]
3976
3902
-
Ala
TGC
[ENA]
¡û
>W2011322045
QWMU01000188
Bacillota
Lactobacillus murinus 510-9 [QWMU]
704
632
-
Ala
TGC
[ENA]
¡û
>W2011338590
QXXN01000188
Bacillota
Lactobacillus murinus 510-9 [QXXN]
704
632
-
Ala
TGC
[ENA]
¡û
>W2011686727
SRYL01000135
Bacillota
Lactobacillus murinus NM28_3M-8 [SRYL]
192
264
+
Ala
TGC
[ENA]
¡û
>W2012040891
VIQY01000106
Bacillota
Lactobacillus murinus MD040 [VIQY]
526
600
+
Ala
TGC
[ENA]
¡û
>W2012040893
VIQY01000107
Bacillota
Lactobacillus murinus MD040 [VIQY]
450
378
-
Ala
TGC
[ENA]
¡û
>W2012040894
VIQY01000116
Bacillota
Lactobacillus murinus MD040 [VIQY]
383
309
-
Ala
TGC
[ENA]
¡û
>W2012362924
WKNU01000002
Bacillota
Lactobacillus ruminis BIOML-A27 [WKNU]
1796
1870
+
Ala
TGC
[ENA]
¡û
>W2012363457
WKOC01000055
Bacillota
Lactobacillus ruminis BIOML-A19 [WKOC]
3347
3273
-
Ala
TGC
[ENA]
¡û
>W2012363521
WKOD01000057
Bacillota
Lactobacillus ruminis BIOML-A18 [WKOD]
3347
3273
-
Ala
TGC
[ENA]
¡û
>W2012363643
WKOF01000052
Bacillota
Lactobacillus ruminis BIOML-A16 [WKOF]
3347
3273
-
Ala
TGC
[ENA]
¡û
>W2012363877
WKOJ01000067
Bacillota
Lactobacillus ruminis BIOML-A12 [WKOJ]
3347
3273
-
Ala
TGC
[ENA]
¡û
>W2012364072
WKOM01000063
Bacillota
Lactobacillus ruminis BIOML-A9 [WKOM]
1697
1771
+
Ala
TGC
[ENA]
¡û
>W2012364074
WKOM01000067
Bacillota
Lactobacillus ruminis BIOML-A9 [WKOM]
1164
1090
-
Ala
TGC
[ENA]
¡û
>W2012364076
WKOM01000067
Bacillota
Lactobacillus ruminis BIOML-A9 [WKOM]
176
102
-
Ala
TGC
[ENA]
¡û
>W2012364218
WKOO01000059
Bacillota
Lactobacillus ruminis BIOML-A7 [WKOO]
4025
3951
-
Ala
TGC
[ENA]
¡û
>W2012364527
WKOT01000029
Bacillota
Lactobacillus ruminis BIOML-A1 [WKOT]
3346
3272
-
Ala
TGC
[ENA]
¡û
>W2110121932
CAJSZF010000006
Bacillota
Ligilactobacillus murinus [CAJSZF]
35057
35131
+
Ala
TGC
[ENA]
¡û
>W2110121992
CAJSZF010000118
Bacillota
Ligilactobacillus murinus [CAJSZF]
356
284
-
Ala
TGC
[ENA]
¡û
>W2110121993
CAJSZF010000126
Bacillota
Ligilactobacillus murinus [CAJSZF]
216
142
-
Ala
TGC
[ENA]
¡û
>W2110123175
CAJTAQ010000016
Bacillota
Ligilactobacillus murinus [CAJTAQ]
41537
41465
-
Ala
TGC
[ENA]
¡û
>W2110123231
CAJTAQ010000093
Bacillota
Ligilactobacillus murinus [CAJTAQ]
1420
1494
+
Ala
TGC
[ENA]
¡û
>W2110123232
CAJTAQ010000110
Bacillota
Ligilactobacillus murinus [CAJTAQ]
227
153
-
Ala
TGC
[ENA]
¡û
>W2110123628
CAJTBD010000022
Bacillota
Ligilactobacillus murinus [CAJTBD]
32220
32148
-
Ala
TGC
[ENA]
¡û
>W2110123638
CAJTBD010000027
Bacillota
Ligilactobacillus murinus [CAJTBD]
216
142
-
Ala
TGC
[ENA]
¡û
>W2110123663
CAJTBD010000109
Bacillota
Ligilactobacillus murinus [CAJTBD]
