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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306656 (126 seq.)
>W131010905
AHYV01000034
Bacillota
Enterococcus avium ATCC 14025 [AHYV]
524
451
-
Arg
ACG
[ENA]
¡û
>W131027530
AJAK01000016
Bacillota
Enterococcus malodoratus ATCC 43197 [AJAK]
523
450
-
Arg
ACG
[ENA]
¡û
>W131027542
AJAK01000017
Bacillota
Enterococcus malodoratus ATCC 43197 [AJAK]
321471
321398
-
Arg
ACG
[ENA]
¡û
>W131027586
AJAL01000010
Bacillota
Enterococcus raffinosus ATCC 49464 [AJAL]
337485
337558
+
Arg
ACG
[ENA]
¡û
>W131031963
AJDQ01000006
Bacillota
Enterococcus gilvus ATCC BAA-350 [AJDQ]
236966
237039
+
Arg
ACG
[ENA]
¡û
>W1711108406
LTTS01000114
Bacillota
Enterococcus sp. HMSC066C04 [LTTS]
47
120
+
Arg
ACG
[ENA]
¡û
>W1711114887
LTZR01000076
Bacillota
Enterococcus sp. HMSC14A10 [LTZR]
47
120
+
Arg
ACG
[ENA]
¡û
>W1711186743
LWOL01000209
Bacillota
Enterococcus sp. HMSC05C03 [LWOL]
461
388
-
Arg
ACG
[ENA]
¡û
>W1711187035
LWOS01000119
Bacillota
Enterococcus sp. HMSC29A04 [LWOS]
45
118
+
Arg
ACG
[ENA]
¡û
>W131201341
ASWA01000004
Bacillota
Enterococcus malodoratus ATCC 43197 [ASWA]
683
756
+
Arg
ACG
[ENA]
¡û
>W131201372
ASWA01000005
Bacillota
Enterococcus malodoratus ATCC 43197 [ASWA]
683
756
+
Arg
ACG
[ENA]
¡û
>W131201644
ASWF01000003
Bacillota
Enterococcus raffinosus ATCC 49464 [ASWF]
12864
12937
+
Arg
ACG
[ENA]
¡û
>W131201777
ASWH01000001
Bacillota
Enterococcus gilvus ATCC BAA-350 [ASWH]
3027938
3027865
-
Arg
ACG
[ENA]
¡û
>W131201786
ASWH01000001
Bacillota
Enterococcus gilvus ATCC BAA-350 [ASWH]
2748876
2748803
-
Arg
ACG
[ENA]
¡û
>W1712067845
NGLG01000001
Bacillota
Enterococcus sp. 3H8_DIV0648 [NGLG]
2399457
2399384
-
Arg
ACG
[ENA]
¡û
>W1712068822
NGLY01000001
Bacillota
Enterococcus sp. 12E11_DIV0728 [NGLY]
2434
2507
+
Arg
ACG
[ENA]
¡û
>W1712068874
NGLY01000006
Bacillota
Enterococcus sp. 12E11_DIV0728 [NGLY]
2434
2507
+
Arg
ACG
[ENA]
¡û
>W1712096880
NIBK01000001
Bacillota
Enterococcus sp. 12F9_DIV0723 [NIBK]
2784761
2784688
-
Arg
ACG
[ENA]
¡û
>W1712096919
NIBK01000003
Bacillota
Enterococcus sp. 12F9_DIV0723 [NIBK]
1279
1352
+
Arg
ACG
[ENA]
¡û
>WENV180163434
OAVH01014687
[OAVH] human gut metagenome; faeces
591
664
+
Arg
ACG
[ENA]
¡û
>WENV180406808
OBUQ01000084
[OBUQ] human gut metagenome; faeces
68
141
+
Arg
ACG
[ENA]
¡û
>WENV180442250
OBWW01023498
[OBWW] human gut metagenome; faeces
531
604
+
Arg
ACG
[ENA]
¡û
>WENV182401631
OIER01004446
[OIER] human gut metagenome; human gut
2906
2833
-
Arg
ACG
[ENA]
¡û
>WENV182800758
OJUF01005030
[OJUF] human gut metagenome; human gut
234
161
-
Arg
ACG
[ENA]
¡û
>WENV182803488
OJUL01001106
[OJUL] human gut metagenome; human gut
