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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307050 (7 seq.)
>WENV170728971
LULF01003682
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
1842
1917
+
Thr
TGT
[ENA]
¡û
>WENV170735436
LULL01001832
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
1695
1620
-
Thr
TGT
[ENA]
¡û
>WENV170740304
LULR01004933
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
1518
1443
-
Thr
TGT
[ENA]
¡û
>WENV170740847
LULS01000817
[LULS] marine metagenome; Red Sea water column Station 108 - depth 200m
746
671
-
Thr
TGT
[ENA]
¡û
>WENV170744753
LULX01009439
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
1398
1323
-
Thr
TGT
[ENA]
¡û
>WENV170752630
LUMJ01002007
[LUMJ] marine metagenome; Red Sea water column Station 22 - depth 500m
3570
3645
+
Thr
TGT
[ENA]
¡û
>WENV170753054
LUMJ01013200
[LUMJ] marine metagenome; Red Sea water column Station 22 - depth 500m
9
84
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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