162
236
+
Ala
TGC
[ENA]
¡û
>W2110124084
CAJTBV010000020
Bacillota
Ligilactobacillus murinus [CAJTBV]
35057
35131
+
Ala
TGC
[ENA]
¡û
>W2110316487
JADGKI010000047
Bacillota
Ligilactobacillus murinus LAC.1 [JADGKI]
366
440
+
Ala
TGC
[ENA]
¡û
>W2110316526
JADGKI010000152
Bacillota
Ligilactobacillus murinus LAC.1 [JADGKI]
343
271
-
Ala
TGC
[ENA]
¡û
>W2110316528
JADGKI010000186
Bacillota
Ligilactobacillus murinus LAC.1 [JADGKI]
172
246
+
Ala
TGC
[ENA]
¡û
>W2110318554
JADGME010000134
Bacillota
Ligilactobacillus murinus 19428wF2_HT12 [JADGME]
225
299
+
Ala
TGC
[ENA]
¡û
>W2110318555
JADGME010000146
Bacillota
Ligilactobacillus murinus 19428wF2_HT12 [JADGME]
172
246
+
Ala
TGC
[ENA]
¡û
>C231450557
CP102284
Bacillota
Ligilactobacillus ruminis ATCC 25644 [CP102284]
275457
275531
+
Ala
TGC
-
¡û
>C231450575
CP102284
Bacillota
Ligilactobacillus ruminis ATCC 25644 [CP102284]
452669
452743
+
Ala
TGC
-
¡û
>C231450580
CP102284
Bacillota
Ligilactobacillus ruminis ATCC 25644 [CP102284]
819097
819171
+
Ala
TGC
-
¡û
>C231599795
CP117687
Bacillota
Ligilactobacillus ruminis CACC881 [CP117687]
1837158
1837084
-
Ala
TGC
-
¡û
>C231599812
CP117687
Bacillota
Ligilactobacillus ruminis CACC881 [CP117687]
1635352
1635278
-
Ala
TGC
-
¡û
>C231599816
CP117687
Bacillota
Ligilactobacillus ruminis CACC881 [CP117687]
1279007
1278933
-
Ala
TGC
-
¡û
>C231599947
CP117692
Bacillota
Ligilactobacillus ruminis CACC888 [CP117692]
1017439
1017513
+
Ala
TGC
-
¡û
>C231599964
CP117692
Bacillota
Ligilactobacillus ruminis CACC888 [CP117692]
1215582
1215656
+
Ala
TGC
-
¡û
>C231599968
CP117692
Bacillota
Ligilactobacillus ruminis CACC888 [CP117692]
1587678
1587752
+
Ala
TGC
-
¡û
>C241054051
CP040852
Bacillota
Ligilactobacillus murinus V10 [CP040852]
988843
988917
+
Ala
TGC
-
¡û
>C241054060
CP040852
Bacillota
Ligilactobacillus murinus V10 [CP040852]
1078789
1078863
+
Ala
TGC
-
¡û
>C241054104
CP040852
Bacillota
Ligilactobacillus murinus V10 [CP040852]
2609121
2609047
-
Ala
TGC
-
¡û
>C241116922
CP047141
Bacillota
Ligilactobacillus animalis P38 [CP047141]
258846
258920
+
Ala
TGC
-
¡û
>C241116931
CP047141
Bacillota
Ligilactobacillus animalis P38 [CP047141]
356922
356996
+
Ala
TGC
-
¡û
>C241116976
CP047141
Bacillota
Ligilactobacillus animalis P38 [CP047141]
1460622
1460548
-
Ala
TGC
-
¡û
>W2110797640
WQOD01000100
Bacillota
Ligilactobacillus ruminis MCC646 [WQOD]
77
3
-
Ala
TGC
[ENA]
¡û
>W2110797642
WQOD01000120
Bacillota
Ligilactobacillus ruminis MCC646 [WQOD]
212
286
+
Ala
TGC
[ENA]
¡û
>W2130009356
CAJTBV010000112
Bacillota
Ligilactobacillus murinus [CAJTBV]