3709
3636
-
Arg
ACG
[ENA]
¡û
>WENV182807774
OJVZ01000002
[OJVZ] human gut metagenome; human gut
5030
5103
+
Arg
ACG
[ENA]
¡û
>WENV182823255
OKBS01001547
[OKBS] human gut metagenome; human gut
592
665
+
Arg
ACG
[ENA]
¡û
>WENV182828059
OKDE01006977
[OKDE] human gut metagenome; human gut
708
781
+
Arg
ACG
[ENA]
¡û
>WENV182950249
OKVR01001437
[OKVR] human gut metagenome; human gut
1055
1128
+
Arg
ACG
[ENA]
¡û
>WENV182963194
OKWP01001080
[OKWP] human gut metagenome; stool
1895
1822
-
Arg
ACG
[ENA]
¡û
>WENV170540013
CWGS01000267
[CWGS] human gut metagenome; ENVO:feces
43
116
+
Arg
ACG
[ENA]
¡û
>WENV170540571
CWHE01000180
[CWHE] human gut metagenome; ENVO:feces
43
116
+
Arg
ACG
[ENA]
¡û
>WENV170541367
CXPN01001238
[CXPN] human gut metagenome genome assembly hA5, contig hA5_contig005349.; ENVO:feces
825
752
-
Arg
ACG
[ENA]
¡û
>WENV170541693
CXPR01003178
[CXPR] human gut metagenome genome assembly hA9, contig hA9_contig006182.; ENVO:feces
334
407
+
Arg
ACG
[ENA]
¡û
>WENV170542919
CXQK01003153
[CXQK] human gut metagenome genome assembly hC5, contig hC5_contig005179.; ENVO:feces
5833
5906
+
Arg
ACG
[ENA]
¡û
>WENV170545310
CXRY01001710
[CXRY] human gut metagenome genome assembly hG10, contig; ENVO:feces
122
195
+
Arg
ACG
[ENA]
¡û
>WENV170545817
CXSI01001209
[CXSI] human gut metagenome genome assembly hG6, contig hG6_contig004768.; ENVO:feces
77
150
+
Arg
ACG
[ENA]
¡û
>C181194567
CP030932
Bacillota
Enterococcus gilvus CR1 [CP030932]
2511246
2511173
-
Arg
ACG
-
¡û
>C181194576
CP030932
Bacillota
Enterococcus gilvus CR1 [CP030932]
2220424
2220351
-
Arg
ACG
-
¡û
>C191120797
CP034169
Bacillota
Enterococcus avium 352 [CP034169]
4378009
4377936
-
Arg
ACG
-
¡û
>W1910177251
BJDP01000010
Bacillota
Enterococcus sp. 241-2-2 [BJDP]
532
605
+
Arg
ACG
[ENA]
¡û
>W1910177254
BJDP01000013
Bacillota
Enterococcus sp. 241-2-2 [BJDP]
3
76
+
Arg
ACG
[ENA]
¡û
>W1910177301
BJDQ01000008
Bacillota
Enterococcus sp. 63-4 [BJDQ]
95154
95081
-
Arg
ACG
[ENA]
¡û
>W1910177329
BJDQ01000017
Bacillota
Enterococcus sp. 63-4 [BJDQ]
24810
24737
-
Arg
ACG
[ENA]
¡û
>W1910177627
BJDW01000028
Bacillota
Enterococcus viikkiensis LMG 26075 [BJDW]
31084
31011
-
Arg
ACG
[ENA]
¡û
>W1910177646
BJDX01000006
Bacillota
Enterococcus xiangfangensis 11097 [BJDX]
614
687
+
Arg
ACG
[ENA]
¡û
>W1910177948
BJED01000011
Bacillota
Enterococcus sp. 190-7 [BJED]
141765
141692
-
Arg
ACG
[ENA]
¡û
>W1911084041
NNBZ01000001
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
2020122
2020049
-
Arg
ACG
[ENA]
¡û
>W1911084049
NNBZ01000001
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
1813360
1813287
-
Arg
ACG
[ENA]
¡û
>W1911084094
NNBZ01000011
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
4350
4423
+
Arg
ACG
[ENA]
¡û
>W1810045358
NBSL01000002
Bacillota
Enterococcus avium FDAARGOS_182 [NBSL]
3028369
3028442
+
Arg
ACG
[ENA]
¡û
>W1810045422
NBSM01000001
Bacillota
Enterococcus avium FDAARGOS_180 [NBSM]
2408157
2408230
+
Arg
ACG
[ENA]
¡û
>W1810817942
QSCV01000114
Bacillota
Enterococcus avium OF02-3AC [QSCV]
66
139
+
Arg
ACG
[ENA]
¡û
>W2010090628
BJDP01000010
Bacillota
Enterococcus sp. 241-2-2 [BJDP]
532
605
+
Arg
ACG
[ENA]
¡û
>W2010090631
BJDP01000013
Bacillota
Enterococcus sp. 241-2-2 [BJDP]
3
76
+
Arg
ACG
[ENA]
¡û
>W2010090678
BJDQ01000008
Bacillota
Enterococcus sp. 63-4 [BJDQ]
95154
95081
-
Arg
ACG
[ENA]
¡û
>W2010090706
BJDQ01000017
Bacillota
Enterococcus sp. 63-4 [BJDQ]
24810
24737
-
Arg
ACG
[ENA]
¡û
>W2010091004
BJDW01000028
Bacillota
Enterococcus viikkiensis LMG 26075 [BJDW]
31084
31011
-
Arg
ACG
[ENA]
¡û
>W2010091023
BJDX01000006
Bacillota
Enterococcus xiangfangensis 11097 [BJDX]
614
687
+
Arg
ACG
[ENA]
¡û
>W2010091325
BJED01000011
Bacillota
Enterococcus sp. 190-7 [BJED]
141765
141692
-
Arg
ACG
[ENA]
¡û
>W2010159980
CAAKNX010000091
Bacillota
Enterococcus avium [CAAKNX]
43
116
+
Arg
ACG
[ENA]
¡û
>W2010160154
CAAKOC010000184
Bacillota
Enterococcus avium [CAAKOC]
43
116
+
Arg
ACG
[ENA]
¡û
>W2010214148
CABHNH010000048
Bacillota
Enterococcus avium [CABHNH]
556
483
-
Arg
ACG
[ENA]
¡û
>W2010214178
CABHNH010000080
Bacillota
Enterococcus avium [CABHNH]
1152
1079
-
Arg
ACG
[ENA]
¡û
>W2010214567
CABHNP010000014
Bacillota
Enterococcus avium [CABHNP]
663
736
+
Arg
ACG
[ENA]
¡û
>W2010277262
CABLCA020000146
Bacillota
Enterococcus raffinosus [CABLCA]
428
355
-
Arg
ACG
[ENA]
¡û
>W2010278293
CABMET010000114
Bacillota
Enterococcus avium [CABMET]
66
139
+
Arg
ACG
[ENA]
¡û
>W2011007349
NNBZ01000001
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
2020122
2020049
-
Arg
ACG
[ENA]
¡û
>W2011007357
NNBZ01000001
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
1813360
1813287
-
Arg
ACG
[ENA]
¡û
>W2011007402
NNBZ01000011
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
4350
4423
+
Arg
ACG
[ENA]
¡û
>W2011188137
PDXQ01000001
Bacillota
Enterococcus avium FDAARGOS_185 [PDXQ]
2637165
2637092
-
Arg
ACG
[ENA]
¡û
>W2011188199
PDXR01000001
Bacillota
Enterococcus avium FDAARGOS_183 [PDXR]
2333281
2333354
+
Arg
ACG
[ENA]
¡û
>W2011320376
QWLG01000034
Bacillota
Enterococcus asini J2 [QWLG]
532
605
+
Arg
ACG
[ENA]
¡û
>W2011342713
QYNP01000100
Bacillota
Enterococcus sp. T0101B.F-10 [QYNP]
90
163
+
Arg
ACG
[ENA]
¡û
>W2011452513
RKPN01000037
Bacillota
Enterococcus avium P18 C A7 [RKPN]
26387
26314
-
Arg
ACG
[ENA]
¡û
>W2011509813
RYZS01000001
Bacillota
Enterococcus avium LC0559/18 [RYZS]
