This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305322 (116 seq.)
>W131215658
ATVE01000008
Actinomycetota
Bifidobacterium magnum DSM 20222 [ATVE]
33448
33373
-
Ala
TGC
[ENA]
¡û
>W131218232
ATXM01000006
Actinomycetota
Bifidobacterium minimum DSM 20102 [ATXM]
121275
121348
+
Ala
TGC
[ENA]
¡û
>WENV180122094
OAST01000439
[OAST] human gut metagenome; faeces
999
926
-
Ala
TGC
[ENA]
¢þ
>WENV180146487
OAUF01000459
[OAUF] human gut metagenome; faeces
126
53
-
Ala
TGC
[ENA]
¢þ
>WENV180181502
OAWN01000006
[OAWN] human gut metagenome; faeces
44641
44568
-
Ala
TGC
[ENA]
¢þ
>WENV180181599
OAWN01000052
[OAWN] human gut metagenome; faeces
33781
33854
+
Ala
TGC
[ENA]
¢þ
>WENV180183657
OAWQ01000054
[OAWQ] human gut metagenome; faeces
33605
33678
+
Ala
TGC
[ENA]
¢þ
>WENV180289751
OBIU01000106
[OBIU] human gut metagenome; human gut
6928
6855
-
Ala
TGC
[ENA]
¢þ
>WENV180409742
OBUV01000322
[OBUV] human gut metagenome; faeces
6206
6279
+
Ala
TGC
[ENA]
¢þ
>WENV180454304
OBXM01018427
[OBXM] human gut metagenome; faeces
226
299
+
Ala
TGC
[ENA]
¢þ
>WENV180458843
OBXW01000530
[OBXW] human gut metagenome; faeces
18857
18930
+
Ala
TGC
[ENA]
¢þ
>WENV180458970
OBXW01001319
[OBXW] human gut metagenome; faeces
3472
3399
-
Ala
TGC
[ENA]
¢þ
>WENV180458997
OBXW01001986
[OBXW] human gut metagenome; faeces
3634
3561
-
Ala
TGC
[ENA]
¢þ
>WENV180493574
OBZZ01000083
[OBZZ] human gut metagenome; faeces
46868
46795
-
Ala
TGC
[ENA]
¢þ
>WENV180501604
OCAK01002489
[OCAK] human gut metagenome; faeces
984
1057
+
Ala
TGC
[ENA]
¢þ
>WENV180501662
OCAK01003272
[OCAK] human gut metagenome; faeces
151
78
-
Ala
TGC
[ENA]
¢þ
>WENV180505017
OCAO01000654
[OCAO] human gut metagenome; faeces
1989
2062
+
Ala
TGC
[ENA]
¢þ
>WENV180521789
OCHF01066028
[OCHF] human gut metagenome; human gut
383
310
-
Ala
TGC
[ENA]
¢þ
>WENV180618990
OCQB01001015
[OCQB] human gut metagenome; human gut
15093
15166
+
Ala
TGC
[ENA]
¢þ
>WENV181104313
OEDH01029744
[OEDH] human gut metagenome; human gut
182
109
-
Ala
TGC
[ENA]
¢þ
>WENV181219654
OFCP01000244
[OFCP] metagenome; Human gut stool
34407
34480
+
Ala
TGC
[ENA]
¢þ
>WENV181327683
OFLR01000001
[OFLR] metagenome; faeces
28072
27999
-
Ala
TGC
[ENA]
¢þ
>WENV181465682
OGEQ01000208
[OGEQ] metagenome; Human gut stool
47930
47857
-
Ala
TGC
[ENA]
¢þ
>WENV181470420
OGEU01004378
[OGEU] metagenome; Human gut stool
7462
7535
+
Ala
TGC
[ENA]
¢þ
>W141145399
AWUN01000007
Actinomycetota
Bifidobacterium sp. 7101 [AWUN]
103645
103718
+
Ala
TGC
[ENA]
¡û
>WENV181483421
OGFK01004331
[OGFK] metagenome; Human gut stool
359
286
-
Ala
TGC
[ENA]
¢þ
>WENV181506114
OGGM01000123
[OGGM] metagenome; Human gut stool
73624
73697
+
Ala
TGC
[ENA]
¢þ
>WENV181560225
OGJC01000005
[OGJC] metagenome; Human gut stool
303428
303501
+
Ala
TGC
[ENA]
¢þ
>WENV181587937
OGKH01000133
[OGKH] metagenome; Human gut stool
64612
64685
+
Ala
TGC
[ENA]
¢þ
>WENV181665638
OGOJ01002781
[OGOJ] human gut metagenome; faeces
7023
7096
+
Ala
TGC
[ENA]
¢þ
>WENV181697778
OGPE01002480
[OGPE] human gut metagenome; faeces
2707
2634
-
Ala
TGC
[ENA]