246
318
+
Ala
TGC
[ENA]
¡û
>W2130009357
CAJTBV010000117
Bacillota
Ligilactobacillus murinus [CAJTBV]
162
236
+
Ala
TGC
[ENA]
¡û
>C241248734
CP123639
Bacillota
Ligilactobacillus faecis WILCCON 0062 [CP123639]
1147750
1147822
+
Ala
TGC
-
¡û
>C241248742
CP123639
Bacillota
Ligilactobacillus faecis WILCCON 0062 [CP123639]
1405957
1406031
+
Ala
TGC
-
¡û
>C241248754
CP123639
Bacillota
Ligilactobacillus faecis WILCCON 0062 [CP123639]
472970
472896
-
Ala
TGC
-
¡û
>C241249701
CP123751
Bacillota
Ligilactobacillus animalis ZSB1 [CP123751]
257167
257241
+
Ala
TGC
-
¡û
>C241249710
CP123751
Bacillota
Ligilactobacillus animalis ZSB1 [CP123751]
343024
343098
+
Ala
TGC
-
¡û
>C241249755
CP123751
Bacillota
Ligilactobacillus animalis ZSB1 [CP123751]
1463030
1462956
-
Ala
TGC
-
¡û
>C241287730
CP129339
Bacillota
Ligilactobacillus animalis SRCM217969 [CP129339]
469304
469378
+
Ala
TGC
-
¡û
>C241287738
CP129339
Bacillota
Ligilactobacillus animalis SRCM217969 [CP129339]
1653365
1653291
-
Ala
TGC
-
¡û
>C241287747
CP129339
Bacillota
Ligilactobacillus animalis SRCM217969 [CP129339]
1574827
1574753
-
Ala
TGC
-
¡û
>C241287884
CP129341
Bacillota
Ligilactobacillus ruminis SRCM218231 [CP129341]
1887283
1887209
-
Ala
TGC
-
¡û
>C241287901
CP129341
Bacillota
Ligilactobacillus ruminis SRCM218231 [CP129341]
1693673
1693599
-
Ala
TGC
-
¡û
>C241287905
CP129341
Bacillota
Ligilactobacillus ruminis SRCM218231 [CP129341]
1320254
1320180
-
Ala
TGC
-
¡û
>C241339769
CP137688
Bacillota
Ligilactobacillus murinus KD6 [CP137688]
489180
489254
+
Ala
TGC
-
¡û
>C241339778
CP137688
Bacillota
Ligilactobacillus murinus KD6 [CP137688]
590897
590971
+
Ala
TGC
-
¡û
>C241339824
CP137688
Bacillota
Ligilactobacillus murinus KD6 [CP137688]
1791752
1791678
-
Ala
TGC
-
¡û
>C121004200
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
276054
276128
+
Ala
TGC
[Ensembl]
¡û
>C121004217
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
450679
450753
+
Ala
TGC
[Ensembl]
¡û
>W1610031006
AYYL01000082
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
1517
1591
+
Ala
TGC
[ENA]
¡û
>WENV079554
AATF01000050
Gut microbiome of Mouse lean and obese (C57BL/6J)
224
301
+
Ala
TGC
[ENA]
>W1710027958
AYYL01000082
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
1517
1591
+
Ala
TGC
[ENA]
¡û
>W1710081624
BDFM01000218
Bacillota
Ligilactobacillus murinus [BDFM]
440
366
-
Ala
TGC
[ENA]
¡û
>W1710081632
BDFM01000291
Bacillota
Ligilactobacillus murinus [BDFM]
464
392
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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