858489
858562
+
Arg
ACG
[ENA]
¡û
>W2011553622
SDXR01000074
Bacillota
Enterococcus avium B6 [SDXR]
65235
65162
-
Arg
ACG
[ENA]
¡û
>W2011760112
UARP01000001
Bacillota
Enterococcus malodoratus NCTC12366 [UARP]
693981
693908
-
Arg
ACG
[ENA]
¡û
>W2011760148
UARP01000005
Bacillota
Enterococcus malodoratus NCTC12366 [UARP]
667202
667129
-
Arg
ACG
[ENA]
¡û
>W2011821741
UFXU01000002
Bacillota
Enterococcus malodoratus NCTC12365 [UFXU]
607314
607387
+
Arg
ACG
[ENA]
¡û
>W2011821749
UFXU01000002
Bacillota
Enterococcus malodoratus NCTC12365 [UFXU]
933856
933929
+
Arg
ACG
[ENA]
¡û
>W2011825672
UGIH01000001
Bacillota
Enterococcus avium NCTC9938 [UGIH]
939859
939932
+
Arg
ACG
[ENA]
¡û
>W2012407881
WOUC01000100
Bacillota
Enterococcus avium APC2847 [WOUC]
140
213
+
Arg
ACG
[ENA]
¡û
>W2012407950
WOUD01000137
Bacillota
Enterococcus avium APC2848 [WOUD]
1084
1011
-
Arg
ACG
[ENA]
¡û
>W2012408011
WOUE01000109
Bacillota
Enterococcus avium APC2849 [WOUE]
1084
1011
-
Arg
ACG
[ENA]
¡û
>W2012481618
WWRN01000163
Bacillota
Enterococcus avium BIOML-A4 [WWRN]
90
163
+
Arg
ACG
[ENA]
¡û
>W2012481691
WWRO01000183
Bacillota
Enterococcus avium BIOML-A3 [WWRO]
90
163
+
Arg
ACG
[ENA]
¡û
>W2012481747
WWRP01000178
Bacillota
Enterococcus avium BIOML-A2 [WWRP]
90
163
+
Arg
ACG
[ENA]
¡û
>W2012481778
WWRQ01000024
Bacillota
Enterococcus avium BIOML-A1 [WWRQ]
46266
46193
-
Arg
ACG
[ENA]
¡û
>W2012499970
WXOO01000022
Bacillota
Enterococcus raffinosus BIOML-A1 [WXOO]
73585
73512
-
Arg
ACG
[ENA]
¡û
>W2110074833
CABGUH010000004
Bacillota
Enterococcus avium 4928STDY7071631 [CABGUH]
201230
201157
-
Arg
ACG
[ENA]
¡û
>W2110158420
JAASIQ010000014
Bacillota
Enterococcus raffinosus K36 [JAASIQ]
612
685
+
Arg
ACG
[ENA]
¡û
>W2110365182
JADPBC010000027
Bacillota
Enterococcus avium BSD2780061687b_171204_B3 [JADPBC]
618
691
+
Arg
ACG
[ENA]
¡û
>W2110462398
JAFBFE010000006
Bacillota
Enterococcus xiangfangensis DSM 105127 [JAFBFE]
203049
202976
-
Arg
ACG
[ENA]
¡û
>W2110462403
JAFBFE010000010
Bacillota
Enterococcus xiangfangensis DSM 105127 [JAFBFE]
21
94
+
Arg
ACG
[ENA]
¡û
>W2110512796
JAFLVR010000031
Bacillota
Enterococcus sp. MJM16 [JAFLVR]
67408
67335
-
Arg
ACG
[ENA]
¡û
>W2110512978
JAFLVW010000048
Bacillota
Enterococcus hulanensis DIV0645b [JAFLVW]
554
627
+
Arg
ACG
[ENA]
¡û
>W2110620572
JAHLOS010000050
Bacillota
Enterococcus raffinosus N17 [JAHLOS]
25310
25237
-
Arg
ACG
[ENA]
¡û
>W2110620695
JAHLOU010000079
Bacillota
Enterococcus avium N9 [JAHLOU]
16604
16531
-
Arg
ACG
[ENA]
¡û
>W2110620721
JAHLOV010000001
Bacillota
Enterococcus devriesei N6 [JAHLOV]
659
732
+
Arg
ACG
[ENA]
¡û
>W2110620769
JAHLOV010000008
Bacillota
Enterococcus devriesei N6 [JAHLOV]
45
118
+
Arg
ACG
[ENA]
¡û
>C201004455
AP019814
Bacillota
Enterococcus avium G-15 [AP019814]
46373
46446
+
Arg
ACG
-
¡û
>C201004463
AP019814
Bacillota
Enterococcus avium G-15 [AP019814]
424135
424208
+
Arg
ACG
-
¡û
>C211315386
CP072888
Bacillota
Enterococcus raffinosus F162_2 [CP072888]
2663634
2663561
-
Arg
ACG
-
¡û
>W2110727230
JAJCJG010000075
Bacillota
Enterococcus avium DFI.7.74 [JAJCJG]
140
213
+
Arg
ACG
[ENA]
¡û
>C211388357
CP081846
Bacillota
Enterococcus raffinosus CX012922 [CP081846]
2492517
2492444
-
Arg
ACG
-
¡û
>C231490780
CP104392
Bacillota
Enterococcus raffinosus HG-5 [CP104392]
2776564
2776491
-
Arg
ACG
-
¡û
>C231497987
CP104762
Bacillota
Enterococcus raffinosus ATCC 49464 [CP104762]
2833785
2833712
-
Arg
ACG
-
¡û
>C231498070
CP104764
Bacillota
Enterococcus raffinosus Er676 [CP104764]
2755970
2755897
-
Arg
ACG
-
¡û
>W2110775706
VODK01000002
Bacillota
Enterococcus avium L8 [VODK]
34
107
+
Arg
ACG
[ENA]
¡û
>C241026876
CP024590
Bacillota
Enterococcus avium FDAARGOS_184 [CP024590]
2890478
2890551
+
Arg
ACG
-
¡û
>W2130011109
JAASJS010000055
Bacillota
Enterococcus gilvus K61 [JAASJS]
90
163
+
Arg
ACG
[ENA]
¡û
>W1610021473
ATKJ02000146
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
428
355
-
Arg
ACG
[ENA]
¡û
>W1610066540
BCPU01000139
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
14
87
+
Arg
ACG
[ENA]
¡û
>W1610067019
BCQF01000055
Bacillota
Enterococcus pseudoavium NBRC 100491 [BCQF]
74
1
-
Arg
ACG
[ENA]
¡û
>W1610462455
FKLT01000091
Bacillota
Enterococcus faecium [FKLT]
2370
2443
+
Arg
ACG
[ENA]
¡û
>W1710018168
ATKJ02000146
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
428
355
-
Arg
ACG
[ENA]
¡û
>W1710063878
BCPU01000139
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
14
87
+
Arg
ACG
[ENA]
¡û
>W1710064450
BCQF01000055
Bacillota
Enterococcus pseudoavium NBRC 100491 [BCQF]
74
1
-
Arg
ACG
[ENA]
¡û
>W1710461625
FKLT01000091
Bacillota
Enterococcus faecium [FKLT]
2370
2443
+
Arg
ACG
[ENA]
¡û
>W1710553520
FOHR01000009
Bacillota
Enterococcus malodoratus kppr-6 [FOHR]
159125
159052
-
Arg
ACG
[ENA]
¡û
>W1710659299
JXKM01000063
Bacillota
Enterococcus devriesei [JXKM]
75
2
-
Arg
ACG
[ENA]
¡û
>W1710659383
JXKO01000087
Bacillota
Enterococcus gilvus [JXKO]
291
364
+
Arg
ACG
[ENA]
¡û
>W1710659437
JXKQ01000006
Bacillota
Enterococcus hermanniensis [JXKQ]
448
521
+
Arg
ACG
[ENA]
¡û
>W1710659565
JXKU01000005
Bacillota
Enterococcus malodoratus [JXKU]
163447
163374
-
Arg
ACG
[ENA]
¡û
>W1710659788
JXLA01000126
Bacillota
Enterococcus raffinosus [JXLA]
42
115
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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