This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306578 (128 seq.)
>WENV180227358
OBBU01021447
[OBBU] human gut metagenome; human gut
460
536
+
Met
CAT
[ENA]
¡û
>WENV180282168
OBIB01004637
[OBIB] human gut metagenome; human gut
1435
1359
-
Met
CAT
[ENA]
¡û
>WENV180340488
OBLI01026567
[OBLI] pig gut metagenome; faeces
245
169
-
Met
CAT
[ENA]
¡û
>WENV180348584
OBLO01008191
[OBLO] metagenome; feces
3115
3039
-
Met
CAT
[ENA]
¡û
>WENV180469312
OBYM01001400
[OBYM] human gut metagenome; faeces
2423
2347
-
Met
CAT
[ENA]
¡û
>WENV180469393
OBYM01001992
[OBYM] human gut metagenome; faeces
2112
2036
-
Met
CAT
[ENA]
¡û
>WENV181418346
OGCM01003148
[OGCM] human gut metagenome; human gut
7590
7514
-
Met
CAT
[ENA]
¡û
>WENV181419618
OGCN01000257
[OGCN] human gut metagenome; human gut
57451
57527
+
Met
CAT
[ENA]
¡û
>WENV181420500
OGCN01003044
[OGCN] human gut metagenome; human gut
3153
3077
-
Met
CAT
[ENA]
¡û
>WENV181421188
OGCN01018962
[OGCN] human gut metagenome; human gut
800
876
+
Met
CAT
[ENA]
¡û
>WENV181431557
OGDC01000677
[OGDC] metagenome; Human gut stool
7208
7284
+
Met
CAT
[ENA]
¡û
>WENV181438314
OGDI01005382
[OGDI] metagenome; Human gut stool
500
576
+
Met
CAT
[ENA]
¡û
>WENV181452148
OGDZ01000046
[OGDZ] metagenome; Human gut stool
4166
4090
-
Met
CAT
[ENA]
¡û
>WENV181470190
OGEU01001726
[OGEU] metagenome; Human gut stool
12490
12414
-
Met
CAT
[ENA]
¡û
>WENV181483448
OGFK01004755
[OGFK] metagenome; Human gut stool
4989
5065
+
Met
CAT
[ENA]
¡û
>WENV181514287
OGGV01001771
[OGGV] metagenome; Human gut stool
1007
931
-
Met
CAT
[ENA]
¡û
>WENV181538355
OGHY01006131
[OGHY] metagenome; Human gut stool
1397
1321
-
Met
CAT
[ENA]
¡û
>WENV181542394
OGIE01001395
[OGIE] metagenome; Human gut stool
26674
26598
-
Met
CAT
[ENA]
¡û
>WENV181554793
OGIS01006188
[OGIS] metagenome; Human gut stool
674
598
-
Met
CAT
[ENA]
¡û
>WENV181562873
OGJG01000188
[OGJG] metagenome; Human gut stool
16038
15962
-
Met
CAT
[ENA]
¡û
>WENV181578925
OGJY01007973
[OGJY] metagenome; Human gut stool
240
164
-
Met
CAT
[ENA]
¡û
>WENV181584384
OGKE01001171
[OGKE] metagenome; Human gut stool
17733
17809
+
Met
CAT
[ENA]
¡û
>WENV181588574
OGKJ01000046
[OGKJ] metagenome; Human gut stool
25978
26054
+
Met
CAT
[ENA]
¡û
>WENV181598123
OGLA01001194
[OGLA] metagenome; Human gut stool
723
799
+
Met
CAT
[ENA]
¡û
>WENV181616596
OGLZ01000193
[OGLZ] metagenome; Human gut stool
45608
45532
-
Met
CAT
[ENA]
¡û
>WENV181617430
OGMA01018802
[OGMA] metagenome; Human gut stool
417
341
-
Met
CAT
[ENA]
¡û
>WENV181636246
OGMZ01001378
[OGMZ] metagenome; Human gut stool
6572
6496
-
Met
CAT
[ENA]
¡û
>WENV181768924
OGRA01007838
[OGRA] human gut metagenome; faeces
2407
2483
+
Met
CAT
[ENA]
¡û
>WENV181782099
OGRK01002994
[OGRK] human gut metagenome; faeces
2906
2982
+
Met
CAT
[ENA]
¡û
>WENV181867824
OGWW01002644
[OGWW] human gut metagenome; faeces
599
523
-
Met
CAT
[ENA]
¡û
>WENV181879892
OGXF01003502
[OGXF] human gut metagenome; faeces
1799
1723
-
Met
CAT
[ENA]
¡û
>WENV181898473
OGXT01005480
[OGXT] human gut metagenome; faeces
4027
4103
+
Met
CAT
[ENA]
¡û
>WENV181898619
OGXT01008526
[OGXT] human gut metagenome; faeces
1331
1255
-
Met
CAT
[ENA]
¡û
>WENV181936393
OGYV01001091
[OGYV] human gut metagenome; faeces
7105
7029
-
Met
CAT
[ENA]
¡û
>WENV181939408
OGYX01001346
[OGYX] human gut metagenome; faeces
6266
6342
+
Met
CAT
[ENA]
¡û
>WENV181957347
OGZL01005560
[OGZL] human gut metagenome; faeces
5692
5768
+
Met
CAT
[ENA]
¡û
>WENV181957591
OGZL01010535
[OGZL] human gut metagenome; faeces
2555
2479
-
Met
CAT
[ENA]
¡û
>WENV181981650
OHAG01004341
[OHAG] human gut metagenome; faeces
3355
3279
-
Met
CAT
[ENA]
¡û
>WENV182047006
OHDW01005094
[OHDW] human gut metagenome; feces
1337
1413
+
Met
CAT
[ENA]
¡û
>WENV182239704
OHSB01012716
[OHSB] human gut metagenome; feces
692
616
-
Met
CAT
[ENA]
¡û
>WENV182289713
OHVW01006776
[OHVW] human gut metagenome; feces
947
871
-
Met
CAT
[ENA]
¡û
>WENV182290152
OHVX01002583
[OHVX] human gut metagenome; feces
265
341
+
Met
CAT
[ENA]
¡û
>WENV182294153
OHWD01001021
[OHWD] human gut metagenome; feces
1028
952
-
Met
CAT
[ENA]
¡û
>WENV182303164
OHWU01002210
[OHWU] human gut metagenome; feces
2076
2152
+
Met
CAT
[ENA]
¡û
>WENV182305133
OHXB01000816
[OHXB] human gut metagenome; feces
5314
5390
+
Met
CAT
[ENA]
¡û
>WENV182309256
OHXK01000135
[OHXK] human gut metagenome; feces
36415
36339
-
Met
CAT
[ENA]
¡û
>WENV182321309
OHYL01005946
[OHYL] human gut metagenome; feces
801
877
+
Met
CAT
[ENA]
¡û
>WENV182338502
OHZZ01011606
[OHZZ] human gut metagenome; feces
168
92
-
Met
CAT
[ENA]
¡û
>WENV182345699
OIAR01002309
[OIAR] human gut metagenome; feces
256
332
+
Met
CAT
[ENA]
¡û
>WENV182349045
OIBA01003683
[OIBA] human gut metagenome; feces
346
270
-
Met
CAT
[ENA]
¡û
>WENV182351008
OIBG01001713
[OIBG] human gut metagenome; feces
3777
3853
+
Met
CAT
[ENA]
¡û
>WENV182371809
OICV01000220
[OICV] human gut metagenome; feces
28147
28071
-
Met
CAT
[ENA]
¡û
>WENV182373584
OICZ01007357
[OICZ] human gut metagenome; feces
511
435
-
Met
CAT
[ENA]
¡û
>WENV182373834
OIDA01000112
[OIDA] human gut metagenome; feces
42379
42303
-
Met
CAT
[ENA]
¡û
>WENV182379614
OIDM01003382
[OIDM] human gut metagenome; feces
717
641
-
Met
CAT
[ENA]
¡û
>WENV182413984
OIFY01034160
[OIFY] human gut metagenome; human gut
501
425
-
Met
CAT
[ENA]
¡û
>WENV182512324
OIWL01003327
[OIWL] human gut metagenome; faeces
9934
10010
+
Met
CAT
[ENA]
¡û
>WENV182525753
OIWT01004184
[OIWT] human gut metagenome; faeces
9142
9066
-
Met
CAT
[ENA]
¡û
>WENV182599507
OJJE01019745
[OJJE] metagenome; faeces
131
207
+
Met
CAT
[ENA]
¡û
>WENV182599545
OJJE01026486
[OJJE] metagenome; faeces
392
468
+
Met
CAT
[ENA]
¡û
>WENV182626673
OJKP01018501
[OJKP] metagenome; faeces
1439
1363
-
Met
CAT
[ENA]
¡û
>WENV182630039
OJKW01000027
[OJKW] metagenome; faeces
105382
105458
+
Met
CAT
[ENA]
¡û
>WENV182634409
OJKY01009831
[OJKY] metagenome; faeces
1605
1529
-
Met
CAT
[ENA]
¡û
>WENV182637798
OJLA01003935
[OJLA] metagenome; faeces
4642
4718
+
Met
CAT
[ENA]
¡û
>WENV182638896
OJLA01028866
[OJLA] metagenome; faeces
1726
1650
-
Met
CAT
[ENA]
¡û
>WENV182972482
OKXI01042438
[OKXI] human gut metagenome; human gut
265
341
+
Met
CAT
[ENA]
¡û
>WENV183064623
OLIH01024493