¢þ
>WENV181703104
OGPJ01002869
[OGPJ] human gut metagenome; faeces
4270
4196
-
Ala
TGC
[ENA]
¢þ
>WENV181703315
OGPJ01006516
[OGPJ] human gut metagenome; faeces
3036
2963
-
Ala
TGC
[ENA]
¢þ
>WENV181720298
OGPU01008066
[OGPU] human gut metagenome; faeces
4028
4101
+
Ala
TGC
[ENA]
¢þ
>WENV181801501
OGSB01000407
[OGSB] human gut metagenome; fecal sample 5 from infant 3
5553
5480
-
Ala
TGC
[ENA]
¢þ
>WENV181810354
OGSV01000011
[OGSV] human gut metagenome; fecal sample 4 from infant 3
317709
317782
+
Ala
TGC
[ENA]
¢þ
>WENV181822897
OGUH01000195
[OGUH] human gut metagenome; fecal sample 3 from infant 3
12268
12195
-
Ala
TGC
[ENA]
¢þ
>WENV181934096
OGYT01001422
[OGYT] human gut metagenome; faeces
5594
5667
+
Ala
TGC
[ENA]
¢þ
>WENV181934517
OGYT01013908
[OGYT] human gut metagenome; faeces
1000
927
-
Ala
TGC
[ENA]
¢þ
>WENV182401890
OIES01000010
[OIES] human gut metagenome; human gut
149708
149781
+
Ala
TGC
[ENA]
¢þ
>WENV182425939
OIHN01000483
[OIHN] human gut metagenome; human gut
1247
1320
+
Ala
TGC
[ENA]
¢þ
>WENV182480042
OIQW01000228
[OIQW] human gut metagenome; human gut
11306
11379
+
Ala
TGC
[ENA]
¢þ
>WENV182481067
OIQZ01001794
[OIQZ] human gut metagenome; human gut
250
323
+
Ala
TGC
[ENA]
¢þ
>WENV182481259
OIRB01000045
[OIRB] human gut metagenome; human gut
22513
22440
-
Ala
TGC
[ENA]
¢þ
>WENV182487821
OIRX01005087
[OIRX] human gut metagenome; human gut
847
774
-
Ala
TGC
[ENA]
¢þ
>WENV182491400
OISK01001038
[OISK] human gut metagenome; human gut
1819
1892
+
Ala
TGC
[ENA]
¢þ
>WENV182505600
OIUY01000138
[OIUY] human gut metagenome; human gut
12855
12928
+
Ala
TGC
[ENA]
¢þ
>WENV182507472
OIVM01000579
[OIVM] human gut metagenome; human gut
2690
2617
-
Ala
TGC
[ENA]
¢þ
>WENV182623144
OJKK01021494
[OJKK] metagenome; faeces
322
249
-
Ala
TGC
[ENA]
¢þ
>WENV182793055
OJSO01048813
[OJSO] human gut metagenome; human gut
148
75
-
Ala
TGC
[ENA]
¢þ
>WENV182805469
OJVE01000492
[OJVE] human gut metagenome; human gut
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV182817617
OJZM01000145
[OJZM] human gut metagenome; human gut
47981
47908
-
Ala
TGC
[ENA]
¢þ
>WENV182863173
OKPQ01004224
[OKPQ] human gut metagenome; human gut
148
75
-
Ala
TGC
[ENA]
¢þ
>WENV182952256
OKVW01000011
[OKVW] human gut metagenome; human gut
52411
52338
-
Ala
TGC
[ENA]
¢þ
>WENV183011754
OLEA01000615
[OLEA] human gut metagenome; human gut
3584
3511
-
Ala
TGC
[ENA]
¢þ
>WENV183018168
OLEY01000321
[OLEY] human gut metagenome; human gut
148
75
-
Ala
TGC
[ENA]
¢þ
>WENV183119056
OLNT01001789
[OLNT] human gut metagenome; faeces
5712
5785
+
Ala
TGC
[ENA]
¢þ
>WENV183157235
OLOT01000172
[OLOT] human gut metagenome; faeces
5636
5709
+
Ala
TGC
[ENA]
¢þ
>WENV183157324
OLOT01000440
[OLOT] human gut metagenome; faeces
1004
1077
+
Ala
TGC
[ENA]
¢þ
>WENV183167292
OLOZ01000068
[OLOZ] human gut metagenome; faeces
33641
33714
+
Ala
TGC
[ENA]
¢þ
>WENV183215092
OLQG01000138
[OLQG] human gut metagenome; faeces
44143
44216
+
Ala
TGC
[ENA]
¢þ
>WENV183227644
OLQQ01000342
[OLQQ] human gut metagenome; faeces
7347
7274
-
Ala
TGC
[ENA]
¢þ
>WENV183265880
OLRT01000135
[OLRT] human gut metagenome; faeces
42803
42876
+
Ala
TGC
[ENA]
¢þ
>WENV183307350
OLTF01000371
[OLTF] human gut metagenome; faeces
1089
1162
+
Ala
TGC
[ENA]
¢þ
>WENV183501500
OMGS01000394
[OMGS] human gut metagenome; human gut
3035
3108
+
Ala
TGC
[ENA]
¢þ
>WENV183522702
ONZR01000845
[ONZR] human gut metagenome; human gut
5526
5453
-
Ala
TGC
[ENA]
¢þ
>WENV183567045
OOCB01000147
[OOCB] human gut metagenome; human gut
28676
28603
-
Ala
TGC
[ENA]
¢þ
>WENV183605879
OODN01000081
[OODN] human gut metagenome; human gut
43939
43866
-
Ala
TGC
[ENA]
¢þ
>WENV183605882
OODN01000082
[OODN] human gut metagenome; human gut
26184
26257
+
Ala
TGC
[ENA]
¢þ
>WENV183655109
OQWD01005707
[OQWD] human gut metagenome; human gut
1477
1404
-
Ala
TGC
[ENA]
¢þ
>WENV183762438
PPYE01275953
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
21948
22021
+
Ala
TGC
[ENA]
¢þ
>C181027229
CP017696
Actinomycetota
Bifidobacterium asteroides DSM 20089 [CP017696]
2014823
2014750
-
Ala
TGC
-
¡û
>W141524030
JGYT01000005
Actinomycetota
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 [JGYT]
180599
180672
+
Ala
TGC
[ENA]
¡û
>W141524466
JGZB01000011
Actinomycetota
Bifidobacterium magnum [JGZB]
33220
33145
-
Ala
TGC
[ENA]
¡û
>W141524521
JGZD01000004
Actinomycetota
Bifidobacterium minimum [JGZD]
26311
26238
-
Ala
TGC
[ENA]
¡û
>W09112565
ABXY01000001
Actinomycetota
Bifidobacterium catenulatum DSM 16992 [ABXY]
44720
44647
-
Ala
TGC
[ENA]
¡û
>W1910178476
BJEZ01000008
Actinomycetota
Bifidobacterium moukalabense GG01 [BJEZ]
42429
42356
-
Ala
TGC
[ENA]
¡û
>W1910178795
BJFG01000001
Actinomycetota
Bifidobacterium moukalabense CD14 [BJFG]
702776
702849
+
Ala
TGC
[ENA]
¡û
>W1910178884
BJFH01000008
Actinomycetota
Bifidobacterium moukalabense CD16 [BJFH]
42269
42196
-
Ala
TGC
[ENA]
¡û
>W1910178894
BJFI01000001
Actinomycetota
Bifidobacterium moukalabense CD33 [BJFI]
42395
42322
-
Ala
TGC
[ENA]
¡û
>W1910178953
BJFJ01000001
Actinomycetota
Bifidobacterium moukalabense EB43 [BJFJ]
702776
702849
+
Ala
TGC
[ENA]
¡û
>W1910179040
BJFK01000011
Actinomycetota
Bifidobacterium moukalabense EB44 [BJFK]
19743
19670
-
Ala
TGC
[ENA]
¡û
>W1910814878
MVOH01000001
Actinomycetota
Bifidobacterium criceti 71 [MVOH]
2781
2854
+
Ala
TGC
[ENA]
¡û
>W1911162367
NPOR01000010
Actinomycetota
Bifidobacterium sp. wkB338 [NPOR]
13716
13789
+
Ala
TGC
[ENA]
¡û
>W1911722401
QRAJ01000005
Actinomycetota
Bifidobacterium mongoliense BMONG18 [QRAJ]
145552
145625
+
Ala
TGC
[ENA]
¡û
>W1810052372
PDCG01000003
Actinomycetota
Bifidobacterium aemilianum XV10 [PDCG]
42034
41961
-
Ala
TGC
[ENA]
¡û
>W1810120982
PHUA01000001
Actinomycetota
Bifidobacterium psychraerophilum DSM 22366 [PHUA]
930920
930847
-
Ala
TGC
[ENA]
¡û
>W1810603568
QGLJ01000002
Actinomycetota
Bifidobacterium asteroides ESL0198 [QGLJ]
27369
27296
-
Ala
TGC
[ENA]
¡û
>W1810603652
QGLL01000001
Actinomycetota
Bifidobacterium asteroides ESL0200 [QGLL]
64943
64870
-
Ala
TGC
[ENA]
¡û
>W1810824938
QSHW01000004
Actinomycetota
Bifidobacterium bifidum AM36-1AC [QSHW]
82107
82034
-
Ala
TGC
[ENA]
¡û
>W1810832023
QSOS01000001
Actinomycetota
Bifidobacterium bifidum TM07-4AC [QSOS]
81911
81838
-
Ala
TGC
[ENA]
¡û
>W1810832447
QSPA01000006
Actinomycetota
Bifidobacterium bifidum TM06-5 [QSPA]
81774
81701
-
Ala
TGC
[ENA]
¡û
>W1810837711
QSSS01000004
Actinomycetota
Bifidobacterium bifidum TF05-1 [QSSS]
177387
177460
+
Ala
TGC
[ENA]
¡û
>C151000410
AP012326
Actinomycetota
Bifidobacterium dentium JCM 1195 = DSM 20436 [AP012326]
19138
19065
-
Ala
TGC
[Ensembl]
¡û
>C151008636
CP006018
Actinomycetota
Bifidobacterium indicum LMG 11587 = DSM 20214 [CP006018]
56547
56472
-
Ala
TGC
[Ensembl]
¡û
>C151021884
CP007287
Actinomycetota
Bifidobacterium coryneforme LMG18911 [CP007287]
58068
57993
-
Ala
TGC
[Ensembl]
¡û
>W10127742
AEEQ01000011
Actinomycetota
Bifidobacterium dentium ATCC 27679 [AEEQ]
332041
332114
+
Ala
TGC
[ENA]
¡û
>C10101534
CP001750
Actinomycetota
Bifidobacterium dentium Bd1 [CP001750]
19138
19065
-
Ala
TGC
[Ensembl]
¡û
>W1511365366
JSEA01000008
Actinomycetota
Bifidobacterium bifidum LMG 13195 [JSEA]
82855
82782
-
Ala
TGC
[ENA]
¡û
>W1511483975
JWME01000002
Actinomycetota
Bifidobacterium asteroides Bin2 [JWME]
38041
37968
-
Ala
TGC
[ENA]
¡û
>W1511484016
JWMF01000002
Actinomycetota
Bifidobacterium mellis Bin7 [JWMF]
30825
30752
-
Ala
TGC
[ENA]
¡û
>W11135230
AEEQ01000011
Actinomycetota
Bifidobacterium dentium ATCC 27679 [AEEQ]
332041
332114
+
Ala
TGC
[ENA]
¡û
>W1511501507
JXBX01000002
Actinomycetota
Bifidobacterium coryneforme Bma6 [JXBX]
24760
24687
-
Ala
TGC
[ENA]
¡û
>W11137324
AEHJ01000022
Actinomycetota
Bifidobacterium dentium JCVIHMP022 [AEHJ]
47913
47840
-
Ala
TGC
[ENA]
¡û
>W1610075749
BCYE01000022
Actinomycetota
Bifidobacterium dentium [BCYE]
110313
110240
-
Ala
TGC
[ENA]
¡û
>W1610098209
CYXQ01000007
Actinomycetota
Bifidobacterium bifidum [CYXQ]
39564
39637
+
Ala
TGC
[ENA]
¡û
>C131003043
CP003325
Actinomycetota
Bifidobacterium asteroides PRL2011 [CP003325]
66755
66682
-
Ala
TGC
[Ensembl]
¡û
>W1610518732
JDTP01000016
Actinomycetota
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 [JDTP]
104
31
-
Ala
TGC
[ENA]
¡û
>W1610519111
JDTX01000017
Actinomycetota
Bifidobacterium subtile DSM 20096 [JDTX]
152
79
-
Ala
TGC
[ENA]
¡û
>W1610519887
JDUO01000031
Actinomycetota
Bifidobacterium mongoliense DSM 21395 [JDUO]
4823
4750
-
Ala
TGC
[ENA]
¡û
>WENV085337
BABC01000406
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
5521
5598
+
Ala
TGC
[ENA]
>W1710073564
BCYE01000022
Actinomycetota
Bifidobacterium dentium [BCYE]
110313
110240
-
Ala
TGC
[ENA]
¡û
>W1710100964
CYXQ01000007
Actinomycetota
Bifidobacterium bifidum [CYXQ]
39564
39637
+
Ala
TGC
[ENA]
¡û
>W1710614252
JDTP01000016
Actinomycetota
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 [JDTP]
104
31
-
Ala
TGC
[ENA]
¡û
>W1710614566
JDTX01000017
Actinomycetota
Bifidobacterium subtile DSM 20096 [JDTX]
152
79
-
Ala
TGC
[ENA]
¡û
>W1710615300
JDUO01000031
Actinomycetota
Bifidobacterium mongoliense DSM 21395 [JDUO]
4823
4750
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK