This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30524 (61 seq.)
>W1711111012
LTWB01000032
Fusobacteriota
Fusobacterium sp. HMSC065F01 [LTWB]
11352
11441
+
Ser
GCT
[ENA]
¡û
>WENV180611205
OCPW01011279
[OCPW] human gut metagenome; human gut
907
996
+
Ser
GCT
[ENA]
¢þ
>WENV180720990
ODGK01000322
[ODGK] human metagenome; G_DNA_Palatine Tonsils
2098
2187
+
Ser
GCT
[ENA]
¢þ
>WENV180722051
ODGL01065932
[ODGL] human metagenome; G_DNA_Subgingival plaque
215
126
-
Ser
GCT
[ENA]
¢þ
>WENV180734708
ODGZ01018662
[ODGZ] human metagenome; G_DNA_Supragingival plaque
321
232
-
Ser
GCT
[ENA]
¢þ
>WENV180736506
ODHB01127435
[ODHB] human metagenome; G_DNA_Supragingival plaque
186
97
-
Ser
GCT
[ENA]
¢þ
>WENV180750663
ODHS01005290
[ODHS] human metagenome; G_DNA_Supragingival plaque
4694
4605
-
Ser
GCT
[ENA]
¢þ
>WENV180751228
ODHS01031676
[ODHS] human metagenome; G_DNA_Supragingival plaque
1
90
+
Ser
GCT
[ENA]
¢þ
>WENV180789388
ODIS01475134
[ODIS] human metagenome; G_DNA_Supragingival plaque
6
95
+
Ser
GCT
[ENA]
¢þ
>W141078959
ATKD01000087
Fusobacteriota
Fusobacterium animalis subsp. animalis ChDC F324 [ATKD]
22
111
+
Ser
GCT
[ENA]
¡û
>WENV180810025
ODJK01093379
[ODJK] human metagenome; G_DNA_Subgingival plaque
6
95
+
Ser
GCT
[ENA]
¢þ
>WENV180856649
ODKZ01042159
[ODKZ] human metagenome; G_DNA_Tongue dorsum
6
95
+
Ser
GCT
[ENA]
¢þ
>WENV180881658
ODMA01023773
[ODMA] human metagenome; G_DNA_Supragingival plaque
90
1
-
Ser
GCT
[ENA]
¢þ
>WENV180889956
ODMN01257522
[ODMN] human metagenome; G_DNA_Supragingival plaque
121
32
-
Ser
GCT
[ENA]
¢þ
>WENV180951332
ODUH01017715
[ODUH] human metagenome; G_DNA_Subgingival plaque
6
95
+
Ser
GCT
[ENA]
¢þ
>WENV180975009
ODUY01000746
[ODUY] human metagenome; G_DNA_Supragingival plaque
249
160
-
Ser
GCT
[ENA]
¢þ
>WENV180979678
ODVC01000691
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
12984
12895
-
Ser
GCT
[ENA]
¢þ
>WENV180991680
ODVO01000340
[ODVO] human metagenome; G_DNA_Buccal mucosa
12984
12895
-
Ser
GCT
[ENA]
¢þ
>WENV181019627
ODWU01007752
[ODWU] human metagenome; G_DNA_Supragingival plaque
557
468
-
Ser
GCT
[ENA]
¢þ
>WENV181076854
OEAP01015694
[OEAP] human metagenome; G_DNA_Supragingival plaque
2719
2630
-
Ser
GCT
[ENA]
¢þ
>WENV181120166
OEFJ01008671
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
625
714
+
Ser
GCT
[ENA]
¢þ
>WENV181135562
OEGG01036912
[OEGG] human metagenome; G_DNA_Tongue dorsum
60
149
+
Ser
GCT
[ENA]
¢þ
>WENV181427237
OGCQ01048863
[OGCQ] human gut metagenome; human gut
677
766
+
Ser
GCT
[ENA]
¢þ
>WENV181471280
OGEW01000310
[OGEW] metagenome; Human gut stool
7575
7486
-
Ser
GCT
[ENA]
¢þ
>WENV181510479
OGGR01000090
[OGGR] metagenome; Human gut stool
70056
69967
-
Ser
GCT
[ENA]
¢þ
>WENV181537447
OGHW01015926
[OGHW] metagenome; Human gut stool
888
977
+
Ser
GCT
[ENA]
¢þ
>WENV181559626
OGIZ01008842
[OGIZ] metagenome; Human gut stool
1369
1280
-
Ser
GCT
[ENA]
¢þ
>W141157946
AXNW01000027
Fusobacteriota
Fusobacterium nucleatum CTI-5 [AXNW]
81610
81699
+
Ser
GCT
[ENA]
¡û
>W141157998
AXNX01000022
Fusobacteriota
Fusobacterium nucleatum CTI-3 [AXNX]
124709
124798
+
Ser
GCT
[ENA]
¡û
>W141158086
AXNZ01000023
Fusobacteriota
Fusobacterium nucleatum CTI-1 [AXNZ]
13106
13195
+
Ser
GCT
[ENA]
¡û
>W141168140
AXUR01000021
Fusobacteriota
Fusobacterium nucleatum W1481 [AXUR]
25786
25697
-
Ser
GCT
