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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306002 (12 seq.)
>W1711705128
MSQD01000050
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
267
343
+
Ile
GAT
[ENA]
¡û
>W141193972
AYSN01000045
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
109
33
-
Ile
GAT
[ENA]
¡û
>W141238332
BBKT01000006
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
27842
27766
-
Ile
GAT
[ENA]
¡û
>WENV170561517
CZCA01012653
[CZCA] anaerobic digester metagenome; anaerobic digester
1642
1566
-
Ile
GAT
[ENA]
¢þ
>C181021904
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1618755
1618831
+
Ile
GAT
-
¡û
>W09100966
AADT03000085
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
607
683
+
Ile
GAT
[ENA]
¡û
>W1910747744
MINB01000069
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
186
110
-
Ile
GAT
[ENA]
¡û
>C10113821
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
450774
450850
+
Ile
GAT
[Ensembl]
¡û
>C11123287
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
374598
374674
+
Ile
GAT
[Ensembl]
¡û
>W11150469
AEVQ01000039
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
546
622
+
Ile
GAT
[ENA]
¡û
>C121007616
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
1081093
1081169
+
Ile
GAT
[Ensembl]
¡û
>C131001908
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
405897
405973
+
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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