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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306534 (16 seq.)
>W1711510629
MLBG01000048
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
19642
19717
+
Thr
GGT
[ENA]
¡û
>W141028013
ALAO01000394
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
5147
5222
+
Thr
GGT
[ENA]
¡û
>WENV181410228
OGCI01001880
[OGCI] hot springs metagenome; Hot spring water
1262
1190
-
Thr
GGT
[ENA]
¡û
>W141279159
JAGC01000005
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
600326
600251
-
Thr
GGT
[ENA]
¡û
>WENV183516090
OMKS01129662
[OMKS] sediment metagenome; hot spring sediment
512
587
+
Thr
GGT
[ENA]
¡û
>WENV170558659
CXWL01083091
[CXWL] groundwater metagenome; biofilm material
200
273
+
Thr
GGT
[ENA]
¡û
>WENV170683451
LFIK01011826
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
1548
1473
-
Thr
GGT
[ENA]
¡û
>WENV170715181
LNQE01000233
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
8491
8566
+
Thr
GGT
[ENA]
¡û
>C191045049
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
1492965
1493040
+
Thr
GGT
-
¡û
>C09104121
AP010904
Thermodesulfobacteriota
Solidesulfovibrio magneticus RS-1 [AP010904]
3539034
3538959
-
Thr
GGT
[Ensembl]
¡û
>W2010470439
JAAGRQ010000084
Thermodesulfobacteriota
Desulfovibrio sulfodismutans DSM 3696 [JAAGRQ]
283
208
-
Thr
GGT
[ENA]
¡û
>W2012468809
WVUD01000013
Thermodesulfobacteriota
Desulfovibrio aerotolerans DSM 16695 [WVUD]
9987
10062
+
Thr
GGT
[ENA]
¡û
>C241097146
CP045504
Thermodesulfobacteriota
Desulfolutivibrio sulfodismutans DSM 3696 [CP045504]
198009
198084
+
Thr
GGT
-
¡û
>C241097228
CP045506
Thermodesulfobacteriota
Desulfolutivibrio sulfoxidireducens DSM 106783 [CP045506]
2453863
2453788
-
Thr
GGT
-
¡û
>C241097258
CP045508
Thermodesulfobacteriota
Desulfolutivibrio sulfoxidireducens DSM 107105 [CP045508]
1717368
1717443
+
Thr
GGT
-
¡û
>W1511365654
JSEH01000029
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
11524
11599
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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