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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30557 (42 seq.)
>W1711024719
LRBF01000030
Betaproteobacteria
Caballeronia megalochromosomata [LRBF]
78102
78012
-
Ser
CGA
[ENA]
¡û
>W1711213180
LXJZ01000242
Betaproteobacteria
Paraburkholderia ginsengiterrae panaciterrae [LXJZ]
281494
281404
-
Ser
CGA
[ENA]
¡û
>W1711213239
LXKA01000393
Betaproteobacteria
Paraburkholderia ginsengiterrae [LXKA]
114381
114291
-
Ser
CGA
[ENA]
¡û
>C011113
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
1312730
1312820
+
Ser
CGA
[Ensembl]
¡û
>WENV180377605
OBON01059429
[OBON] marine metagenome; sea water
314
404
+
Ser
CGA
[ENA]
¢þ
>WENV181145307
OEHO01261619
[OEHO] metagenome; unknown
131
221
+
Ser
CGA
[ENA]
¢þ
>WENV183744237
PJUK01002691
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
50
140
+
Ser
CGA
[ENA]
¢þ
>WENV170622282
FUWD013095868
[FUWD] metagenome; unknown
779
869
+
Ser
CGA
[ENA]
¢þ
>WENV170629851
FUWD013283702
[FUWD] metagenome; unknown
5872
5782
-
Ser
CGA
[ENA]
¢þ
>W141462016
JFHD01000005
Betaproteobacteria
Caballeronia zhejiangensis [JFHD]
248733
248643
-
Ser
CGA
[ENA]
¡û
>W141462143
JFHF01000031
Betaproteobacteria
Caballeronia jiangsuensis MP-1 [JFHF]
25041
25131
+
Ser
CGA
[ENA]
¡û
>C181169403
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
2383519
2383609
+
Ser
CGA
-
¡û
>W1911531863
OGTP01000010
Betaproteobacteria
Caballeronia novacaledonica [OGTP]
194901
194811
-
Ser
CGA
[ENA]
¡û
>W1911647600
QAJP01000004
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
438340
438430
+
Ser
CGA
[ENA]
¡û
>W1810915095
QVQV01000004
Betaproteobacteria
Paraburkholderia sp. DHOC27 [QVQV]
507309
507219
-
Ser
CGA
[ENA]
¡û
>C151002209
AP014576
Betaproteobacteria
Burkholderia sp. RPE67 [AP014576, AP014577, AP014578]
702404
702494
+
Ser
CGA
-
¡û
>SRA1051487
SRR035098.13699
454 Sequencing (SRP001819)
95
5
-
Ser
CGA
[SRA]
>SRA1053090
SRR035098.334189
454 Sequencing (SRP001819)
345
255
-
Ser
CGA
[SRA]
>W1511361430
JSBM01000016
Betaproteobacteria
Caballeronia zhejiangensis CEIB S4-3 [JSBM]
247954
248044
+
Ser
CGA
[ENA]
¡û
>W1511683446
LFKV01000048
Betaproteobacteria
Candidatus Paraburkholderia kirkii kirkii UZHbot2 [LFKV]
161113
161203
+
Ser
CGA
[ENA]
¡û
>W1511684879
LFMX01000031
Betaproteobacteria
Candidatus Burkholderia humilis humilis UZHbot5 [LFMX]
22594
22504
-
Ser
CGA
[ENA]
¡û
>W1511705309
LGRC01000002
Betaproteobacteria
Caballeronia cordobensis LMG 27620 [LGRC]
89699
89789
+
Ser
CGA
[ENA]
¡û
>W11187619
CAFE01000213
Betaproteobacteria
Candidatus Paraburkholderia kirkii kirkii UZHbot1 [CAFE]
42408
42318
-
Ser
CGA
[ENA]
¡û
>C121005497
CP003087
Betaproteobacteria
Burkholderia sp. YI23 [CP003087, CP003088, CP003089]
733540
733630
+
Ser
CGA
[Ensembl]
¡û
>W121062133
AJHK01000006
Betaproteobacteria
Burkholderia sp. SJ98 [AJHK]
459480
459390
-
Ser
CGA
[ENA]
¡û
>W1610206096
FCNX02000008
Betaproteobacteria
Caballeronia fortuita LMG 29320 [FCNX]
159649
159739
+
Ser
CGA
[ENA]
¡û
>W1610206151
FCNY02000018
Betaproteobacteria
Caballeronia cordobensis [FCNY]
89710
89800
+
Ser
CGA
[ENA]
¡û
>W1610206253
FCOA02000003
Betaproteobacteria
Caballeronia hypogeia LMG 29322 [FCOA]
428439
428349
-
Ser
CGA
[ENA]
¡û
>W1610206315
FCOB02000008
Betaproteobacteria
Caballeronia ptereochthonis LMG 29326 [FCOB]
67611
67701
+
Ser
CGA
[ENA]
¡û
>W1610206409
FCOD02000011
Betaproteobacteria
Caballeronia turbans LMG 29316 [FCOD]
113373
113463
+
Ser
CGA
[ENA]
¡û
>W1610206499
FCOE02000059
Betaproteobacteria
Caballeronia pedi LMG 29323 [FCOE]
22910
23000
+
Ser
CGA
[ENA]
¡û
>W1610206542
FCOF02000020
Betaproteobacteria
Caballeronia catudaia LMG 29318 [FCOF]
103274
103364
+
Ser
CGA
[ENA]
¡û
>W1610206614
FCOH02000002
Betaproteobacteria
Caballeronia peredens LMG 29314 [FCOH]
158507
158597
+
Ser
CGA
[ENA]
¡û
>W1610206667
FCOI02000001
Betaproteobacteria
Caballeronia temeraria LMG 29319 [FCOI]
174833
174923
+
Ser
CGA
[ENA]
¡û
>W1610206747
FCOJ02000014
Betaproteobacteria
Caballeronia glebae LMG 29325 [FCOJ]
115093
115003
-
Ser
CGA
[ENA]
¡û
>W1610206877
FCOM02000002
Betaproteobacteria
Caballeronia arvi LMG 29317 [FCOM]
170737
170827
+
Ser
CGA
[ENA]
¡û
>W1610207331
FCOX02000003
Betaproteobacteria
Caballeronia calidae LMG 29321 [FCOX]
40023
40113
+
Ser
CGA
[ENA]
¡û
>C131000845
AP013058
Betaproteobacteria
Caballeronia insecticola RPE64 [AP013058, AP013059, AP013060]
734455
734545
+
Ser
CGA
[Ensembl]
¡û
>W1610872831
LRBF01000030
Betaproteobacteria
Caballeronia megalochromosomata [LRBF]
78102
78012
-
Ser
CGA
[ENA]
¡û
>W1611000184
LXJZ01000242
Betaproteobacteria
Paraburkholderia ginsengiterrae panaciterrae [LXJZ]
281494
281404
-
Ser
CGA
[ENA]
¡û
>W1611000243
LXKA01000393
Betaproteobacteria
Paraburkholderia ginsengiterrae [LXKA]
114381
114291
-
Ser
CGA
[ENA]
¡û
>W1710207391
FCNY02000018
Betaproteobacteria
Caballeronia cordobensis [FCNY]
89710
89800
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK