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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306250 (110 seq.)
>W1710872181
LMLU01000001
Actinomycetota
Arthrobacter sp. Leaf234 [LMLU]
203244
203171
-
Glu
TTC
[ENA]
¡û
>W1710996444
LQBK01000042
Actinomycetota
Kocuria polaris [LQBK]
108006
107933
-
Glu
TTC
[ENA]
¡û
>W1711095184
LTGO01000086
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
4995
4922
-
Glu
TTC
[ENA]
¡û
>W1711096621
LTHX01000071
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
4996
4923
-
Glu
TTC
[ENA]
¡û
>W1711102608
LTNW01000004
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
4816
4743
-
Glu
TTC
[ENA]
¡û
>W1711103634
LTOW01000048
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
4998
4925
-
Glu
TTC
[ENA]
¡û
>W1711105907
LTRH01000006
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
13720
13793
+
Glu
TTC
[ENA]
¡û
>W1711106560
LTRY01000046
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
4996
4923
-
Glu
TTC
[ENA]
¡û
>W1711107201
LTSO01000033
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
5002
4929
-
Glu
TTC
[ENA]
¡û
>W1711108845
LTUC01000086
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
57801
57876
+
Glu
TTC
[ENA]
¡û
>W1711113314
LTYF01000007
Actinomycetota
Micrococcus sp. HMSC067E09 [LTYF]
19919
19846
-
Glu
TTC
[ENA]
¡û
>W1711114728
LTZO01000021
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
1013
1086
+
Glu
TTC
[ENA]
¡û
>W1711185855
LWNT01000005
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
5019
4946
-
Glu
TTC
[ENA]
¡û
>W1711185917
LWNU01000013
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
4936
4863
-
Glu
TTC
[ENA]
¡û
>W1711186532
LWOH01000032
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
5353
5280
-
Glu
TTC
[ENA]
¡û
>W1711186788
LWOM01000075
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
15402
15475
+
Glu
TTC
[ENA]
¡û
>W1711186935
LWOP01000081
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
1399
1472
+
Glu
TTC
[ENA]
¡û
>W1711186980
LWOR01000079
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
1188
1115
-
Glu
TTC
[ENA]
¡û
>W1711208391
LXGG01000008
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
1324
1251
-
Glu
TTC
[ENA]
¡û
>W1711425192
MIEU01000014
Actinomycetota
Tersicoccus sp. Bi-70 [MIEU]
126267
126192
-
Glu
TTC
[ENA]
¡û
>W1711482543
MKAX01000232
Actinomycetota
Corynebacterium sp. BCW_4722 concisus [MKAX]
137
64
-
Glu
TTC
[ENA]
¡û
>W1711502651
MKSW01000038
Actinomycetota
Actinobacteria bacterium 69-20 [MKSW]
196331
196258
-
Glu
TTC
[ENA]
¡û
>W1711510279
MLAL01000037
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
5552
5479
-
Glu
TTC
[ENA]
¡û
>W1711511735
MLCR01000010
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
295747
295820
+
Glu
TTC
[ENA]
¡û
>W1711517390
MLJM01000052
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
23497
23422
-
Glu
TTC
[ENA]
¡û
>W1711664160
MQVR01000021
Actinomycetota
Bowdeniella nasicola [MQVR]
31520
31595
+
Glu
TTC
[ENA]
¡û
>W1711667037
MRDE01000072
Actinomycetota
Tersicoccus phoenicis [MRDE]
207020
206947
-
Glu
TTC
[ENA]
¡û
>W1711719348
MTIC01000024
Actinomycetota
Sinomonas mesophila [MTIC]
32609
32682
+
Glu
TTC
[ENA]
¡û
>C171064709
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
493301
493374
+
Glu
TTC
-
¡û
>W131159194
AQUV01000004
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
5461
5388
-
Glu
TTC
[ENA]
¡û
>W131251669
CAVS020000036
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
7415
7342
-
Glu
TTC
[ENA]
¡û
>W131215310
ATUX01000005
Actinomycetota
Schaalia vaccimaxillae DSM 15804 [ATUX]
223607
223534
-
Glu
TTC
[ENA]
¡û
>WENV181401486
OFTX01000406
[OFTX] sludge metagenome; sludge
22769
22842
+
Glu
TTC
[ENA]
¢þ
>WENV181401805
OFTX01007424
[OFTX] sludge metagenome; sludge
73
1
-
Glu
TTC
[ENA]
¢þ
>W141241585
CAHK01000015
Actinomycetota
Brevibacterium senegalense JC43 [CAHK]
16228
16301
+
Glu
TTC
[ENA]
¡û
>W141243577
CAJP01000044
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
5097
5024
-
Glu
TTC
[ENA]
¡û
>WENV182641768
OJLK01000193
[OJLK] metagenome; surface
2098
2171
+
Glu
TTC
[ENA]
¢þ
>WENV182643126
OJLS01001356
[OJLS] metagenome; surface
132
57
-
Glu
TTC
[ENA]
¢þ
>WENV182671721
OJNM01001656
[OJNM] metagenome; surface
129
56
-
Glu
TTC
[ENA]
¢þ
>WENV170602011
FUWD010208840
[FUWD] metagenome; unknown
287
360
+
Glu
TTC
[ENA]
¢þ
>WENV170686636
LFRM01156580
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2877
2950
+
Glu
TTC
[ENA]
¢þ
>C181039041
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
2113710
2113637
-
Glu
TTC
-
¡û
>C181143896
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
1895339
1895266
-
Glu
TTC
-
¡û
>C181225932
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
2152365
2152290
-
Glu
TTC
-
¡û
>C191134644
CP035103
Actinomycetota
Kocuria rosea ATCC 186 [CP035103]
661905
661978
+
Glu
TTC
-
¡û
>C191163650
CP039247
Actinomycetota
Corynebacterium endometrii LMM-1653 [CP039247]
2060130
2060057
-
Glu
TTC
-
¡û
>C191174155
CP040020
Actinomycetota
Brevibacterium sp. CS2 [CP040020]
1295354
1295281
-
Glu
TTC
-
¡û
>C191210275
LR134391
Actinomycetota
Kocuria rosea NCTC7514 [LR134391]
3633330
3633257
-
Glu
TTC
-
¡û
>C191212170
LR134487
Actinomycetota
Kocuria rosea NCTC7512 [LR134487]
3370617
3370690
+
Glu
TTC
-
¡û
>W09124029
ACHJ01000023
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
267
340
+
Glu
TTC
[ENA]
¡û
>W09127976
ACLJ01000073
Actinomycetota
Corynebacterium genitalium ATCC 33030 [ACLJ]
49314
49389
+
Glu
TTC
[ENA]
¡û
>W1910182101
BJMO01000096
Actinomycetota
Sinomonas atrocyanea NBRC 12956 [BJMO]
5649
5576
-
Glu
TTC
[ENA]
¡û
>W1910225851
FMSX01000017
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
5242
5169
-
Glu
TTC
[ENA]
¡û
>W1910339919
FTLL01000025
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
74703
74778
+
Glu
TTC
[ENA]
¡û
>W1910377686
FUKP01000029
Actinomycetota
Micrococcus lylae 2B3F [FUKP]
6298
6225
-
Glu
TTC
[ENA]
¡û
>W1910442421
FWFF01000020
Actinomycetota
Brevibacterium yomogidense B Co 03.10 [FWFF]
162028
162101
+
Glu
TTC
[ENA]
¡û
>W1910469841
FWYQ01000028
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
17607
17680
+
Glu
TTC
[ENA]
¡û
>W1910498641
FXWZ01000003
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
1512681
1512608
-
Glu
TTC
[ENA]
¡û
>W1910500368
FXZF01000006
Actinomycetota
Brevibacterium sp. Mu109 [FXZF]
23713
23786
+
Glu
TTC
[ENA]
¡û
>W1910500657
FXZM01000005
Actinomycetota
Brevibacterium jeotgali SJ5-8 [FXZM]
193227
193300
+
Glu
TTC
[ENA]
¡û
>W1910549321
FZPE01000002
Actinomycetota
Micrococcales bacterium KH10 [FZPE]
121716
121789
+
Glu
TTC
[ENA]
¡û
>W1910941540
NJFJ02000001
Actinomycetota
Micrococcus sp. FDAARGOS_333 [NJFJ]
532834
532907
+
Glu
TTC
[ENA]
¡û
>W1911179038
NQMQ01000035
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
20115
20040
-
Glu
TTC
[ENA]
¡û
>W1911243344
NSGK01000010
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
66923
66998
+
Glu
TTC
[ENA]
¡û
>W1911243396
NSGL01000003
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
223179
223254
+
Glu
TTC
[ENA]
¡û
>W1911243440
NSGM01000003
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
17586
17511
-
Glu
TTC
[ENA]
¡û
>W1911243503
NSGN01000009
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
17538
17463
-
Glu
TTC
[ENA]
¡û
>W1911243561
NSGO01000010
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
20769
20694
-
Glu
TTC
[ENA]
¡û
>W1911243607
NSGP01000012
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
66230
66305
+
Glu
TTC
[ENA]
¡û
>W1911245596
NSKF01000001
Actinomycetota
Kocuria sp. WN036 [NSKF]
126816
126743
-
Glu
TTC
[ENA]
¡û
>W1911551219
OVSI01000009
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
80837
80910
+
Glu
TTC
[ENA]
¡û
>W1911594965
PNFZ01000003
Actinomycetota
Brevibacterium luteolum UMB0680 [PNFZ]
329851
329924
+
Glu
TTC
[ENA]
¡û
>W1911595591
PNGL01000006
Actinomycetota
Micrococcus lylae UMB0955 [PNGL]
27347
27274
-
Glu
TTC
[ENA]
¡û
>W1911596547
PNHG01000003
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
215161
215236
+
Glu
TTC
[ENA]
¡û
>W1911596789
PNHL01000001
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
14569
14642
+
Glu
TTC
[ENA]
¡û
>W1911719631
QQXK01000004
Actinomycetota
Galactobacter valiniphilus JZ R-35 [QQXK]
59252
59179
-
Glu
TTC
[ENA]
¡û
>W1911719728
QQXL01000008
Actinomycetota
Galactobacter caseinivorans JZ R-183 [QQXL]
60335
60262
-
Glu
TTC
[ENA]
¡û
>W1810090991
PGGT01000012
Actinomycetota
Zhihengliuella halotolerans La12 [PGGT]
21318
21391
+
Glu
TTC
[ENA]
¡û
>W1810167457
PJIM01000002
Actinomycetota
Arthrobacter sp. SX1312 [PJIM]
243925
243852
-
Glu
TTC
[ENA]
¡û
>W1810167574
PJIP01000001
Actinomycetota
Arthrobacter sp. DWC3 [PJIP]
357356
357429
+
Glu
TTC
[ENA]
¡û
>W1810187376
PKHN01000010
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
63291
63364
+
Glu
TTC
[ENA]
¡û
>W1810187449
PKHP01000003
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
133323
133250
-
Glu
TTC
[ENA]
¡û
>W1810187522
PKHQ01000007
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
151009
151082
+
Glu
TTC
[ENA]
¡û
>W1810240430
PPTH01000017
Actinomycetota
Arthrobacter ruber MDB1-42 [PPTH]
355596
355669
+
Glu
TTC
[ENA]
¡û
>W1810271399
PRKW01000006
Actinomycetota
Arthrobacter pityocampae Tp2 [PRKW]
218107
218034
-
Glu
TTC
[ENA]
¡û
>W1810568888
QEEY01000004
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
5444
5371
-
Glu
TTC
[ENA]
¡û
>W1810584683
QFBJ01000003
Actinomycetota
Kocuria rosea ATCC 186 [QFBJ]
262827
262754
-
Glu
TTC
[ENA]
¡û
>W1810584708
QFBK01000001
Actinomycetota
Kocuria rosea ATCC 516 [QFBK]
268379
268306
-
Glu
TTC
[ENA]
¡û
>W1810584757
QFBL01000002
Actinomycetota
Kocuria rosea ATCC 49321 [QFBL]
372140
372067
-
Glu
TTC
[ENA]
¡û
>C151034721
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
2174746
2174673
-
Glu
TTC
[Ensembl]
¡û
>C151045515
CP009211
Actinomycetota
Corynebacterium imitans DSM 44264 [CP009211]
2070091
2070016
-
Glu
TTC
[Ensembl]
¡û
>C151045599
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
1862168
1862095
-
Glu
TTC
[Ensembl]
¡û
>W1511351434
JRNG01000004
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
128531
128606
+
Glu
TTC
[ENA]
¡û
>W1511387232
JSUH01000005
Actinomycetota
Kocuria polaris CMS 76or [JSUH]
192789
192862
+
Glu
TTC
[ENA]
¡û
>W1511489250
JWSU01000004
Actinomycetota
Arthrobacter sp. L77 [JWSU]
947112
947185
+
Glu
TTC
[ENA]
¡û
>C161041045
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
2553062
2553135
+
Glu
TTC
[Ensembl]
¡û
>C161073202
CP014518
Actinomycetota
Sinomonas atrocyanea KCTC 3377 [CP014518]
399471
399544
+
Glu
TTC
[Ensembl]
¡û
>WENV057303
AACY023290891
Marine microbial communities from Global Ocean Sampling (GOS)
954
1031
+
Glu
TTC
[ENA]
>WENV057679
AACY023302674
Marine microbial communities from Global Ocean Sampling (GOS)
1278
1355
+
Glu
TTC
[ENA]
>WENV058701
AACY023338983
Marine microbial communities from Global Ocean Sampling (GOS)
1335
1258
-
Glu
TTC
[ENA]
>W1610436792
FJVG01000014
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
334
261
-
Glu
TTC
[ENA]
¡û
>W1610734527
LMLU01000001
Actinomycetota
Arthrobacter sp. Leaf234 [LMLU]
203244
203171
-
Glu
TTC
[ENA]
¡û
>W1610851101
LQBK01000042
Actinomycetota
Kocuria polaris [LQBK]
108006
107933
-
Glu
TTC
[ENA]
¡û
>W1610996153
LXGG01000008
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
1324
1251
-
Glu
TTC
[ENA]
¡û
>W1710436528
FJVG01000014
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
334
261
-
Glu
TTC
[ENA]
¡û
>W1710533061
FNQV01000003
Actinomycetota
Bowdeniella nasicola [FNQV]
88756
88681
-
Glu
TTC
[ENA]
¡û
>W1710534352
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
560037
559964
-
Glu
TTC
[ENA]
¡û
>W1710596003
FTMH01000023
Actinomycetota
Corynebacterium afermentans [FTMH]
26582
26655
+
Glu
TTC
[ENA]
¡û
>W1710598783
FTOF01000004
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
2616
2541
-
Glu
TTC
[ENA]
¡û
>W1710608189
FXAR01000010
Actinomycetota
Corynebacterium pollutisoli [FXAR]
63005
63078
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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