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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304559 (8 seq.)
>W131215253
ATUV01000002
Campylobacterota
Hippea alviniae EP5-r [ATUV]
173982
173907
-
Ala
GGC
[ENA]
¡û
>W141278537
JAFP01000001
Campylobacterota
Hippea sp. KM1 [JAFP]
1693630
1693555
-
Ala
GGC
[ENA]
¡û
>WENV170621796
FUWD013073511
[FUWD] metagenome; unknown
123
48
-
Ala
GGC
[ENA]
¡û
>WENV170629987
FUWD013289162
[FUWD] metagenome; unknown
123
48
-
Ala
GGC
[ENA]
¡û
>W141818981
JQLX01000011
Campylobacterota
Hippea jasoniae [JQLX]
206343
206418
+
Ala
GGC
[ENA]
¡û
>SRA1019437
SRR035082.457407
454 Sequencing (SRP001803)
228
153
-
Ala
GGC
[SRA]
>SRA1031460
SRR035087.433601
454 Sequencing (SRP001808)
63
138
+
Ala
GGC
[SRA]
>C11110447
CP002606
Campylobacterota
Hippea maritima DSM 10411 [CP002606]
111909
111984
+
Ala
GGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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