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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306521 (54 seq.)
>W1711335870
MBRF01000002
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
125502
125430
-
Ala
GGC
[ENA]
¡û
>WENV180013665
FMSI01124357
[FMSI] soil metagenome; Soil
1594
1666
+
Ala
GGC
[ENA]
¡û
>WENV181414266
OGCL01000158
[OGCL] hot springs metagenome; Hot spring water
310
382
+
Ala
GGC
[ENA]
¡û
>C181004764
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
8123943
8123871
-
Ala
GGC
-
¡û
>C181030482
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
2450402
2450330
-
Ala
GGC
-
¡û
>C191001204
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1482443
1482515
+
Ala
GGC
-
¡û
>C191085227
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2434613
2434541
-
Ala
GGC
-
¡û
>C141007929
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
925826
925898
+
Ala
GGC
-
¡û
>W1910617533
LIRO01000135
Cyanobacteriota
Limnothrix sp. PR1529 [LIRO]
20605
20677
+
Ala
GGC
[ENA]
¡û
>W1911741962
QVFV01000013
Cyanobacteriota
Halomicronema excentricum str. Lakshadweep [QVFV]
1581
1653
+
Ala
GGC
[ENA]
¡û
>W2011306683
QVFV01000013
Cyanobacteriota
Halomicronema excentricum str. Lakshadweep [QVFV]
1581
1653
+
Ala
GGC
[ENA]
¡û
>W2011632551
SMDQ01000033
Cyanobacteriota
Nodosilinea sp. P-1105 [SMDQ]
42633
42705
+
Ala
GGC
[ENA]
¡û
>W2012349059
WJFC01000054
Cyanobacteriota
Scytonema sp. UIC 10036 [WJFC]
4727
4801
+
Ala
GGC
[ENA]
¡û
>W2110143775
JAALHA010000025
Cyanobacteriota
Aetokthonos hydrillicola Thurmond2011 [JAALHA]
19151
19223
+
Ala
GGC
[ENA]
¡û
>W2110229049
JACJPX010000012
Cyanobacteriota
Calothrix membranacea FACHB-236 [JACJPX]
131338
131411
+
Ala
GGC
[ENA]
¡û
>W2110229301
JACJQD010000006
Cyanobacteriota
Limnothrix sp. FACHB-1083 [JACJQD]
65794
65866
+
Ala
GGC
[ENA]
¡û
>W2110229335
JACJQE010000005
Cyanobacteriota
Limnothrix sp. FACHB-1088 [JACJQE]
65768
65840
+
Ala
GGC
[ENA]
¡û
>W2110229374
JACJQF010000017
Cyanobacteriota
Calothrix sp. FACHB-168 [JACJQF]
150721
150794
+
Ala
GGC
[ENA]
¡û
>W2110229467
JACJQG010000070
Cyanobacteriota
Calothrix anomala FACHB-343 [JACJQG]
29462
29389
-
Ala
GGC
[ENA]
¡û
>W2110229524
JACJQH010000046
Cyanobacteriota
Calothrix parietina FACHB-288 [JACJQH]
24220
24293
+
Ala
GGC
[ENA]
¡û
>W2110230595
JACJRC010000029
Cyanobacteriota
Alkalinema sp. FACHB-956 [JACJRC]
27630
27702
+
Ala
GGC
[ENA]
¡û
>W2110230641
JACJRD010000043
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
80142
80216
+
Ala
GGC
[ENA]
¡û
>W2110230686
JACJRE010000029
Cyanobacteriota
Tolypothrix sp. FACHB-123 [JACJRE]
3536
3463
-
Ala
GGC
[ENA]
¡û
>W2110232432
JACJSN010000008
Cyanobacteriota
Limnothrix sp. FACHB-881 [JACJSN]
132833
132761
-
Ala
GGC
[ENA]
¡û
>W2110232468
JACJSO010000008
Cyanobacteriota
Limnothrix sp. FACHB-708 [JACJSO]
65982
66054
+
Ala
GGC
[ENA]
¡û
>W2110232505
JACJSP010000007
Cyanobacteriota
Limnothrix sp. FACHB-406 [JACJSP]
65982
66054
+
Ala
GGC
[ENA]
¡û
>W2110262207
JACSWC010000422
Cyanobacteriota
Halomicronema sp. CCY15110 [JACSWC]
41909
41981
+
Ala
GGC
[ENA]
¡û
>W2110311849
JADEWX010000042
Cyanobacteriota
Nodosilinea sp. LEGE 07088 [JADEWX]
3596
3668
+
Ala
GGC
[ENA]
¡û
>W2110312556
JADEXL010000297
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
6206
6134
-
Ala
GGC
[ENA]
¡û
>C211280922
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
622288
622216
-
Ala
GGC
-
¡û
>C231097638
CP063785
Cyanobacteriota
Tolypothrix sp. PCC 7712 [CP063785]
2054353
2054425
+
Ala
GGC
-
¡û
>C231396160
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
787174
787246
+
Ala
GGC
-
¡û
>C241293671
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
619660
619588
-
Ala
GGC
-
¡û
>C241293693
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
2026527
2026599
+
Ala
GGC
-
¡û
>C241293747
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
617290
617218
-
Ala
GGC
-
¡û
>C241316059
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
613204
613132
-
Ala
GGC
-
¡û
>C241316173
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
617910
617838
-
Ala
GGC
-
¡û
>C241316211
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
628745
628673
-
Ala
GGC
-
¡û
>C241316287
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
628884
628812
-
Ala
GGC
-
¡û
>C241316325
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
628884
628812
-
Ala
GGC
-
¡û
>C241316363
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
628884
628812
-
Ala
GGC
-
¡û
>C241316401
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
621072
621000
-
Ala
GGC
-
¡û
>C241316439
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
621142
621070
-
Ala
GGC
-
¡û
>C241316477
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
621073
621001
-
Ala
GGC
-
¡û
>C241316515
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
627498
627426
-
Ala
GGC
-
¡û
>C241316591
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
617290
617218
-
Ala
GGC
-
¡û
>C241316651
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
2026527
2026599
+
Ala
GGC
-
¡û
>C241316689
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
2026527
2026599
+
Ala
GGC
-
¡û
>W1511013862
JHEG02000048
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
1071443
1071516
+
Ala
GGC
[ENA]
¡û
>W1511400858
JTHE01000274
Cyanobacteriota
Lyngbya confervoides BDU141951 [JTHE]
2249421
2249349
-
Ala
GGC
[ENA]
¡û
>W1511401877
JTJD01000271
Cyanobacteriota
Aphanocapsa montana BDHKU210001 [JTJD]
2253162
2253090
-
Ala
GGC
[ENA]
¡û
>W1610003526
AGCR01000015
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
6249
6177
-
Ala
GGC
[ENA]
¡û
>W1611066577
MBRF01000002
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
125502
125430
-
Ala
GGC
[ENA]
¡û
>W1710004146
AGCR01000015
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
6249
6177
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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