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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305545 (69 seq.)
>W1710913386
LNSK01000004
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
285456
285380
-
Ile
GAT
[ENA]
¡û
>W1711127870
LURB01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
1991
1915
-
Ile
GAT
[ENA]
¡û
>W131100408
AOUN01000003
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
387161
387085
-
Ile
GAT
[ENA]
¡û
>W131160241
AQWK01000037
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
1844
1920
+
Ile
GAT
[ENA]
¡û
>WENV181170481
OEIV010050318
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
354
430
+
Ile
GAT
[ENA]
¡û
>WENV181402691
OFTY01020086
[OFTY] sludge metagenome; sludge
375
451
+
Ile
GAT
[ENA]
¡û
>WENV181836427
OGVJ01006835
[OGVJ] freshwater metagenome; freshwater
966
890
-
Ile
GAT
[ENA]
¡û
>WENV181840046
OGVO01034727
[OGVO] freshwater metagenome; freshwater
90
166
+
Ile
GAT
[ENA]
¡û
>WENV181840249
OGVO01059500
[OGVO] freshwater metagenome; freshwater
241
317
+
Ile
GAT
[ENA]
¡û
>WENV181850940
OGWE01003332
[OGWE] freshwater metagenome; freshwater
172
96
-
Ile
GAT
[ENA]
¡û
>WENV183726306
PJQF01156733
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
189
265
+
Ile
GAT
[ENA]
¡û
>WENV170009823
APMI01003480
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
357
433
+
Ile
GAT
[ENA]
¡û
>WENV170728081
LULE01008348
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
2093
2017
-
Ile
GAT
[ENA]
¡û
>WENV170729551
LULF01049976
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
183
107
-
Ile
GAT
[ENA]
¡û
>WENV170729981
LULG01005575
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
1375
1299
-
Ile
GAT
[ENA]
¡û
>WENV170733155
LULJ01006643
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
1596
1520
-
Ile
GAT
[ENA]
¡û
>WENV170734699
LULK01014686
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
969
893
-
Ile
GAT
[ENA]
¡û
>WENV170735893
LULL01020028
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
1044
970
-
Ile
GAT
[ENA]
¡û
>WENV170736470
LULM01004588
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
1057
981
-
Ile
GAT
[ENA]
¡û
>WENV170737866
LULO01005800
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
1579
1503
-
Ile
GAT
[ENA]
¡û
>WENV170738492
LULP01000485
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
6519
6595
+
Ile
GAT
[ENA]
¡û
>WENV170739602
LULQ01004838
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
227
303
+
Ile
GAT
[ENA]
¡û
>WENV170742748
LULV01000423
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
1991
1915
-
Ile
GAT
[ENA]
¡û
>WENV170743826
LULW01004941
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
397
473
+
Ile
GAT
[ENA]
¡û
>WENV170759251
LUMS01007979
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
335
411
+
Ile
GAT
[ENA]
¡û
>WENV170759961
LUMT01001439
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
6341
6417
+
Ile
GAT
[ENA]
¡û
>WENV170761574
LUMV01001704
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
2841
2765
-
Ile
GAT
[ENA]
¡û
>WENV170770581
LXNH01113355
[LXNH] seawater metagenome; marine seawater
116
192
+
Ile
GAT
[ENA]
¡û
>C191170962
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
2834798
2834874
+
Ile
GAT
-
¡û
>C191170986
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
985068
984992
-
Ile
GAT
-
¡û
>W1910231980
FPEH01000035
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
2001
2077
+
Ile
GAT
[ENA]
¡û
>W1910501748
FYAT01000001
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
900182
900258
+
Ile
GAT
[ENA]
¡û
>W1910822164
MWMO01000013
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
54400
54476
+
Ile
GAT
[ENA]
¡û
>W1911411589
NWUR01000014
Alphaproteobacteria
Sphingopyxis ummariensis DSM 24316 [NWUR]
4155
4079
-
Ile
GAT
[ENA]
¡û
>W1810121236
PHUF01000004
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
247357
247281
-
Ile
GAT
[ENA]
