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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306295 (37 seq.)
>W1710934833
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
5899036
5898963
-
Glu
CTC
[ENA]
¡û
>W131165614
ARBS01000005
Actinomycetota
Longispora albida DSM 44784 [ARBS]
258702
258629
-
Glu
CTC
[ENA]
¡û
>W1711388710
MEIA01000274
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
17181
17256
+
Glu
CTC
[ENA]
¡û
>C171131322
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
8113339
8113266
-
Glu
CTC
-
¡û
>C171131323
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
8112734
8112659
-
Glu
CTC
-
¡û
>WENV183750154
PPFU01264341
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1600
1673
+
Glu
CTC
[ENA]
¢þ
>C181078606
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
8112653
8112580
-
Glu
CTC
-
¡û
>C181078607
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
8112048
8111973
-
Glu
CTC
-
¡û
>C191007437
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
1228513
1228440
-
Glu
CTC
-
¡û
>C191007438
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
1227553
1227480
-
Glu
CTC
-
¡û
>C191026492
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
7206266
7206193
-
Glu
CTC
-
¡û
>C191026493
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
7205326
7205251
-
Glu
CTC
-
¡û
>W1910547307
FZNR01000001
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
649324
649251
-
Glu
CTC
[ENA]
¡û
>W1910547308
FZNR01000001
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
648561
648486
-
Glu
CTC
[ENA]
¡û
>W1810356496
PVMZ01000002
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
699108
699181
+
Glu
CTC
[ENA]
¡û
>W1810356497
PVMZ01000002
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
700338
700413
+
Glu
CTC
[ENA]
¡û
>W1810368137
PVZG01000003
Actinomycetota
Pseudosporangium ferrugineum DSM 45348 [PVZG]
119691
119616
-
Glu
CTC
[ENA]
¡û
>W1810596609
QGGR01000003
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
295542
295469
-
Glu
CTC
[ENA]
¡û
>W1810596610
QGGR01000003
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
294754
294679
-
Glu
CTC
[ENA]
¡û
>W1810694938
QLMJ01000025
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
70623
70550
-
Glu
CTC
[ENA]
¡û
>W1810694939
QLMJ01000025
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
70413
70338
-
Glu
CTC
[ENA]
¡û
>W1511355838
JRTT01000027
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
77074
77147
+
Glu
CTC
[ENA]
¡û
>W1511355839
JRTT01000027
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
77852
77927
+
Glu
CTC
[ENA]
¡û
>W1511545104
JZKF01000016
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
145840
145913
+
Glu
CTC
[ENA]
¡û
>W1511545145
JZKF01000132
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
17083
17010
-
Glu
CTC
[ENA]
¡û
>C121001057
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
7693146
7693073
-
Glu
CTC
[Ensembl]
¡û
>C121001058
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
7692766
7692693
-
Glu
CTC
[Ensembl]
¡û
>C121007272
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
8113070
8112997
-
Glu
CTC
[Ensembl]
¡û
>C121007273
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
8112465
8112390
-
Glu
CTC
[Ensembl]
¡û
>W1610052539
BBHZ01000222
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
228
155
-
Glu
CTC
[ENA]
¡û
>W1610052577
BBIA01000297
Actinomycetota
Catenuloplanes atrovinosus JCM 9535 [BBIA]
264
191
-
Glu
CTC
[ENA]
¡û
>C131015986
CP005929
Actinomycetota
Actinoplanes sp. N902-109 [CP005929]
7906810
7906737
-
Glu
CTC
[Ensembl]
¡û
>W1610792321
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
5899036
5898963
-
Glu
CTC
[ENA]
¡û
>W1710048917
BBHZ01000222
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
228
155
-
Glu
CTC
[ENA]
¡û
>W1710048955
BBIA01000297
Actinomycetota
Catenuloplanes atrovinosus JCM 9535 [BBIA]
264
191
-
Glu
CTC
[ENA]
¡û
>W1710561029
FONV01000011
Actinomycetota
Actinoplanes philippinensis [FONV]
4131
4058
-
Glu
CTC
[ENA]
¡û
>W1710561030
FONV01000011
Actinomycetota
Actinoplanes philippinensis [FONV]
3287
3212
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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