[ENA]
¡û
>WENV181867922
OGWW01004805
[OGWW] human gut metagenome; faeces
4297
4386
+
Ser
GCT
[ENA]
¢þ
>WENV181874149
OGXA01007060
[OGXA] human gut metagenome; faeces
5264
5353
+
Ser
GCT
[ENA]
¢þ
>WENV182005897
OHBE01029601
[OHBE] human gut metagenome; faeces
1102
1191
+
Ser
GCT
[ENA]
¢þ
>WENV182521924
OIWQ01086389
[OIWQ] human gut metagenome; faeces
112
201
+
Ser
GCT
[ENA]
¢þ
>WENV182867265
OKRR01009473
[OKRR] human gut metagenome; faeces
1387
1476
+
Ser
GCT
[ENA]
¢þ
>W141284883
JANB01000026
Fusobacteriota
Fusobacterium sp. CM1 [JANB]
12298
12209
-
Ser
GCT
[ENA]
¡û
>WENV182881956
OKSA01068903
[OKSA] human gut metagenome; faeces
269
180
-
Ser
GCT
[ENA]
¢þ
>WENV183251814
OLRI01000139
[OLRI] human gut metagenome; faeces
17140
17051
-
Ser
GCT
[ENA]
¢þ
>C181058899
CP022124
Fusobacteriota
Fusobacterium animalis ChDC F332 [CP022124]
1245603
1245514
-
Ser
GCT
-
¡û
>W09118642
ACDE01000013
Fusobacteriota
Fusobacterium vincentii 4_1_13 [ACDE]
207310
207399
+
Ser
GCT
[ENA]
¡û
>W09118682
ACDF01000002
Fusobacteriota
Fusobacterium animalis 7_1 [ACDF]
28997
28908
-
Ser
GCT
[ENA]
¡û
>W09119353
ACDS01000221
Fusobacteriota
Fusobacterium animalis D11 [ACDS]
11337
11426
+
Ser
GCT
[ENA]
¡û
>W1910212546
FMJA01000005
Fusobacteriota
Fusobacterium massiliense Marseille-P2749 [FMJA]
121414
121325
-
Ser
GCT
[ENA]
¡û
>W1910942351
NJGJ01000001
Fusobacteriota
Fusobacterium animalis [NJGJ]
1969665
1969754
+
Ser
GCT
[ENA]
¡û
>W1911160071
NPNC01000050
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_LM [NPNC]
2463
2374
-
Ser
GCT
[ENA]
¡û
>W1911160111
NPND01000009
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_CP [NPND]
61497
61408
-
Ser
GCT
[ENA]
¡û
>W1911596341
PNHC01000001
Fusobacteriota
Fusobacterium nucleatum UMB0249 [PNHC]
47716
47627
-
Ser
GCT
[ENA]
¡û
>C151016788
CP007062
Fusobacteriota
Fusobacterium animalis 7_1 [CP007062]
1576404
1576493
+
Ser
GCT
[Ensembl]
¡û
>C151097746
CP012713
Fusobacteriota
Fusobacterium animalis KCOM 1279 [CP012713]
792683
792594
-
Ser
GCT
-
¡û
>C151097824
CP012715
Fusobacteriota
Fusobacterium animalis KCOM 1325 [CP012715]
374584
374495
-
Ser
GCT
-
¡û
>W10103271
ACQE01000036
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
25204
25293
+
Ser
GCT
[ENA]
¡û
>W11103427
ACQE01000036
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
25204
25293
+
Ser
GCT
[ENA]
¡û
>W11106132
ACUO01000016
Fusobacteriota
Fusobacterium animalis 11_3_2 [ACUO]
15424
15513
+
Ser
GCT
[ENA]
¡û
>W11115202
ADEE01000029
Fusobacteriota
Fusobacterium animalis 21_1A [ADEE]
136190
136279
+
Ser
GCT
[ENA]
¡û
>W11171131
AFQD01000226
Fusobacteriota
Fusobacterium animalis subsp. animalis ATCC 51191 [AFQD]
4867
4956
+
Ser
GCT
[ENA]
¡û
>W121007439
AGAD01000285
Fusobacteriota
Fusobacterium sp. oral taxon 370 oral taxon 370 str. F0437 [AGAD]
16070
15981
-
Ser
GCT
[ENA]
¡û
>W121009351
AGEH01000010
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AGEH]
85008
85097
+
Ser
GCT
[ENA]
¡û
>W121076759
AKBT01000001
Fusobacteriota
Fusobacterium animalis 7_1 [AKBT]
405222
405133
-
Ser
GCT
[ENA]
¡û
>W121077387
AKCE01000001
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AKCE]
1325650
1325561
-
Ser
GCT
[ENA]
¡û
>C131005530
CP003723
Fusobacteriota
Fusobacterium animalis 4_8 [CP003723]
594620
594531
-
Ser
GCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK