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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30520 (6 seq.)
>WENV170233646
CEQJ01051274
[CEQJ] marine metagenome genome assembly TARA_076_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
516
607
+
Ser
GCT
[ENA]
¡û
>WENV170252078
CEQT01220730
[CEQT] marine metagenome genome assembly TARA_072_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
547
456
-
Ser
GCT
[ENA]
¡û
>WENV170318341
CESQ01034698
[CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
694
785
+
Ser
GCT
[ENA]
¡û
>WENV170812742
MDSW01188657
[MDSW] marine metagenome; seawater
1811
1902
+
Ser
GCT
[ENA]
¡û
>WENV170824369
MDSY01074535
[MDSY] marine metagenome; seawater
1273
1182
-
Ser
GCT
[ENA]
¡û
>WENV170853535
MDTA01171680
[MDTA] marine metagenome; seawater
181302
181393
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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