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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306812 (61 seq.)
>W1711049900
LRRD01000008
Betaproteobacteria
Ferrovum myxofaciens Z-31 [LRRD]
6272
6197
-
Thr
CGT
[ENA]
¡û
>C171083805
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
305758
305833
+
Thr
CGT
-
¡û
>C171094217
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
242982
243057
+
Thr
CGT
-
¡û
>WENV180295752
OBIZ01290548
[OBIZ] soil metagenome; soil
101
26
-
Thr
CGT
[ENA]
¡û
>WENV181172206
OEIV010541766
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
229
154
-
Thr
CGT
[ENA]
¡û
>WENV181293868
OFHG01034045
[OFHG] soil metagenome; Clay
968
893
-
Thr
CGT
[ENA]
¡û
>WENV181294181
OFHG01094366
[OFHG] soil metagenome; Clay
370
295
-
Thr
CGT
[ENA]
¡û
>WENV181296895
OFHK01001869
[OFHK] soil metagenome; Clay
3707
3632
-
Thr
CGT
[ENA]
¡û
>WENV181297791
OFHK01135291
[OFHK] soil metagenome; Clay
253
178
-
Thr
CGT
[ENA]
¡û
>WENV181469041
OGES01038038
[OGES] metagenome; Human gut stool
453
528
+
Thr
CGT
[ENA]
¡û
>WENV181882861
OGXI01000606
[OGXI] human gut metagenome; faeces
4178
4253
+
Thr
CGT
[ENA]
¡û
>WENV181929004
OGYO01007618
[OGYO] human gut metagenome; faeces
3546
3471
-
Thr
CGT
[ENA]
¡û
>WENV181973115
OHAA01012148
[OHAA] human gut metagenome; faeces
105
30
-
Thr
CGT
[ENA]
¡û
>WENV182009605
OHBJ01025376
[OHBJ] human gut metagenome; faeces
1936
1861
-
Thr
CGT
[ENA]
¡û
>W141258912
CBXX010000028
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
59781
59856
+
Thr
CGT
[ENA]
¡û
>WENV182632225
OJKW01053898
[OJKW] metagenome; faeces
211
136
-
Thr
CGT
[ENA]
¡û
>WENV183034228
OLFY01079379
[OLFY] human gut metagenome; faeces
146
71
-
Thr
CGT
[ENA]
¡û
>WENV183086369
OLJF01035889
[OLJF] metagenome; faeces
886
961
+
Thr
CGT
[ENA]
¡û
>WENV183743738
PJUJ01034151
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
172
97
-
Thr
CGT
[ENA]
¡û
>WENV183744162
PJUK01001097
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
5261
5186
-
Thr
CGT
[ENA]
¡û
>WENV170013502
AUZX01012942
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
666
591
-
Thr
CGT
[ENA]
¡û
>WENV170070367
CDZQ01022826
[CDZQ] gut metagenome; human stools
13705
13780
+
Thr
CGT
[ENA]
¡û
>WENV170565525
FJVX01000891
[FJVX] metagenome; soil
2180
2105
-
Thr
CGT
[ENA]
¡û
>WENV170661857
JXWV01138325
[JXWV] soil metagenome; rice field; organic FYM Plot
280
205
-
Thr
CGT
[ENA]
¡û
>WENV170711792
LNFM01007415
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11876
11801
-
Thr
CGT
[ENA]
¡û
>WENV170712537
LNFM01014593
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
272
197
-
Thr
CGT
[ENA]
¡û
>WENV170713561
LNFM01034774
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2179
2104
-
Thr
CGT
[ENA]
¡û
>W09119219
ACDP01000049
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
37617
37542
-
Thr
CGT
[ENA]
¡û
>W09119265
ACDQ01000016
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
27496
27421
-
Thr
CGT
[ENA]
¡û
>C191004339
AP018721
Betaproteobacteria
Sulfuritortus calidifontis J1A [AP018721]
1724132
1724207
+
Thr
CGT
-
¡û
>W1911647608
QAJP01000006
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
89217
89142
-
Thr
CGT
[ENA]
¡û
>W1911802753
QYUN01000002
Betaproteobacteria
Herbaspirillum sp. K2R10-39 [QYUN]
2958045
2957970
-
Thr
CGT
[ENA]
¡û
>W1911802822
QYUO01000002
Betaproteobacteria
Herbaspirillum sp. K1R23-30 [QYUO]
212266
212191
-
Thr
CGT
[ENA]
¡û
>W2010264356
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
2119448
2119373
-
Thr
CGT
[ENA]
¡û
>W2010288950
CABMNL010000001
Betaproteobacteria
Oxalobacter formigenes [CABMNL]
2091504
2091429
-
Thr
CGT
[ENA]
¡û
>W2010488551
JAAIVB010000079
Betaproteobacteria
Noviherbaspirillum sp. 17J57-3 [JAAIVB]
156617
156692
+
Thr
CGT
[ENA]
¡û
>W2011235592
QAJP01000006
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
89217
89142
-
Thr
CGT
[ENA]
¡û
>W2011344384
QYUN01000002
Betaproteobacteria
Herbaspirillum sp. K2R10-39 [QYUN]
2958045
2957970
-
Thr
CGT
[ENA]
¡û
>W2011344453
QYUO01000002
Betaproteobacteria
Herbaspirillum sp. K1R23-30 [QYUO]
212266
212191
-
Thr
CGT
[ENA]
¡û
>W2011471143
RPNZ01000002
Betaproteobacteria
Herbaspirillum sp. HC18 [RPNZ]
401949
402024
+
Thr
CGT
[ENA]
¡û
>W2011626366
SLZQ01000002
Betaproteobacteria
Paucimonas lemoignei DSM 7445 [SLZQ]
164013
164088
+
Thr
CGT
[ENA]
¡û
>W2011626792
SLZY01000004
Betaproteobacteria
Sulfuritortus calidifontis DSM 103923 [SLZY]
137352
137277
-
Thr
CGT
[ENA]
¡û
>W2011673695
SPQI01000237
Betaproteobacteria
Oxalobacteraceae bacterium OM1 [SPQI]
2060
2135
+
Thr
CGT
[ENA]
¡û
>W2011694768
STGI01000005
Betaproteobacteria
Herbaspirillum sp. ST 5-3 [STGI]
95649
95574
-
Thr
CGT
[ENA]
¡û
>W2012048038
VIWD01000009
Betaproteobacteria
Herbaspirillum hiltneri 3195 [VIWD]
119669
119594
-
Thr
CGT
[ENA]
¡û
>W2110437983
JAEPBG010000014
Betaproteobacteria
Noviherbaspirillum pedocola DKR-6 [JAEPBG]
34951
34876
-
Thr
CGT
[ENA]
¡û
>C201107540
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
2448502
2448427
-
Thr
CGT
-
¡û
>C211274465
CP070327
Betaproteobacteria
Ferrovum myxofaciens [CP070327]
2208536
2208461
-
Thr
CGT
-
¡û
>C211285126
CP071137
Betaproteobacteria
Ferrovum myxofaciens [CP071137]
2288458
2288383
-
Thr
CGT
-
¡û
>C231399354
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
2062805
2062730
-
Thr
CGT
-
¡û
>C231399382
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
493933
494008
+
Thr
CGT
-
¡û
>C231399426
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
310704
310779
+
Thr
CGT
-
¡û
>C231399495
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
2001706
2001631
-
Thr
CGT
-
¡û
>C231399594
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
1961810
1961735
-
Thr
CGT
-
¡û
>C231399623
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
423919
423994
+
Thr
CGT
-
¡û
>C231399672
CP098251
Betaproteobacteria
Oxalobacter sp. JAC-2022 OxK [CP098251]
313713
313788
+
Thr
CGT
-
¡û
>C231399722
CP098252
Betaproteobacteria
Oxalobacter sp. JAC-2022 Va3 [CP098252]
252507
252582
+
Thr
CGT
-
¡û
>C241158113
CP053676
Betaproteobacteria
Ferrovum myxofaciens [CP053676]
2090133
2090058
-
Thr
CGT
-
¡û
>W121061968
AJHH01000426
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
3993
3918
-
Thr
CGT
[ENA]
¡û
>W121085150
AKJA01000017
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
136205
136280
+
Thr
CGT
[ENA]
¡û
>W1610891029
LRRD01000008
Betaproteobacteria
Ferrovum myxofaciens Z-31 [LRRD]
6272
6197
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK