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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305322 (23 seq.)
>W1910177179
BJDO01000017
Bacillota
Lactobacillus sp. 887-11 [BJDO]
50451
50523
+
Thr
GGT
[ENA]
¡û
>W1911631855
PUFJ01000027
Bacillota
Lactobacillus silagei JCM 19001 DSM 27022 [PUFJ]
3470
3398
-
Thr
GGT
[ENA]
¡û
>W2010090556
BJDO01000017
Bacillota
Lactobacillus sp. 887-11 [BJDO]
50451
50523
+
Thr
GGT
[ENA]
¡û
>W2010578742
JAAXLJ010000013
Bacillota
Lactobacillus sp. LC28-10 [JAAXLJ]
280
208
-
Thr
GGT
[ENA]
¡û
>W2011222870
PUFJ01000027
Bacillota
Lactobacillus silagei JCM 19001 DSM 27022 [PUFJ]
3470
3398
-
Thr
GGT
[ENA]
¡û
>W2012398207
WNJO01000013
Bacillota
Lactobacillus sp. CRM56-3 [WNJO]
51021
51093
+
Thr
GGT
[ENA]
¡û
>W2110057923
BOLK01000014
Bacillota
Secundilactobacillus sp. F79-211-2 [BOLK]
68321
68393
+
Thr
GGT
[ENA]
¡û
>W2110797649
WQOF01000009
Bacillota
Secundilactobacillus kimchicus MCC634 [WQOF]
61155
61083
-
Thr
GGT
[ENA]
¡û
>W1610033416
AZCX01000013
Bacillota
Secundilactobacillus kimchicus JCM 15530 [AZCX]
77
149
+
Thr
GGT
[ENA]
¡û
>W1610035009
AZEE01000017
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
51883
51811
-
Thr
GGT
[ENA]
¡û
>W1610049949
BBFJ01000013
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
126
198
+
Thr
GGT
[ENA]
¡û
>W1610049990
BBFK01000012
Bacillota
Secundilactobacillus kimchicus JCM 15530 [BBFK]
47
119
+
Thr
GGT
[ENA]
¡û
>W1610050052
BBFL01000026
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
17785
17857
+
Thr
GGT
[ENA]
¡û
>W1710030688
AZCX01000013
Bacillota
Secundilactobacillus kimchicus JCM 15530 [AZCX]
77
149
+
Thr
GGT
[ENA]
¡û
>W1710032136
AZEE01000017
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
51883
51811
-
Thr
GGT
[ENA]
¡û
>W1710046348
BBFJ01000013
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
126
198
+
Thr
GGT
[ENA]
¡û
>W1710046389
BBFK01000012
Bacillota
Secundilactobacillus kimchicus JCM 15530 [BBFK]
47
119
+
Thr
GGT
[ENA]
¡û
>W1710046451
BBFL01000026
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
17785
17857
+
Thr
GGT
[ENA]
¡û
>W1710058502
BCMF01000015
Bacillota
Secundilactobacillus mixtipabuli [BCMF]
316
244
-
Thr
GGT
[ENA]
¡û
>W1710058579
BCMG01000015
Bacillota
Secundilactobacillus silagei [BCMG]
50936
51008
+
Thr
GGT
[ENA]
¡û
>W1710058622
BCMH01000020
Bacillota
Secundilactobacillus pentosiphilus IWT140 [BCMH]
37654
37726
+
Thr
GGT
[ENA]
¡û
>W1710058677
BCMI01000014
Bacillota
Secundilactobacillus pentosiphilus IWT25 [BCMI]
752
680
-
Thr
GGT
[ENA]
¡û
>W1710058726
BCMJ01000009
Bacillota
Secundilactobacillus silagincola IWT5 [BCMJ]
261
189
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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