[OLIH] metagenome; faeces
194
118
-
Met
CAT
[ENA]
¡û
>WENV183069864
OLIR01004804
[OLIR] metagenome; faeces
921
845
-
Met
CAT
[ENA]
¡û
>WENV183105765
OLNL01000455
[OLNL] human gut metagenome; faeces
28015
27939
-
Met
CAT
[ENA]
¡û
>WENV183123118
OLNW01000281
[OLNW] human gut metagenome; faeces
27362
27286
-
Met
CAT
[ENA]
¡û
>WENV183157992
OLOT01010345
[OLOT] human gut metagenome; faeces
1423
1347
-
Met
CAT
[ENA]
¡û
>WENV183167602
OLOZ01000403
[OLOZ] human gut metagenome; faeces
36693
36617
-
Met
CAT
[ENA]
¡û
>WENV183198713
OLPV01003927
[OLPV] human gut metagenome; faeces
247
171
-
Met
CAT
[ENA]
¡û
>WENV183231591
OLQU01000240
[OLQU] human gut metagenome; faeces
13568
13644
+
Met
CAT
[ENA]
¡û
>WENV183233541
OLQV01001516
[OLQV] human gut metagenome; faeces
16653
16729
+
Met
CAT
[ENA]
¡û
>WENV183255482
OLRK01000343
[OLRK] human gut metagenome; faeces
38569
38645
+
Met
CAT
[ENA]
¡û
>WENV183375414
OLYA01000833
[OLYA] human gut metagenome; feces
8852
8928
+
Met
CAT
[ENA]
¡û
>WENV183379962
OLYF01000943
[OLYF] human gut metagenome; feces
203
127
-
Met
CAT
[ENA]
¡û
>WENV183380618
OLYI01003627
[OLYI] human gut metagenome; feces
3145
3221
+
Met
CAT
[ENA]
¡û
>WENV183390783
OLZC01002873
[OLZC] human gut metagenome; feces
3768
3844
+
Met
CAT
[ENA]
¡û
>WENV183427271
OMBM01023427
[OMBM] human gut metagenome; feces
240
164
-
Met
CAT
[ENA]
¡û
>WENV183468371
OMEG01004960
[OMEG] human gut metagenome; feces
54
130
+
Met
CAT
[ENA]
¡û
>WENV183479019
OMFF01000564
[OMFF] human gut metagenome; feces
1162
1086
-
Met
CAT
[ENA]
¡û
>WENV183490668
OMGC01001655
[OMGC] human gut metagenome; feces
638
562
-
Met
CAT
[ENA]
¡û
>WENV183494499
OMGK01001953
[OMGK] human gut metagenome; human gut
1323
1247
-
Met
CAT
[ENA]
¡û
>WENV183518367
OMNQ01003331
[OMNQ] human gut metagenome; feces
3651
3727
+
Met
CAT
[ENA]
¡û
>WENV183527157
ONZW01000063
[ONZW] human gut metagenome; human gut
70010
69934
-
Met
CAT
[ENA]
¡û
>WENV183531503
OOAC01001522
[OOAC] human gut metagenome; human gut
10582
10658
+
Met
CAT
[ENA]
¡û
>WENV183531572
OOAC01001978
[OOAC] human gut metagenome; human gut
3091
3167
+
Met
CAT
[ENA]
¡û
>WENV183536490
OOAG01005330
[OOAG] human gut metagenome; human gut
6362
6438
+
Met
CAT
[ENA]
¡û
>WENV183540696
OOAK01000214
[OOAK] human gut metagenome; human gut
16403
16479
+
Met
CAT
[ENA]
¡û
>WENV183558347
OOBR01000206
[OOBR] human gut metagenome; human gut
25884
25960
+
Met
CAT
[ENA]
¡û
>WENV183568286
OOCB01002689
[OOCB] human gut metagenome; human gut
9968
10044
+
Met
CAT
[ENA]
¡û
>WENV183570171
OOCD01000144
[OOCD] human gut metagenome; human gut
12485
12409
-
Met
CAT
[ENA]
¡û
>WENV183570387
OOCD01000935
[OOCD] human gut metagenome; human gut
5636
5560
-
Met
CAT
[ENA]
¡û
>WENV183612659
OODU01000440
[OODU] human gut metagenome; human gut
12048
11972
-
Met
CAT
[ENA]
¡û
>WENV183632207
OOIF01001623
[OOIF] human gut metagenome; human gut
5457
5381
-
Met
CAT
[ENA]
¡û
>WENV183761857
PPYE01263149
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
666
590
-
Met
CAT
[ENA]
¡û
>WENV183780026
PPYF01158245
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10927
11003
+
Met
CAT
[ENA]
¡û
>WENV170037300
CDYQ01006556
[CDYQ] gut metagenome; human stools
1089
1165
+
Met
CAT
[ENA]
¡û
>WENV170040028
CDYS01014226
[CDYS] gut metagenome; human stools
6325
6249
-
Met
CAT
[ENA]
¡û
>WENV170043902
CDYU01052243
[CDYU] gut metagenome; human stools
13305
13381
+
Met
CAT
[ENA]
¡û
>WENV170046307
CDYY01031555
[CDYY] gut metagenome; human stools
4599
4523
-
Met
CAT
[ENA]
¡û
>WENV170080365
CDZW01043608
[CDZW] gut metagenome; human stools
324
400
+
Met
CAT
[ENA]
¡û
>WENV170081653
CDZY01023355
[CDZY] gut metagenome; human stools
46756
46680
-
Met
CAT
[ENA]
¡û
>WENV170082599
CEAA01001848
[CEAA] gut metagenome; human stools
16840
16764
-
Met
CAT
[ENA]
¡û
>WENV170084892
CEAB01033024
[CEAB] gut metagenome; human stools
21707
21783
+
Met
CAT
[ENA]
¡û
>WENV170097743
CEAM01003564
[CEAM] gut metagenome; human stools
77
1
-
Met
CAT
[ENA]
¡û
>WENV170108210
CECA01017869
[CECA] gut metagenome; human stools
848
924
+
Met
CAT
[ENA]
¡û
>WENV170109632
CECB01004267
[CECB] gut metagenome; human stools
1852
1928
+
Met
CAT
[ENA]
¡û
>W1911074894
NMTY01000016
Bacillota
Faecalibacterium prausnitzii CNCM I 4575 [NMTY]
272595
272671
+
Met
CAT
[ENA]
¡û
>W1911136090
NOUV01000004
Bacillota
Faecalibacterium prausnitzii AHMP21 [NOUV]
61508
61432
-
Met
CAT
[ENA]
¡û
>W1810271713
PRLC01000011
Bacillota
Faecalibacterium hattorii APC922/41-1 [PRLC]
37318
37242
-
Met
CAT
[ENA]
¡û
>W1810874493
QUFG01000010
Bacillota
Faecalibacterium sp. AF28-13AC [QUFG]
35648
35724
+
Met
CAT
[ENA]
¡û
>W2010248346
CABIWV020000002
Bacillota
Faecalibacterium prausnitzii [CABIWV]
314511
314587
+
Met
CAT
[ENA]
¡û
>W2010257854
CABJDF020000010
Bacillota
Faecalibacterium prausnitzii [CABJDF]
35648
35724
+
Met
CAT
[ENA]
¡û
>W2011004218
NMTY01000016
Bacillota
Faecalibacterium prausnitzii CNCM I 4575 [NMTY]
272595
272671
+
Met
CAT
[ENA]
¡û
>W2011012795
NOUV01000004
Bacillota
Faecalibacterium prausnitzii AHMP21 [NOUV]
61508
61432
-
Met
CAT
[ENA]
¡û
>W2110419015
JAEKBX010000002
Bacillota
Faecalibacterium prausnitzii Fp4 [JAEKBX]
2936399
2936475
+
Met
CAT
[ENA]
¡û
>W2110520224
JAFREH010000008
Bacillota
Faecalibacterium sp. Marseille-Q3530 [JAFREH]
1845
1921
+
Met
CAT
[ENA]
¡û
>C211205298
CP065377
Bacillota
Faecalibacterium prausnitzii Fp77 [CP065377]
2924620
2924696
+
Met
CAT
-
¡û
>C211205358
CP065378
Bacillota
Faecalibacterium prausnitzii Fp45 [CP065378]
2936022
2936098
+
Met
CAT
-
¡û
>C211205418
CP065379
Bacillota
Faecalibacterium prausnitzii Fp40 [CP065379]
2936502
2936578
+
Met
CAT
-
¡û
>C231510381
CP107211
Bacillota
Oscillospiraceae bacterium [CP107211]
145245
145321
+
Met
CAT
-
¡û
>C231604302
CP117963
Bacillota
Faecalibacterium prausnitzii AP34BHI [CP117963]
274511
274587
+
Met
CAT
-
¡û
>W1610099418
CYYL01000002
Bacillota
Faecalibacterium prausnitzii [CYYL]
314511
314587
+
Met
CAT
[ENA]
¡û
>WENV086956
BABG01031819
Gut microbiome of Human (healthy human sample In-R, Adult, Female)
247
169
-
Met
CAT
[ENA]
>W1710102173
CYYL01000002
Bacillota
Faecalibacterium prausnitzii [CYYL]
314511
314587
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK