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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306654 (126 seq.)
>W1711183407
LWLA01000012
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
490425
490349
-
Thr
TGT
[ENA]
¡û
>W1711427918
MIGA01000045
Actinomycetota
Streptomyces platensis [MIGA]
43835
43761
-
Thr
TGT
[ENA]
¡û
>W1711455932
MJAJ01000024
Actinomycetota
Streptomyces sp. LUP30 [MJAJ]
18933
18857
-
Thr
TGT
[ENA]
¡û
>W1711738121
MUAY01000327
Actinomycetota
Streptomyces angustmyceticus [MUAY]
2891
2965
+
Thr
TGT
[ENA]
¡û
>C171058154
CP017157
Actinomycetota
Streptomyces lydicus 103 [CP017157]
7484212
7484138
-
Thr
TGT
-
¡û
>C171094657
CP019457
Actinomycetota
Streptomyces lydicus GS93 [CP019457]
5057080
5057154
+
Thr
TGT
-
¡û
>C171099639
CP019779
Actinomycetota
Streptomyces sp. MOE7 [CP019779]
5149951
5150025
+
Thr
TGT
-
¡û
>W131160431
AQWO01000007
Actinomycetota
Streptomyces sp. FxanaC1 [AQWO]
286284
286210
-
Thr
TGT
[ENA]
¡û
>W131181541
AROY01001956
Actinomycetota
Streptomyces noursei CCRC 11814 [AROY]
1476
1550
+
Thr
TGT
[ENA]
¡û
>WENV180023336
FTHV01000472
[FTHV] metagenome; soil
7352
7278
-
Thr
TGT
[ENA]
¡û
>WENV180023466
FTHY01000434
[FTHY] metagenome; soil
7423
7349
-
Thr
TGT
[ENA]
¡û
>WENV180024816
FTIJ01066810
[FTIJ] metagenome; soil
266
340
+
Thr
TGT
[ENA]
¡û
>WENV180033711
FTKL01028964
[FTKL] metagenome; soil
16766
16692
-
Thr
TGT
[ENA]
¡û
>W141153076
AXDB02000086
Actinomycetota
Streptomyces noursei PD-1 [AXDB]
52895
52969
+
Thr
TGT
[ENA]
¡û
>WENV170565571
FJVZ01000337
[FJVZ] metagenome; soil
8273
8347
+
Thr
TGT
[ENA]
¡û
>C181127671
CP026094
Actinomycetota
Streptomyces noursei CK-15 [CP026094]
5294409
5294483
+
Thr
TGT
-
¡û
>C181179777
CP029541
Actinomycetota
Streptomyces sp. NEAU-S7GS2 [CP029541]
5737815
5737889
+
Thr
TGT
-
¡û
>C191062870
CP029042
Actinomycetota
Streptomyces lydicus WYEC 108 [CP029042]
5454354
5454428
+
Thr
TGT
-
¡û
>W141757922
JNYG01001118
Actinomycetota
Streptomyces decoyicus [JNYG]
10473
10397
-
Thr
TGT
[ENA]
¡û
>W141759001
JNZA01000006
Actinomycetota
Streptomyces lydicus [JNZA]
116042
116116
+
Thr
TGT
[ENA]
¡û
>W141761709
JOAX01000010
Actinomycetota
Streptomyces ochraceiscleroticus [JOAX]
56836
56912
+
Thr
TGT
[ENA]
¡û
>W141762299
JOBH01000005
Actinomycetota
Streptomyces violens [JOBH]
313321
313245
-
Thr
TGT
[ENA]
¡û
>W141766430
JODY01000046
Actinomycetota
Streptomyces catenulae [JODY]
15356
15282
-
Thr
TGT
[ENA]
¡û
>W141767141
JOEL01000010
Actinomycetota
Streptomyces celluloflavus [JOEL]
115245
115319
+
Thr
TGT
[ENA]
¡û
>W141770041
JOGF01001065
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
526
450
-
Thr
TGT
[ENA]
¡û
>W141771337
JOHB01000062
Actinomycetota
Streptomyces sp. NRRL S-1813 [JOHB]
10585
10511
-
Thr
TGT
[ENA]
¡û
>W1910128969
BHXC01000007
Actinomycetota
Streptomyces albulus NBRC 14147 [BHXC]
92064
92138
+
Thr
TGT
[ENA]
¡û
>W1910596042
LACP01000072
Actinomycetota
Streptomyces sp. SceaMP-e96 [LACP]
1667
1593
-
Thr
TGT
[ENA]
¡û
>W1910873838
NDXL01000002
Actinomycetota
Streptomyces kasugaensis BCRC 12349 [NDXL]
1274236
1274310
+
Thr
TGT
[ENA]
¡û
>W1911083819
NNBP01000028
Actinomycetota
Streptomyces sp. CB02959 [NNBP]
95235
95161
-
Thr
TGT
[ENA]
¡û
>W1911243863
NSGX01000001
Actinomycetota
Streptomyces sp. 2321.6 [NSGX]
4736790
4736864
+
Thr
TGT
[ENA]
¡û
>W1911765934
QXDE01000001
Actinomycetota
Streptomyces sp. 2233.2 [QXDE]
2511376
2511302
-
Thr
TGT
[ENA]
¡û
>W1810072386
PEFH01000003
Actinomycetota
Streptomyces sp. 76 [PEFH]
1152088
1152014
-
Thr
TGT
[ENA]
¡û
>W1810072427
PEFI01000001
Actinomycetota
Streptomyces sp. 2233.5 [PEFI]
3199130
3199056
-
Thr
TGT
[ENA]
¡û
>W1810089172
PGEO01000001
Actinomycetota
Streptomyces sp. 2333.5 [PGEO]
4680719
4680793
+
Thr
TGT
[ENA]
¡û
>W1810869804
QUAC01000143
Actinomycetota
Streptomyces inhibens NEAU-D10 [QUAC]
10279
10205
-
Thr
TGT
[ENA]
¡û
>C151013660
CP006871
Actinomycetota
Streptomyces noursei ZPM [CP006871]
5762629
5762703
+
Thr
TGT
[Ensembl]
¡û
>C151028681
CP007574
Actinomycetota
Streptomyces noursei NK660 [CP007574]
5381358
5381432
+
Thr
TGT
[Ensembl]
¡û
>W2010081709
BHXC01000007
Actinomycetota
Streptomyces albulus NBRC 14147 [BHXC]
92064
92138
+
Thr
TGT
[ENA]
¡û
>W2010132582
BLAG01000010
Actinomycetota
Streptomyces angustmyceticus NBRC 3934 [BLAG]
400420
400346
-
Thr
TGT
[ENA]
¡û
>W2010137166
BLIN01000002
Actinomycetota
Streptomyces caniferus NBRC 15389 [BLIN]
1320621
1320547
-
Thr
TGT
[ENA]
¡û
>W2010137282
BLIO01000001
Actinomycetota
Streptomyces glebosus NBRC 13786 [BLIO]
3491306
3491232
-
Thr
TGT
[ENA]
¡û
>W2010137336
BLIP01000001
Actinomycetota
Streptomyces libani subsp. libani NBRC 13452 [BLIP]
3513281
3513207
-
Thr
TGT
[ENA]
¡û
>W2010137407
BLIQ01000004
Actinomycetota
Streptomyces libani subsp. rufus NBRC 15424 [BLIQ]
560853
560927
+
Thr
TGT
[ENA]
¡û
>W2010137465
BLIR01000001
Actinomycetota
Streptomyces tubercidicus NBRC 13090 [BLIR]
2982145
2982071
-
Thr
TGT
[ENA]
¡û
>W2010766385
LACP01000072
Actinomycetota
Streptomyces sp. SceaMP-e96 [LACP]
1667
1593
-
Thr
TGT
[ENA]
¡û
>W2010942541
NDXL01000002
Actinomycetota
Streptomyces kasugaensis BCRC 12349 [NDXL]
1274236
1274310
+
Thr
TGT
[ENA]
¡û
>W2011007212
NNBP01000028
Actinomycetota
Streptomyces sp. CB02959 [NNBP]
95235
95161
-
Thr
TGT
[ENA]
¡û
>W2011069222
NSGX01000001
Actinomycetota
Streptomyces sp. 2321.6 [NSGX]
4736790
4736864
+
Thr
TGT
[ENA]
¡û
>W2011324377
QXDE01000001
Actinomycetota
Streptomyces sp. 2233.2 [QXDE]
2511376
2511302
-
Thr
TGT
[ENA]
¡û
>W2011354091
RAPL01000001
Actinomycetota
Streptomyces sp. 2112.5 [RAPL]
4753184
4753258
+
Thr
TGT
[ENA]
¡û
>W2011411783
RDTC01000001
Actinomycetota
Streptomyces lydicus SW_ACT1 [RDTC]
3094000
3093926
-
Thr
TGT
[ENA]
¡û
>W2011411796
RDTD01000001
Actinomycetota
Streptomyces lydicus ATCC 25470 [RDTD]
327813
327887
+
Thr
TGT
[ENA]
¡û
>W2011411911
RDTE01000003
Actinomycetota
Streptomyces lydicus ATCC 31975 [RDTE]
3726505
3726431
-
Thr
TGT
[ENA]
¡û
>W2011544906
SDIF01000016
Actinomycetota
Streptomyces sioyaensis DSM 40032 [SDIF]
1382
1308
-
Thr
TGT
[ENA]
¡û
>W2011544972
SDIG01000032
Actinomycetota
Streptomyces sp. TM32 [SDIG]
40814
40888
+
Thr
TGT
[ENA]
¡û
>W2011603039
SIXH01000237
Actinomycetota
Streptomyces sp. AM-2504 [SIXH]
10723
10797
+
Thr
TGT
[ENA]
¡û
>W2011696741
SUMB01000005
Actinomycetota
Streptomyces sp. jys28 [SUMB]
102439
102513
+
Thr
TGT
[ENA]
¡û
>W2012034831
VHQN01000373
Actinomycetota
Streptomyces sp. WAC01526 [VHQN]
2534
2608
+
Thr
TGT
[ENA]
¡û
>W2012065697
VJZD01000158
Actinomycetota
Streptomyces adustus NBRC 109810 [VJZD]
17411
17486
+
Thr
TGT
[ENA]
¡û
>W2012071126
VKJP01000030
Actinomycetota
Streptomyces sp. MZ03-37 [VKJP]
15511
15437
-
Thr
TGT
[ENA]
¡û
>W2012071559
VKLS01000032
Actinomycetota
Streptomyces sp. MZ03-48 [VKLS]
7415
7341
-
Thr
TGT
[ENA]
¡û
>W2012106574
VOQD01000010
Actinomycetota
Streptomyces sp. ISID311 [VOQD]
151926
151852
-
Thr
TGT
[ENA]
¡û
>W2012472083
WWGG01000054
Actinomycetota
Streptomyces sp. SID8375 [WWGG]
286284
286210
-
Thr
TGT
[ENA]
¡û
>W2012473716
WWHH01000185
Actinomycetota
Streptomyces sp. SID7805 [WWHH]
115245
115319
+
Thr
TGT
[ENA]
¡û
>W2012476147
WWIU01000068
Actinomycetota
Streptomyces sp. SID4951 [WWIU]
1667
1593
-
Thr
TGT
[ENA]
¡û
>W2012476242
WWIW01000522
Actinomycetota
Streptomyces sp. SID4948 [WWIW]
38821
38895
+
Thr
TGT
[ENA]
¡û
>W2110032608
BMND01000023
Actinomycetota
Streptomyces kronopolitis CGMCC 4.7323 [BMND]
44610
44536
-
Thr
TGT
[ENA]
¡û
>W2110038563
BMRP01000011
Actinomycetota
Streptomyces albospinus JCM 3399 [BMRP]
112542
112616
+
Thr
TGT
[ENA]
¡û
>W2110039410
BMSD01000003
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
156424
156349
-
Thr
TGT
[ENA]
¡û
>W2110040419
BMSS01000016
Actinomycetota
Streptomyces libani subsp. libani JCM 4322 [BMSS]
103347
103421
+
Thr
TGT
[ENA]
¡û
>W2110042747
BMUE01000011
Actinomycetota
Streptomyces lucensis JCM 4490 [BMUE]
106463
106537
+
Thr
TGT
[ENA]
¡û
>W2110053287
BNBO01000038
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
3148
3222
+
Thr
TGT
[ENA]
¡û
>W2110053958
BNCA01000009
Actinomycetota
Streptomyces glebosus JCM 4954 [BNCA]
47048
47122
+
Thr
TGT
[ENA]
¡û
>W2110197285
JABZEL010000009
Actinomycetota
Streptomyces sioyaensis B-5408 [JABZEL]
110250
110176
-
Thr
TGT
[ENA]
¡û
>C211316007
CP072931
Actinomycetota
Streptomyces auratus AGR0001 [CP072931]
4621179
4621253
+
Thr
TGT
-
¡û
>W1510012760
BBNO01000001
Actinomycetota
Streptomyces lydicamycinicus NBRC 110027 [BBNO]
73589
73663
+
Thr
TGT
[ENA]
¡û
>W2110734638
JAJCXB010000014
Actinomycetota
Streptomyces sp. SF28 [JAJCXB]
83339
83265
-
Thr
TGT
[ENA]
¡û
>C211394917
CP082301
Actinomycetota
Streptomyces decoyicus NRRL 2666 [CP082301]
4928827
4928901
+
Thr
TGT
-
¡û
>C211400061
CP082945
Actinomycetota
Streptomyces angustmyceticus JCM 4053 [CP082945]
3411661
3411587
-
Thr
TGT
-
¡û
>C231018491
AP025668
Actinomycetota
Streptomyces hygroscopicus HOK021 [AP025668]
7809118
7809044
-
Thr
TGT
-
¡û
>C231195936
CP084681
Actinomycetota
Streptomyces inhibens NRRL30439 [CP084681]
5865826
5865900
+
Thr
TGT
-
¡û
>C231224764
CP086217
Actinomycetota
Streptomyces lydicus M01 [CP086217]
5070364
5070438
+
Thr
TGT
-
¡û
>C231401534
CP098437
Actinomycetota
Streptomyces lydicamycinicus MMS22-DDSA8 [CP098437]
3510876
3510802
-
Thr
TGT
-
¡û
>C231456444
CP102609
Actinomycetota
Streptomyces sp. G7(2002) [CP102609]
5739294
5739368
+
Thr
TGT
-
¡û
>C231484816
CP104098
Actinomycetota
Streptomyces noursei IFO14147 [CP104098]
5107543
5107617
+
Thr
TGT
-
¡û
>C231488590
CP104317
Actinomycetota
Streptomyces angustmyceticus CQUSa03 [CP104317]
3244237
3244163
-
Thr
TGT
-
¡û
>C231505265
CP106840
Actinomycetota
Streptomyces sp. Je 1-4 [CP106840]
3792676
3792602
-
Thr
TGT
-
¡û
>C231538495
CP110836
Actinomycetota
Streptomyces sp. Je 1-4 4N24 LW030448 [CP110836]
3792676
3792602
-
Thr
TGT
-
¡û
>C231538560
CP110845
Actinomycetota
Streptomyces sp. Je 1-4 4N24_ara LW030448 [CP110845]
3803888
3803814
-
Thr
TGT
-
¡û
>C231557336
CP114202
Actinomycetota
Streptomyces libani subsp. libani DSM 40555 [CP114202]
3625970
3625896
-
Thr
TGT
-
¡û
>C231557401
CP114203
Actinomycetota
Streptomyces nigrescens DSM 40276 [CP114203]
4045457
4045383
-
Thr
TGT
-
¡û
>C231557465
CP114205
Actinomycetota
Streptomyces tubercidicus DSM 40261 [CP114205]
3347232
3347158
-
Thr
TGT
-
¡û
>C241025961
CP023691
Actinomycetota
Streptomyces platensis ATCC 23948 [CP023691]
5172992
5173066
+
Thr
TGT
-
¡û
>C241117140
CP047146
Actinomycetota
Streptomyces sp. GS7 [CP047146]
8339193
8339119
-
Thr
TGT
-
¡û
>C241199988
CP107782
Actinomycetota
Streptomyces platensis NBC_00573 [CP107782]
3606650
3606576
-
Thr
TGT
-
¡û
>C241201984
CP107884
Actinomycetota
Streptomyces tubercidicus NBC_00475 [CP107884]
3548149
3548075
-
Thr
TGT
-
¡û
>C241202027
CP107885
Actinomycetota
Streptomyces decoyicus NBC_00472 [CP107885]
5318092
5318166
+
Thr
TGT
-
¡û
>C241204043
CP107940
Actinomycetota
Streptomyces sp. NBC_00400 [CP107940]
3361198
3361124
-
Thr
TGT
-
¡û
>C241204935
CP107963
Actinomycetota
Streptomyces platensis NBC_00375 [CP107963]
5244365
5244439
+
Thr
TGT
-
¡û
>C241206228
CP108005
Actinomycetota
Streptomyces caniferus NBC_00337 [CP108005]
5070305
5070379
+
Thr
TGT
-
¡û
>C241206976
CP108029
Actinomycetota
Streptomyces caniferus NBC_00314 [CP108029]
3663939
3663865
-
Thr
TGT
-
¡û
>C241207420
CP108347
Actinomycetota
Streptomyces decoyicus NBC_01359 [CP108347]
3894867
3894793
-
Thr
TGT
-
¡û
>C241208344
CP108368
Actinomycetota
Streptomyces platensis NBC_01337 [CP108368]
3648784
3648710
-
Thr
TGT
-
¡û
>C241208862
CP108419
Actinomycetota
Streptomyces tubercidicus NBC_01297 [CP108419]
3354391
3354317
-
Thr
TGT
-
¡û
>C241209756
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
4132745
4132670
-
Thr
TGT
-
¡û
>C241210019
CP108473
Actinomycetota
Streptomyces caniferus NBC_01256 [CP108473]
3614073
3613999
-
Thr
TGT
-
¡û
>C241210187
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
5539526
5539601
+
Thr
TGT
-
¡û
>C241216594
CP109455
Actinomycetota
Streptomyces sp. NBC_01456 [CP109455]
4112973
4112899
-
Thr
TGT
-
¡û
>C241216658
CP109460
Actinomycetota
Streptomyces sp. NBC_01454 [CP109460]
3362894
3362820
-
Thr
TGT
-
¡û
>W1511518826
JXYI02000049
Actinomycetota
Streptomyces ahygroscopicus subsp. wuyiensis CK-15 [JXYI]
24272
24198
-
Thr
TGT
[ENA]
¡û
>W1511707048
LGUU01000194
Actinomycetota
Streptomyces decoyicus NRRL 2666 [LGUU]
76469
76393
-
Thr
TGT
[ENA]
¡û
>W121061442
AJGV01000076
Actinomycetota
Streptomyces auratus AGR0001 [AJGV]
4139
4065
-
Thr
TGT
[ENA]
¡û
>W1610052024
BBHO01000125
Actinomycetota
Streptomyces lucensis JCM 4490 [BBHO]
2420
2346
-
Thr
TGT
[ENA]
¡û
>W1610633084
LIQL01000691
Actinomycetota
Streptomyces diastatochromogenes [LIQL]
3096
3170
+
Thr
TGT
[ENA]
¡û
>W1710048402
BBHO01000125
Actinomycetota
Streptomyces lucensis JCM 4490 [BBHO]
2420
2346
-
Thr
TGT
[ENA]
¡û
>W1710502213
FMCH01000476
Actinomycetota
Streptomyces sp. DvalAA-14 [FMCH]
38821
38895
+
Thr
TGT
[ENA]
¡û
>W1710503887
FMHL01000071
Actinomycetota
Streptomyces sp. SceaMP-e96 [FMHL]
1667
1593
-
Thr
TGT
[ENA]
¡û
>W1710526997
FNKS01000001
Actinomycetota
Streptomyces sp. KS_16 [FNKS]
3258705
3258631
-
Thr
TGT
[ENA]
¡û
>W1710534767
FNSB01000001
Actinomycetota
Streptomyces sp. 2224.1 [FNSB]
1211573
1211499
-
Thr
TGT
[ENA]
¡û
>W1710535034
FNSG01000001
Actinomycetota
Streptomyces sp. 2112.2 [FNSG]
4763280
4763354
+
Thr
TGT
[ENA]
¡û
>W1710535212
FNSJ01000002
Actinomycetota
Streptomyces sp. 2314.4 [FNSJ]
123075
123149
+
Thr
TGT
[ENA]
¡û
>W1710536880
FNTM01000001
Actinomycetota
Streptomyces sp. 2133.1 [FNTM]
4764011
4764085
+
Thr
TGT
[ENA]
¡û
>W1710537100
FNTP01000001
Actinomycetota
Streptomyces sp. 2112.3 [FNTP]
3335009
3334935
-
Thr
TGT
[ENA]
¡û
>W1710610251
FYEY01000001
Actinomycetota
Streptomyces sp. 2114.4 [FYEY]
4740975
4741049
+
Thr
TGT
[ENA]
¡û
>W1710767516
LIQL01000691
Actinomycetota
Streptomyces diastatochromogenes [LIQL]
3096
3170
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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