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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305688 (35 seq.)
>W1711090615
LTAV01000052
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
293
368
+
Ala
TGC
[ENA]
¡û
>W1711090693
LTAW01000028
Gammaproteobacteria
Marinomonas atlantica [LTAW]
306
381
+
Ala
TGC
[ENA]
¡û
>W1711090763
LTAX01000054
Gammaproteobacteria
Marinomonas gallaica [LTAX]
125
200
+
Ala
TGC
[ENA]
¡û
>W1711138293
LVCQ01000368
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
122
197
+
Ala
TGC
[ENA]
¡û
>W1711780286
MVMI01000228
Gammaproteobacteria
Escherichia coli [MVMI]
264
189
-
Ala
TGC
[ENA]
¡û
>WENV181367280
OFPZ01000016
[OFPZ] freshwater metagenome; Freshwater Lake
4083
4008
-
Ala
TGC
[ENA]
¡û
>WENV170208525
CEPV01002431
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
262
337
+
Ala
TGC
[ENA]
¡û
>WENV170213104
CEPX01010714
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
260
335
+
Ala
TGC
[ENA]
¡û
>WENV170218099
CEPY01019850
[CEPY] marine metagenome genome assembly TARA_039_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
253
178
-
Ala
TGC
[ENA]
¡û
>WENV170657535
JTFP01000352
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
210
285
+
Ala
TGC
[ENA]
¡û
>WENV170658538
JTFP01137120
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
320
245
-
Ala
TGC
[ENA]
¡û
>WENV170658675
JTFP01177601
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
9
84
+
Ala
TGC
[ENA]
¡û
>WENV170751311
LUMI01000369
[LUMI] marine metagenome; Red Sea water column Station 34 - depth 10m
456
381
-
Ala
TGC
[ENA]
¡û
>WENV170754833
LUMM01001956
[LUMM] marine metagenome; Red Sea water column Station 22 - depth 50m
1087
1012
-
Ala
TGC
[ENA]
¡û
>WENV170755668
LUMN01011221
[LUMN] marine metagenome; Red Sea water column Station 22 - depth 25m
173
98
-
Ala
TGC
[ENA]
¡û
>C181016723
CP014752
Gammaproteobacteria
Escherichia coli PSUO103 [CP014752]
4162922
4162847
-
Ala
TGC
-
¡û
>C191082273
CP031908
Gammaproteobacteria
Escherichia coli O103:H2 FWSEC0007 [CP031908]
457105
457180
+
Ala
TGC
-
¡û
>W1910113577
BGDM01000270
Gammaproteobacteria
Escherichia coli NS-P006 [BGDM]
260
335
+
Ala
TGC
[ENA]
¡û
>W2010676486
JACCKB010000132
Gammaproteobacteria
Endozoicomonas sp. SM1973 [JACCKB]
2157
2082
-
Ala
TGC
[ENA]
¡û
>W2012023315
VFRR01000126
Gammaproteobacteria
Marinomonas sp. HB171799 [VFRR]
266
341
+
Ala
TGC
[ENA]
¡û
>W2110482950
JAFEKF010000014
Gammaproteobacteria
Marinomonas ostreistagni UST010306-043 [JAFEKF]
320
245
-
Ala
TGC
[ENA]
¡û
>C201219845
CP048878
Gammaproteobacteria
Oceanospirillales bacterium S2-4-1H [CP048878]
121674
121749
+
Ala
TGC
-
¡û
>C201219850
CP048878
Gammaproteobacteria
Oceanospirillales bacterium S2-4-1H [CP048878]
546093
546168
+
Ala
TGC
-
¡û
>C201219855
CP048878
Gammaproteobacteria
Oceanospirillales bacterium S2-4-1H [CP048878]
1523962
1524037
+
Ala
TGC
-
¡û
>C201219874
CP048878
Gammaproteobacteria
Oceanospirillales bacterium S2-4-1H [CP048878]
5672581
5672506
-
Ala
TGC
-
¡û
>C201239522
CP050498
Gammaproteobacteria
Escherichia coli RM13322 [CP050498]
2406518
2406443
-
Ala
TGC
-
¡û
>C211127748
CP060030
Gammaproteobacteria
Aeromonas salmonicida subsp. masoucida BR19001YR [CP060030]
4075596
4075671
+
Ala
TGC
-
¡û
>C231127948
CP072679
Gammaproteobacteria
Ferrimonas sp. SCSIO 43195 [CP072679]
250264
250339
+
Ala
TGC
-
¡û
>C231128013
CP072679
Gammaproteobacteria
Ferrimonas sp. SCSIO 43195 [CP072679]
4756524
4756449
-
Ala
TGC
-
¡û
>W1610506687
FLRA01000036
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
443
518
+
Ala
TGC
[ENA]
¡û
>W1610506757
FLRB01000031
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
411
336
-
Ala
TGC
[ENA]
¡û
>W1610924855
LTAV01000052
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
293
368
+
Ala
TGC
[ENA]
¡û
>W1610924933
LTAW01000028
Gammaproteobacteria
Marinomonas atlantica [LTAW]
306
381
+
Ala
TGC
[ENA]
¡û
>W1610925003
LTAX01000054
Gammaproteobacteria
Marinomonas gallaica [LTAX]
125
200
+
Ala
TGC
[ENA]
¡û
>W1610949379
LVCQ01000368
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
122
197
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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