¡û
>W1810195691
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
1326789
1326713
-
Ile
GAT
[ENA]
¡û
>W1810597618
QGHL01000008
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
429505
429581
+
Ile
GAT
[ENA]
¡û
>W1810597621
QGHL01000008
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
435406
435482
+
Ile
GAT
[ENA]
¡û
>W1810789415
QRGP01000002
Alphaproteobacteria
Sphingorhabdus pulchriflava GY_G [QRGP]
387118
387194
+
Ile
GAT
[ENA]
¡û
>W2010385523
FPEH01000035
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
2001
2077
+
Ile
GAT
[ENA]
¡û
>W2010421480
FYAT01000001
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
900182
900258
+
Ile
GAT
[ENA]
¡û
>W2010438052
JAAAPO010000004
Alphaproteobacteria
Novosphingobium sp. FSY-8 [JAAAPO]
463641
463717
+
Ile
GAT
[ENA]
¡û
>W2010746022
JACLAU010000078
Alphaproteobacteria
Novosphingobium flavum 4Y4 [JACLAU]
3328
3252
-
Ile
GAT
[ENA]
¡û
>W2010746068
JACLAV010000075
Alphaproteobacteria
Novosphingobium flavum 4Y9 [JACLAV]
1664
1740
+
Ile
GAT
[ENA]
¡û
>W2010746094
JACLAW010000007
Alphaproteobacteria
Novosphingobium flavum NBRC 111647 [JACLAW]
248963
249039
+
Ile
GAT
[ENA]
¡û
>W2010746161
JACLAX010000039
Alphaproteobacteria
Novosphingobium piscinae KCTC 42194 [JACLAX]
1965
2041
+
Ile
GAT
[ENA]
¡û
>W2010918586
MWMO01000013
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
54400
54476
+
Ile
GAT
[ENA]
¡û
>W2011138036
NWUR01000014
Alphaproteobacteria
Sphingopyxis ummariensis DSM 24316 [NWUR]
4155
4079
-
Ile
GAT
[ENA]
¡û
>W2011479730
RQSI01000100
Alphaproteobacteria
Novosphingobium sp. LASN5T [RQSI]
3504
3428
-
Ile
GAT
[ENA]
¡û
>W2011652676
SNZX01000002
Alphaproteobacteria
Novosphingobium sp. GV013 [SNZX]
348034
347958
-
Ile
GAT
[ENA]
¡û
>W2011652682
SNZX01000002
Alphaproteobacteria
Novosphingobium sp. GV013 [SNZX]
67363
67287
-
Ile
GAT
[ENA]
¡û
>W2011653281
SOAI01000002
Alphaproteobacteria
Novosphingobium sp. GV002 [SOAI]
348034
347958
-
Ile
GAT
[ENA]
¡û
>W2011653287
SOAI01000002
Alphaproteobacteria
Novosphingobium sp. GV002 [SOAI]
67363
67287
-
Ile
GAT
[ENA]
¡û
>C201110589
CP042345
Alphaproteobacteria
Novosphingobium ginsenosidimutans FW-6 [CP042345]
1915377
1915453
+
Ile
GAT
-
¡û
>C211082728
CP050249
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae YC-JH3 [CP050249]
3618912
3618836
-
Ile
GAT
-
¡û
>W1510019729
BBXA01000007
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
3504
3428
-
Ile
GAT
[ENA]
¡û
>W1510019732
BBXA01000019
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
85857
85781
-
Ile
GAT
[ENA]
¡û
>W1510019754
BBXA01000030
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
17436
17512
+
Ile
GAT
[ENA]
¡û
>W2110778328
VUOG01000001
Alphaproteobacteria
Novosphingobium sp. NBM11 [VUOG]
3543593
3543669
+
Ile
GAT
[ENA]
¡û
>W2110778346
VUOG01000001
Alphaproteobacteria
Novosphingobium sp. NBM11 [VUOG]
1571047
1570971
-
Ile
GAT
[ENA]
¡û
>C241328179
CP136575
Alphaproteobacteria
Sphingobium sp. [CP136575]
212579
212503
-
Ile
GAT
-
¡û
>W11151088
AEWJ01000057
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
3608
3532
-
Ile
GAT
[ENA]
¡û
>C161055599
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
1744609
1744685
+
Ile
GAT
[Ensembl]
¡û
>WENV006122
AACY020168737
Marine microbial communities from Global Ocean Sampling (GOS)
1477
1553
+
Ile
GAT
[ENA]
>W1610077682
BCZQ01000015
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
74829
74905
+
Ile
GAT
[ENA]
¡û
>W1610771745
LNSK01000004
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
285456
285380
-
Ile
GAT
[ENA]
¡û
>W1610938984
LURB01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
1991
1915
-
Ile
GAT
[ENA]
¡û
>W1710075320
BCZQ01000015
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
74829
74905
+
Ile
GAT
[ENA]
¡û
>W1710609455
FXWL01000004
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
206426
206502
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK