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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306070 (6 seq.)
>W1711019273
LQXO02000044
Gammaproteobacteria
Vibrio barjaei [LQXO]
26804
26729
-
Arg
CCT
[ENA]
¡û
>W141815389
JQHW01000056
Gammaproteobacteria
Vibrio fluvialis 560 [JQHW]
154
229
+
Arg
CCT
[ENA]
¡û
>W2110492164
JAFEUM010000003
Gammaproteobacteria
Vibrio sp. 188UL20-2 [JAFEUM]
175117
175042
-
Arg
CCT
[ENA]
¡û
>C231006924
AP024871
Gammaproteobacteria
Vibrio gallicus CIP 107863 [AP024871, AP024872]
1648876
1648801
-
Arg
CCT
-
¡û
>W1610867431
LQXO01000044
Gammaproteobacteria
Vibrio barjaei [LQXO]
26829
26754
-
Arg
CCT
[ENA]
¡û
>W1710660403
JXQD01000024
Gammaproteobacteria
Vibrio sp. qd031 [JXQD]
383288
383363
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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